Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0252682,233,2390TA30.7% 282.3 / 55.7 174intergenic (+139/+234)yohP/dusCsmall membrane protein YohP/tRNA dihydrouridine(16) synthase DusC
Reads supporting (aligned to +/- strand):  ref base T (32/81);  new base A (50/0);  total (92/82)
Fisher's exact test for biased strand distribution p-value = 2.80e-20
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 176 total aligned reads displayed.

AATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATG‑TGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCTT  >  NZ_CP025268/2233101‑2233378
                                                                                                                                           |                                                                                                                                           
aattaattACTGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATG‑TGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTg                                                                                                                                            <  1:7485961/140‑1 (MQ=255)
 attaattaATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATG‑TGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCGGGGGGCGGCCAAACGCCGCCCCCCCCGGc                                                                                                                                           >  1:10418418/1‑140 (MQ=255)
  ttaattaaTGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATG‑TGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCa                                                                                                                                          <  2:3697720/140‑1 (MQ=255)
  ttaattaaTGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATG‑TGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCAGCa                                                                                                                                          >  2:8594074/1‑140 (MQ=255)
     attaatGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATG‑TGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGGGGCCAAGCGCCGCCGCCCCCGGCAccc                                                                                                                                       >  2:9732081/1‑140 (MQ=255)
           gTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATG‑TGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCCGGGGGCGGCCCAACCCCGCCGCCCCCAGCACCCCCCGGc                                                                                                                                 >  2:5149541/1‑140 (MQ=37)
                  ggTCCGTAAATAACGAGAATATTTCAGTCTCTCCTCGTGTTGCGCTCCTGTCATG‑TGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCACTCGCCGCCGCCCCCTGCACCCCGGGGCTCTGGCg                                                                                                                          >  2:10345295/1‑140 (MQ=25)
                   gTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATG‑TGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGgaga                                                                                                                         >  2:560493/1‑140 (MQ=255)
                    tCCGAAAATAACGAGAATATTTCAGGCTCTCATCCTGTTGCGCTCCTGTCATG‑TGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCACTCGCCGCCGCCCCCAGCACCCCCGGGCGCTGGCGaa                                                                                                                        >  2:11059854/1‑140 (MQ=255)
                      cGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATG‑TGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATAGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACa                                                                                                                      >  2:6271572/1‑140 (MQ=255)
                        aaaaTAACGAGAATATTTCGGTCTCTCATCCTGTTGCGCTCCTGTCATG‑TGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGGAGGGGGGGGGCAATCTCCCGCCCCCCCCCCCCCCCCCGGCTCAGGCGCACaaa                                                                                                                    >  1:5662996/1‑140 (MQ=255)
                        aaaaTAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATG‑TGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGGCGGGGGGGGGCACTCGCCCCCCCCCCCAGCACCCCCCCGCGCTGGCGGACcaa                                                                                                                    >  1:10159932/1‑140 (MQ=255)
                            tAACTATAATATTTAAGTCTCTCATCCTGTTGCGCTCGGGT‑ATGTTGAATTGCTTAATATAATCACTGGCTATGGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATcg                                                                                                                <  1:696082/140‑1 (MQ=17)
