| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 2,858,752 | +T | pseudogene (395/2078 nt) | flhA → | formate hydrogenlyase transcriptional activator FlhA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 2,858,748 | 1 | . | T | 97.3% | 1817.0 / 31.6 | 489 | pseudogene (391/2078 nt) | flhA | formate hydrogenlyase transcriptional activator FlhA |
| Reads supporting (aligned to +/- strand): ref base . (7/6); new base T (226/250); total (233/256) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.81e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 569 total aligned reads displayed.
ACGCAGCATTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TA‑TT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCCGCGTCGTTAACAATGTCG > NZ_CP025268/2858609‑2858882 | agcaTTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TA‑tt‑tt > 2:5393247/1‑140 (MQ=255) agcaTTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TA‑tt‑tt > 1:8412084/1‑140 (MQ=255) agcaTTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TA‑tt‑tt > 1:3441122/1‑140 (MQ=255) agcaTTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TA‑tt‑tt > 1:9133825/1‑140 (MQ=255) agcaTTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TA‑tt‑tt > 2:1136863/1‑140 (MQ=255) agcaTTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TA‑tt‑tt > 2:7586471/1‑140 (MQ=255) agcaTTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TA‑tt‑tt > 1:1805215/1‑140 (MQ=255) agcaTTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TA‑tt‑tt > 1:5361835/1‑140 (MQ=255) agcaTTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TA‑tt‑tt > 1:4271738/1‑140 (MQ=255) agcaTTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TA‑tt‑tt > 1:3189515/1‑140 (MQ=255) agcaTTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TA‑tg‑tt > 2:8034955/1‑140 (MQ=255) agcaTTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACATGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TA‑tt‑tt > 2:5873547/1‑140 (MQ=255) agcaTTTTGTCGCGCCCTGATACGCTGCAGTGCAGTGACGAAGAATTTTGAGCAACCTGGCCGCAGCTGGACGCAGGTGGGCGATACCCAAAATTTGGTCACGATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TA‑tt‑tt > 2:10541505/1‑140 (MQ=255) caTTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TA‑tt‑tttg > 2:10631846/1‑138 (MQ=255) ttttGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TA‑tt‑tttggt > 2:3934920/1‑136 (MQ=255) tCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCtg < 1:8031297/140‑1 (MQ=255) cgcgCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCtgt > 2:8546774/1‑140 (MQ=255) cgcgCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCtgt < 2:5118193/140‑1 (MQ=255) cgcCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGa > 1:2794847/1‑140 (MQ=255) cgcCCTGATACGCTGCATTGCAGTTACGAAGAATTGTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAAGTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGa > 1:967969/1‑140 (MQ=255) cTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAAttt < 2:10327573/140‑1 (MQ=255) tGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTa < 2:2682621/140‑1 (MQ=255) gATTCGCTGCATTGCAGTTACGAAGAATTTTGTGACACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCTCTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTAt < 2:6827605/140‑1 (MQ=255) cTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTa < 1:2026101/140‑1 (MQ=255) tGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTTTTGCCGGATGCCCCTGGCGGCGGAAGGGCC‑TATTT‑TTGGTGGCTGTGAATTTATGCGTTAt > 2:9265621/1‑140 (MQ=255) tGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGACGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTAt > 2:8591214/1‑140 (MQ=255) tGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTAt > 1:1008590/1‑140 (MQ=255) tGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTAt > 1:4443071/1‑140 (MQ=255) tGCAATGCAGTTACGAAGAATTGTGTGAAACCGGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGCTGCCACTGGCGGCGGCAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTAt < 2:7931135/140‑1 (MQ=255) cATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGtgatga > 2:2396774/1‑140 (MQ=255) cATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGa > 1:8169343/1‑140 (MQ=255) cATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGa > 1:3805842/1‑140 (MQ=255) cATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGa > 1:7539971/1‑140 (MQ=255) ttGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACg < 2:4625180/140‑1 (MQ=255) ttGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACg > 2:3803513/1‑140 (MQ=255) ttGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACg > 2:4214329/1‑140 (MQ=255) ttGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACACAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTGTTCGTTATGACg > 2:1738556/1‑140 (MQ=255) gCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGAt < 1:5884326/140‑1 (MQ=255) gCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGAt < 1:5616593/140‑1 (MQ=255) gCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGAt < 2:4277713/140‑1 (MQ=255) gCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGAt < 1:11201145/140‑1 (MQ=255) gCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGAt < 1:959627/140‑1 (MQ=255) gCAGTTACGAAGAAGTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGACGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGAt < 2:11153914/140‑1 (MQ=255) cAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATc < 2:6474829/140‑1 (MQ=255) ttACGAAGAATTTTGTGAAACCTGTCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGcc > 2:3089238/1‑140 (MQ=255) ttACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGcc > 1:10327773/1‑140 (MQ=255) ttACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGcc > 2:8346158/1‑140 (MQ=255) ttACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGcc > 1:5222683/1‑140 (MQ=255) aCGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGcccc > 1:3758170/1‑140 (MQ=255) aCGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGACACTGGCGGCGGAAGGGGA‑TATTT‑TTGGTGGATGTGAATTTATTCGTTATGACGATCGcgcc > 2:6349214/1‑140 (MQ=255) aagaaTTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTgg > 1:10986412/1‑140 (MQ=255) aTTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCg < 1:9473018/140‑1 (MQ=255) ttGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGaaa < 2:5598481/140‑1 (MQ=255) tgtgAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGaaaa > 1:6652868/1‑140 (MQ=255) ggCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAAt < 1:1386258/140‑1 (MQ=255) gCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATc < 1:4969105/140‑1 (MQ=255) cGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGt < 2:3271002/140‑1 (MQ=255) cTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGATCGAAAAAGAGTTCAATCGTCTGCa < 2:482447/140‑1 (MQ=255) cTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCa < 2:7707794/140‑1 (MQ=255) aGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGACAAAGAGTTCAATCGTCTGCAAACATTTa > 2:4528679/1‑140 (MQ=255) aGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTGCAATCGTCTGCAAACATTTa > 2:10011699/1‑140 (MQ=255) gTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACg < 2:8745982/140‑1 (MQ=255) ggCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAg < 2:3469774/140‑1 (MQ=255) cTATACCCACAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGAt < 2:10745041/140‑1 (MQ=255) cTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTATGCAAACATTTACGCAGAt < 2:1806623/140‑1 (MQ=255) cTATACCCAAAATTTGGTCACGATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGAt < 2:3656177/140‑1 (MQ=255) taCCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACAtt < 2:9620004/128‑1 (MQ=255) taCCCAAAATGTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGt > 1:146374/1‑140 (MQ=255) cccAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGttt > 1:10500098/1‑140 (MQ=255) ggTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCAc < 1:9884914/140‑1 (MQ=255) ggTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCAc < 2:284129/140‑1 (MQ=255) gTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCAcc > 1:4671106/1‑140 (MQ=255) cTATTGCCTTATGCTACTGGCGGAGGAAGGGCATTT‑TT‑TTGTTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAAAATTTAAGCAGATCGTTTCTGTCGTCACCGAAc < 2:7555386/140‑1 (MQ=255) cTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAAc < 1:407095/140‑1 (MQ=255) aTTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACaa > 2:9381073/1‑140 (MQ=255) cTGATGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCa < 1:902921/140‑1 (MQ=255) tGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAATGAGTTCAATCGTCTGCAAACATTTACGCTGATCGTTTCTGTCGTCACCGAACAAATCCAGAGc > 2:6939774/1‑140 (MQ=255) tGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAATGAGTTCAATCGTCTGCAAACATTTACGCAGAGCGTTTCTGTCGTCACCGAACAAATCCAgcgc > 2:7097423/1‑140 (MQ=255) tGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGc > 1:10888653/1‑140 (MQ=255) tGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGc > 1:8812480/1‑140 (MQ=255) tGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGc > 1:1647401/1‑140 (MQ=255) tGCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGc > 1:2532838/1‑140 (MQ=255) tGCCACTGGCGGCGGAAGGGCA‑TA‑TTGTTGGTGGCTGTGAAGTCATACGTAATGACGATCGCACCTGGCGAGCCAAAGAGGACAATCGTCGCCAAAAATTTACGCAGCTAGGTTCGGGCGTCACCGAACACATCCAGAGc > 2:398112/1‑140 (MQ=255) gCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGcc < 2:2218702/140‑1 (MQ=255) gCCACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGcc < 1:8569536/140‑1 (MQ=255) cACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCcgc < 1:2367597/140‑1 (MQ=255) cACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCcgc < 2:1998200/140‑1 (MQ=255) cACTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCACTGGAGCGAAAAAGAGTTCAATCGTCTGAAATCATTTACTCAGATCGTTTCTTTCGTCACCGAACAAATCCAGAGcatc < 2:60806/140‑4 (MQ=255) aCTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCACTCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCcgcg < 2:7305190/140‑1 (MQ=255) cTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCCGcgt < 1:326892/140‑1 (MQ=255) cTGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCCGcgt < 1:5049609/140‑1 (MQ=255) tGGCGGCGGAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGCTCGTTTCTGTCGTCACCGAACAAATCCAGAGCCGcgtc < 1:6294345/140‑1 (MQ=255) ggcggAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCCGCGTCGTTa < 2:8933042/140‑1 (MQ=255) ggAAGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCCGCGTCGTTAACa < 1:6960882/140‑1 (MQ=255) aGGGCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGAGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAATTCCAGAGCCGCGTCGTTAACAATg < 1:7622348/140‑1 (MQ=255) gggCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCCGCGTCGTTAACAATGt < 1:7823990/140‑1 (MQ=255) ggCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCCGCGTCGTTAACAATGTc > 1:6809457/1‑140 (MQ=255) ggCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTAGGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGACTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCCGCGTCGTTAACAATGTc < 2:1478959/140‑1 (MQ=255) gCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCCGCGTCGTTAACAATGTCg < 1:125112/140‑1 (MQ=255) gCA‑TATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCCGCGTCGTTAACAATGTCg < 1:6144664/140‑1 (MQ=255) | ACGCAGCATTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCA‑TA‑TT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCCGCGTCGTTAACAATGTCG > NZ_CP025268/2858609‑2858882 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |