BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	1,293,160	0	G	A	71.4%	261.9 / 116.8	190	noncoding (55/132 nt)	CXP41_RS06840	RtT sRNA
Reads supporting (aligned to +/- strand): ref base G (26/24); new base A (26/99); total (56/134)
Fisher's exact test for biased strand distribution p-value = 9.23e-05
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.07e-02
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 191 total aligned reads displayed.

GCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGA  >  NZ_CP025268/1293024‑1293296

gCATGGGCAGAATATTTGATTGCGGATTCGCTGGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGgcgc                                                                                                                                       >  2:9022654/1‑140 (MQ=255)

                              cttgagaGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCAt                                                                                                         <  2:6197742/134‑1 (MQ=11)

                                  agaGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCtt                                                                                                     >  2:10320753/3‑140 (MQ=255)

                                   gacttCAGGGACTTATGACAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTc                                                                                                    <  1:8994403/137‑1 (MQ=11)

                                     gTTCAGGGACTTTTGAAATTGATGGTGGTGGGGGAATGATTACTCAGCGCTGCGCGCTTCGCACTTCGGGACGTTGCATGTGGCAACGCTCTCTCGCATTCGCTCGAATCGAACCTTAGTCGAAGCTTCTCAACCTTacc                                                                                                  >  1:1546415/1‑140 (MQ=11)

                                     gTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCACGCTGGCGCTCGAGTCGAACCTTTGTCGAAGCTTCACATCCTTccc                                                                                                  >  1:3952227/1‑140 (MQ=11)

                                     gTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCAGCGGCAACGCTCTCTCGCAGGCGCTCGAGTCGAACCATGGTCGAAGCTTCTCATACATccc                                                                                                  >  1:10702066/1‑140 (MQ=11)

                                       tCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCTCCCTTCGGGACGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTAGAATCGAACCTTAGTCGAAGGTTCTCAACCTTCCCCg                                                                                                >  2:1482408/1‑140 (MQ=11)

                                       tCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCg                                                                                                >  2:8640369/1‑140 (MQ=255)

                                        cAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGc                                                                                               >  2:5409405/1‑140 (MQ=255)

                                         aGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCa                                                                                              <  1:10209566/140‑1 (MQ=255)

                                             gcTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                          <  2:296021/139‑1 (MQ=9)

                                             acgtttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGGTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                          <  1:8607227/137‑1 (MQ=11)

                                               ttttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                        <  1:8803429/140‑1 (MQ=12)

                                               ttttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                        <  1:5746399/140‑1 (MQ=12)

                                               ttttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTAGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                        <  2:9962491/140‑1 (MQ=255)

                                                tttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTTGCGCTCGAGTCGAACCGTGGGAGAAGCAACACAAACTTCCCCGCGTGGGCac                                                                                       >  2:220437/1‑139 (MQ=11)

                                                        tGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCt                                                                                                                                      >  1:727032/1‑85 (MQ=31)

                                                        tGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCt                                                                                                                                      <  2:727032/85‑1 (MQ=31)

                                                                                  aGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCACGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAGATTGGCTTGCGGATTCGCTGGAGAGTTCAgg                                                     >  2:7976840/1‑140 (MQ=11)

                                                                                   gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAggg                                                    <  1:5100709/140‑1 (MQ=21)

                                                                                   gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAggg                                                    <  1:7997734/140‑1 (MQ=21)

                                                                                   gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAggg                                                    <  2:2816751/140‑1 (MQ=21)

                                                                                   gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAggg                                                    <  1:10112804/140‑1 (MQ=21)

                                                                                    cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGa                                                   >  2:675454/1‑140 (MQ=25)

                                                                                    cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGa                                                   >  2:756902/1‑140 (MQ=25)

                                                                                    cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGa                                                   <  1:11382254/140‑1 (MQ=25)

                                                                                    cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTACCCGCCTGGGCAGGATATTTGAGTGCGGATTCGGTTGTGAGTTCAgggg                                                   >  1:6558180/1‑139 (MQ=11)

                                                                                    cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCGCTCTCGCGGGCGCTCAAGGCGAACCTTGGGCGAAGCTTCTCATCCGTCCCCGCATGGGCAGCAGATTTTATTGCGGATTCGTTTGGGACTTCAgggg                                                   >  1:11049126/1‑139 (MQ=11)

                                                                                         cgcgcTTCGCCCTTCGGGTCGTTTCCAGCGGCAACCCTCACTCGCTGTCGCGCGAGCCGAACCTTAGTCGAATCTTGTCATACATCCCCCCCAGGGCAGAATATTTGATTGCGGAATCGGTTGGGAGTTCAGGGACattt                                              >  1:8167668/1‑140 (MQ=2)

                                                                                         cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGGCGAACCTTAGTCGAAGCTTCTAATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTGGCGTGAGAGTTAAGGGAGtttt                                              >  2:249945/1‑140 (MQ=11)

                                                                                         cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATCTTTTATTGCGGATTCGCTTGAGAGTTCAGGGACtttt                                              >  2:5194581/1‑140 (MQ=255)

                                                                                         cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCGTAGTCGAAGCTTCTCATCCTTCCCCGCATGTGCAGAAAATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACttgt                                              >  2:2568241/1‑138 (MQ=11)

                                                                                         cgcgcTTCGCCCTTCGGGTCGTTGCCGGCGGCAACCCTCTAACGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTATCATCCTTCCCCGCAGGGGCAGAATATTTGATTGCGGTTTCGGTTGAGAGTTCAGGGGCttgt                                              >  1:1968878/1‑138 (MQ=11)

                                                                                            gcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGaa                                           <  1:235915/140‑1 (MQ=255)

                                                                                            gcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGaa                                           <  2:8842809/140‑1 (MQ=255)

                                                                                              ttCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAg                                         <  1:10117578/140‑1 (MQ=255)

                                                                                              ttCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGAAGTTTGAAAg                                         >  2:10850522/1‑140 (MQ=255)

                                                                                                 gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGa                                      <  1:3765640/140‑1 (MQ=255)

                                                                                                 gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGa                                      <  1:1799292/140‑1 (MQ=255)

                                                                                                 gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGa                                      <  1:10941770/140‑1 (MQ=255)

                                                                                                 gCCCGTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGACGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGa                                      <  1:7149326/140‑1 (MQ=255)

                                                                                                  cccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCCTCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAt                                     <  2:9765094/140‑1 (MQ=255)

                                                                                                   ccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtg                                    <  2:10152639/140‑1 (MQ=255)

                                                                                                    cTTCGGGTCGTTGCCTGCGGCAACGCACGCTCGCTGACGCTCGAGCCGAACCATAGTCGAAGCTTCTCATCCTGCCCCGCATGGGCAGACTATTTGATTGCGGATTCGCTTGAGAGTTCTGGGACTTTTGAAAGTGAtgg                                   <  1:60152/140‑1 (MQ=11)

                                                                                                      tCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtg                                 <  1:7377599/140‑1 (MQ=255)

                                                                                                      tCGGGTCGTTGCCAGCGGCAACGCGCTCTCGCGGACGCGCGAGCCGAACCGTAGTCGAAGCTTCTCATCCTTCCCCCCATGGGCAGAATATTTGATTGCGGCTTCGCTTGTGAGTTCAGGGACGTTTGAAAGTGAtgggg                                 >  1:861605/1‑138 (MQ=11)

                                                                                                      tCGGGTCGGTGCCTGCTGCAACGCACTCTCGCTGTCGCTCCAGCCGAACCAGAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtg                                 <  2:3269581/140‑1 (MQ=11)

                                                                                                       cGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtgg                                <  1:4823014/140‑1 (MQ=255)

                                                                                                       cGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtgg                                <  2:3404869/140‑1 (MQ=255)

                                                                                                       cGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtgg                                <  2:11406052/140‑1 (MQ=255)

                                                                                                       cGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtgg                                <  2:3939305/140‑1 (MQ=255)

                                                                                                       cGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCAAGGGCAGAAAATTTGATTGCGGTTTCGGTTGAGAGTTCAGGGACGTTTGTAAGTGAtggggg                                >  1:7475061/1‑140 (MQ=11)

                                                                                                        ggggCGTTGCCTGCGGCAACGCTCGCGCGCTGCCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTGCCCCGCATGGGCAGAATATTTGAGTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtggt                               <  2:8690977/140‑1 (MQ=11)

                                                                                                        gggTCTTTGCCAGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAGATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtggt                               <  2:6297931/140‑1 (MQ=11)

                                                                                                        gggTCGTTGCCTGCGGCATCGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtggt                               <  2:5645067/140‑1 (MQ=255)

                                                                                                        gggTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtggt                               <  2:11347191/140‑1 (MQ=255)

                                                                                                        gggTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtggt                               <  1:2578877/140‑1 (MQ=255)

                                                                                                        gggTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtggt                               <  1:8095666/140‑1 (MQ=255)

                                                                                                        gggTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCGTCCCCGCAGGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtggt                               <  2:4222898/140‑1 (MQ=255)

                                                                                                          gTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCATCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtggggg                             >  1:9136731/1‑140 (MQ=255)

                                                                                                           tCGTTGCCTGCGTCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggg                            <  2:4803544/140‑1 (MQ=255)

                                                                                                           tCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggg                            <  1:1272426/140‑1 (MQ=255)

                                                                                                             ggtGCCTGCGGCAACGCTCTCTCGCTGACGCTCGACCCGAAACTTAGTCGAATCTTCTCAGCCTTCACCGCATTGGCAGAATATTTGATTGCGTATTCGCTTGAGATTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                          <  1:2094774/138‑1 (MQ=11)

                                                                                                             ggtGCCTGCGGCAACGCTCTCTCGATGACGCTCGTGCCGACCCTTTTTCGAATATTCTCATCCTTCCCCGCATGGGCAGAATATTTTATTGCGTAGTAGATTGAGTTTTCTGGTAATTATGAAAGTGATGGTGGTggggg                          <  2:7068662/138‑1 (MQ=2)

                                                                                                             ggtGCCGGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCAGCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                          <  2:7786786/138‑1 (MQ=11)

                                                                                                             gTTGCCTGCGGCTACGCTCTCTCGCTGTCGCTCTAGCCGAAGCTTTGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGATTGAGATTTCTGGGACTTTTGAAAGTGATGGTGGTggggg                          <  1:7563266/140‑1 (MQ=11)

                                                                                                             gTTGCCTGCGGCTACGCTCTCTCGATGACGATCGTGCCTAAAGTTATTCGTAGCTTATCATCCTTACACGCTTGGGCATATTAATTTATTTCGGATTCGCTTGAGAGTTCATGGACTTTTGAAAGTGATGGTGGTggggg                          <  2:7184861/140‑1 (MQ=2)

                                                                                                             gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                          <  1:6477753/140‑1 (MQ=255)

                                                                                                             gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                          <  1:2493805/140‑1 (MQ=255)

                                                                                                             gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                          <  2:5829835/140‑1 (MQ=255)

                                                                                                             gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                          <  2:9579452/140‑1 (MQ=255)

                                                                                                             gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                          <  1:3086150/140‑1 (MQ=255)

                                                                                                             gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                          <  1:6141251/140‑1 (MQ=255)

                                                                                                             gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                          <  1:1131804/140‑1 (MQ=255)

                                                                                                             gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCGTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                          <  1:351405/140‑1 (MQ=255)

                                                                                                             gTTGCCAGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                          <  2:10880086/140‑1 (MQ=255)