                                     tatTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATG‑TGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTgcgc                                                                                                       <  2:189547/140‑1 (MQ=255)
                                      atTTCAGTCTCTCATCCTGGTGCGCTCCTGTCATG‑TGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGcgcg                                                                                                      <  2:10384465/140‑1 (MQ=255)
                                       gttCAGTGTCTCATCCTGTGGCGGTCCTGTCAGG‑TGCATTGCTTCATATACTCACTGGCGCAAGGAGCGCGCAGGGGGCGGGCCATCGCCGCCGGCCCCAGGACCCCCGGGCAGTGGCGAGCAAATATGCCGCTGGGCgg                                                                                                     >  2:306440/2‑140 (MQ=18)
                                            gTCTCTCATCCTGTTGCGCTCCTGTCATG‑TGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGccc                                                                                                <  1:11217968/140‑1 (MQ=255)
                                             tctctcATCCTGTTGCGCTCCTGTCATG‑TGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCCGGGGGCGGCCAAAAGGCGCCCCCCCCAGCAACCCCCGGCAAATGCGTACAAAAAAGCCGCAGCGCCGTGcccg                                                                                               >  1:11282694/1‑139 (MQ=18)
                                             tctctcATCCTGTTGCGCTCCTGTCATG‑TGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCt                                                                                               <  1:4679394/140‑1 (MQ=255)
                                             tctctcATCCTGTTGCGCTCCTGTCATG‑TGCATTGCTTCATATAATCACGGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCt                                                                                               <  2:10327791/140‑1 (MQ=255)
                                               tctcATCCTGTTGCGCTCCTGTCATG‑TGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAAACGCCGCCGCCCCCAGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCg                                                                                             >  2:6887689/1‑140 (MQ=255)
                                                 tcATCCTGTTGCGCTCCTGTCATG‑TGCCTTGCTTCATATAATCACTGGCTCAAGGAGCGCGCAGGGGGCGGCCAATACCCGCCCCCCCCCTCCCCCCCGGGCTCTGGCGAACACAATCGCAGCTGCGCGGTGGCCGCGGc                                                                                           >  2:6176813/1‑140 (MQ=18)
                                                   aTCCTGTTGCGCTCCTGTCATG‑TGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCtt                                                                                         <  1:5392935/140‑1 (MQ=255)
                                                    tCCTGTTGCGCTCCTGTCATG‑TGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTa                                                                                        <  2:962089/140‑1 (MQ=255)
                                                        gTTGCGCTCCTGTCATG‑TGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCCGGGGGCGGCCAAAACCCCCCGCCCCCAGCACCCCCCGGCGCAGGCCAACAAAAAAGCCCCAGCGCGGTGCCCACCGCGTATacc                                                                                    >  2:4679394/1‑140 (MQ=12)
                                                        gTTGCGCTCCTGTCATG‑TGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAAACACCCCCGCCCCCAGCACCCCCCGGCTCAGGCGAACAAAATCACCCCAGCGCCGTGCCCACGGCTTATacc                                                                                    >  2:4679989/1‑140 (MQ=18)
                                                         ttGCGCTCCTGTCATG‑TGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCCCCGCCCCCAGCACCCCCCGGCTCATGCGAACAAAATCGCCCCTGCGCGGGGCCCACGGCTTATacca                                                                                   >  2:839647/1‑139 (MQ=18)
                                                           gcgcTCCTGTCATG‑TGCATTGCTTCATATAATCACTTGCGCAAGGAGCGCGCAGGGGGGGGGCAATCCCCGCCGCCCCCAGAACCCCCCGGCTCTTGCGAACAAAAACGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTa                                                                                 >  2:6128642/1‑140 (MQ=18)
                                                           gcgcTCCTGTCATG‑TGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCAGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATACCTTa                                                                                 >  2:6366002/1‑140 (MQ=255)
                                                           gcgcTCCTGTCATG‑TGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCAGCACCCCCGGGCGCATGCGAACAAAATCGCCCCTGCGCGGTGCCCACGGCCTATCCCtaa                                                                                 >  2:6606394/1‑138 (MQ=18)
                                                           gcgcTCCTGTCATG‑TGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCCCCGCCCCCCCCAGCACCCCCGGGCTCAGGCGAACAAAATAGCCGCTGCGCGGTGCCCTCGGCTTATcccctc                                                                                 >  2:10520795/1‑137 (MQ=18)
                                                           gcgcTCCTGTCATG‑TGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAAACGCCGCCCCCCCCAGCACCCCCGCGCTCTGGCGAACAAAATAGCCGCTGCGCGGTGCCCTCGGCTTATACCATa                                                                                 >  2:1798441/1‑140 (MQ=18)
                                                              cTCCTGTCATG‑TGCATTGCTTCATATTATCACTGGCGCAAGGAGCGCGCAGGGGGGGGCCAATCGCCGCCG‑CCCCAGCACCCCCGGGGTCTTGCGAACAAAAAAGCCGCTGCGCGGTGACCACGGCTTATACCTGAAGGc                                                                             >  2:6069223/1‑140 (MQ=17)
                                                              cTCCTGTCATG‑TGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAAACGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAAACGCCGCTGCGCGGTGCCCTCGGCATATCCCATACgg                                                                              >  2:9555351/1‑140 (MQ=255)
                                                                   gTCATG‑TGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAAACGCCGCCGCCCCCAGCACCCCCCGGCTCTGGCGAACAAAATCGCCCCTGCGCGGTGCCCACGGCTTATCCCGTACGGCGAcc                                                                         >  2:4007584/1‑140 (MQ=17)
                                                                      aTG‑TGCATTGCTTCCTATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACACAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCggg                                                                      <  1:6522868/140‑1 (MQ=255)
                                                                          tgCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAAAACCCGCCGCCCCCTGCACCCCCCGGCACTGGCGAACAAAAACGCCGCAGCGCGGTGCCCACCGCGTAACCCTTACGGCTACCGGGTCg                                                                   >  2:7327435/1‑140 (MQ=14)
                                                                          tgCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCACGGGGCGGCCAAAAGCCGCCCCCCCCAGCCCCCCCAGGCTCTGGCGAACAAAATCGCCGCGTCGCGGGGCCCGCGGCATATCCCATACCGCTCCCCGGTCg                                                                   >  2:7276295/1‑140 (MQ=14)
                                                                              ttGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGgcg                                                               <  2:8172916/140‑1 (MQ=255)
                                                                              agacagcATATAATCCCTGGCGCAAGGCGCGCGCAGGGGGCGGCCAACCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGgcg                                                               <  1:7903418/134‑1 (MQ=11)
                                                                               tGCTTCATATAATCACTGGCGCAAGGAGCGCGCCGGGGGCGGCCCATACCCGCCCCCCCCAGCACCCCCCGGCTCAGGCGAACAAAAAAGCCCCAGCGCGGGGCCCACGGCGTATCCCGTACGGCTACCCGGTCGGgcgc                                                              >  2:3796927/1‑140 (MQ=14)
                                                                               tGCTTCATATAATCACTGGCGCAAGGAGCGCGCCGGGGGCGGCCCAAAGCCGCCGCCCCCAGCCCCCCCCCGCTCTGGCGGACCAAATAGCCCCTGCGCGGTGCCCACGGCGTATCCCATACCGCTACCGGGTCGGgcgc                                                              >  2:1705123/1‑140 (MQ=14)
                                                                               tGCTTCATATAATCACTGGCGCAAGGAGCGCGCCGGGGGCGGCCCAAACCCCCCCCCCCCAGCCCCCCCCGGCACATGCGCACAAAAAACCCCCGGCGCCGGGCCCGCCGCAGAAACCATACGGCGACCCGGTCGGgcgc                                                              >  2:315817/1‑140 (MQ=9)
                                                                               tGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGgcgc                                                              <  1:957779/140‑1 (MQ=255)
                                                                               tGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCAGCACCCCCCGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCACGGCTTATCCCTTAAGGCTACCCGGTCGGgcgc                                                              >  2:4939947/1‑140 (MQ=14)
                                                                               tGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAAACGCCGCCGCCCCCAGCACCCCCCGGCTCTGGCGAACCAAAAAGCCGCAGCGCGGGGCCCACGGCGTATCCCATACCGCAACCGGGTCGGgcgc                                                              >  2:3796357/1‑140 (MQ=14)