                                                                                                               tGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCAACCTTCCCCGCTTGGGCAGAATATTTTATTGCGGATTCGGTTGGTATTTCAGGGACTTTTGACAGTGATGGTGGTGGGGGaa                        >  2:8943129/1‑140 (MQ=11)

                                                                                                               tGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCATCTCATCCTTCCCCGCATGGGCAGAATATTTTATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGaa                        >  2:539665/1‑140 (MQ=255)

                                                                                                                gCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAg                       <  1:675454/140‑1 (MQ=255)

                                                                                                                  cTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCGTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGa                     <  2:1326472/140‑1 (MQ=255)

                                                                                                                  cTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTCGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGATTATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGa                     <  1:8311494/140‑1 (MQ=255)

                                                                                                                  cTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGa                     <  1:10306930/140‑1 (MQ=255)

                                                                                                                  cTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGa                     <  1:1735475/140‑1 (MQ=255)

                                                                                                                  cTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGa                     <  1:4605792/140‑1 (MQ=255)

                                                                                                                  cTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGa                     <  1:9933949/140‑1 (MQ=255)

                                                                                                                  cTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGa                     <  1:798255/140‑1 (MQ=255)

                                                                                                                  cTGCGGCAACGCTCTCTCGCTGACGCTCGAGACGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGa                     <  2:348528/140‑1 (MQ=255)

                                                                                                                  cTGCGGCAACGCTCTCTCGCTGACGCTCGAGACGAACCTTAGTCGAAGCTTATCATCCTTCCCCGCATGGGCAGAATTTTTGATTTCGGATTCGCTTGAGAGTTCAGTGAATTTTGAAAGTAATGGTGGTGGGGGAAGGa                     <  1:2788480/140‑1 (MQ=11)

                                                                                                                   tGCGGCAACGCTCTCAAGCTGACGCTAGAGCCGAACCTTAGTCGAAGCTTATCATCCTACCCCGCAAGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTTAAAGTTTTGGTGGTGGGGGAAGGAt                    >  2:4404772/1‑140 (MQ=11)

                                                                                                                       gCAACGCTCTCTCGCTGTCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAttact                <  1:8770958/140‑4 (MQ=255)

                                                                                                                       gCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCAGCCTTCCCCGCATGGGCAGAATTTTTGATTGCGGATTCGATTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAttact                <  2:3129198/140‑4 (MQ=11)

                                                                                                                       gCAACGCTCTCTCGCTGACGCTCGAGACGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAttact                <  2:8018808/140‑4 (MQ=11)

                                                                                                                       gCAACGCTCTCTCGCTGACGCTCGACCCTAACCTTTGTCGAAGCTTCTCATCCGTCCCCGCATTGGCAGACTATTTGATTGCGGATTCGCTAGAGTGTTCAGGTACTTTTGAAAGTGATGGTGGTGGGGGAAGGAttact                <  1:7694627/140‑4 (MQ=11)

                                                                                                                         taCGCTCTCTCGCTGACGCTCGCCCCGACAGTTAGTCGTAGCGTCTCAGCCGTCCCCGCTGGGGCAGATTATTTGATTGCGGATTCGCAAGAGCGTTCTGGGACTTTTGTAAGTGATGGTGGTGGGGGAAGGAttactca              <  2:657021/139‑6 (MQ=2)

                                                                                                                         aaCGCTCTCTCGCTGGCGCTCAAGTCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGGTTGGGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAttactca              >  1:9526323/1‑135 (MQ=11)

                                                                                                                          aCGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCCTCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAttactcag             <  2:2370601/140‑7 (MQ=11)

                                                                                                                          aCGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAttactcag             <  2:10652263/140‑7 (MQ=255)

                                                                                                                           cGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGGTTGTGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAttactaagc            >  2:361070/1‑133 (MQ=11)

                                                                                                                           cGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAttactcagc            >  1:540586/1‑133 (MQ=255)

GCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGA  >  NZ_CP025268/1293024‑1293296

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`