                                                                                gCTTCTTATAATCACTGGCGCACGGAGCGCGCTGGGGGCGCCCAATCGCCGCCGCCCCCGGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGcgcg                                                             <  1:9716305/140‑1 (MQ=14)
                                                                                 cttcttATAATCACTGGCGCAAGGAGCGCGCACGGGGCGCCCCAACCCCGCCCCCCCCAGCACCCCCGGGGGCCTGCGACCAAAAAAGCCGCAGCGCGCGGCCCTCCGCGTATCCCTAACCGCGACCGGGTCCGGcccgg                                                            >  2:8200045/1‑139 (MQ=9)
                                                                                 cTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCCCCGCCCCCAGCCCCCCCCGGCGCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCACGGCGTATCACTAACGGCTCCCGCGTCGGGCGCGa                                                            >  2:9870716/1‑140 (MQ=14)
                                                                                 cTTCATAGAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAAACGCCGCCGCCCCCATCCCCCCCCGGCTAGGGCGTCCCAAAAAGCCGCGGCGCGGTGCCCTCGGCTTATACCATACGGCTACAGGGGCgggggggg                                                            >  2:7010109/1‑135 (MQ=9)
                                                                                    cATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGt                                                         <  1:7709677/140‑1 (MQ=39)
                                                                                    cATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCCGCCAATAGCCGCCGCCCCCATCACCCCCGGGCACTGGCGAAAAAAATAGCCGCGGCGCGGTGGCCTCGGCTTATACCATAAGGCTACCCGGTCGGGCGCGAGGt                                                         >  2:4837964/1‑140 (MQ=14)
                                                                                    cATATAATCACTGGCGCAAGGAGCGCGCACGGGGCGGCCAAACGCCGCCGCCCCCAGCAACCCCCGGCTATTGCGAACAAAAACGCCGCAGCGCGGTGCCCTCGGCGTATCCCTTACGGCTACCGGGTCGGGCGCGAGGt                                                         >  2:10958358/1‑140 (MQ=14)
                                                                                      tataATCACTGGCGCAAGGAGCGCGGCGGGGGCGGCCCAAACCCCCCCCCCCCCGCCCCCCCCCGCGCAGGCGCAAAAAAAAGCCCCGGCGCGGTGGCCGCCGCGTATCCCATAACGCAACCCGGGGGGGCGCGAGGTaa                                                       >  2:1492493/1‑140 (MQ=2)
                                                                                      tataATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTaa                                                       <  2:1567543/140‑1 (MQ=37)
                                                                                      tataATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTaa                                                       <  1:211095/140‑1 (MQ=37)
                                                                                      tataATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTaa                                                       <  2:2433952/140‑1 (MQ=37)
                                                                                      tataATCACGGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTaa                                                       <  1:9134147/140‑1 (MQ=37)
                                                                                        taATCACTGGCGCATGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACa                                                     <  2:3109345/140‑1 (MQ=25)
                                                                                        taATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACa                                                     <  1:5149541/140‑1 (MQ=35)
                                                                                          aTCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATc                                                   <  1:11391522/140‑1 (MQ=33)
                                                                                           tCACTGGCGCAAGGAGCGCGCCGGGGGCGGCCAAAAGCCCCCCCCCCCAGCACCCCCCGGCTCTTGCGAACCAAAAAGCCCCGGCGCGGGGCCCGCCGCGTATACCATACGGCTACCCGGTCGGGCGCGAGGTAACAAcc                                                  >  2:5860849/1‑140 (MQ=2)
                                                                                           tCACTGGCGCAAGGAGCGCGCATGGGGCGGCCAATAGCCGCCGCCCCCAGCAACCCCGGGCTCAGGCGAACAAAATCGCCGCAGCTCGGTGGCCTCGGCTTTTCCCATAAGGCAACCGGGGCGGGCGCGCGGTTAcctgc                                                  >  2:11041777/1‑136 (MQ=11)
                                                                                           tCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCCATCGCCGCCGCCCCCATCAACCCCCGGCTCAGGCGACCAAAAACGCCGCGGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCTGGCGCGAGGTAACATcc                                                  >  2:8664216/1‑140 (MQ=11)
                                                                                           tCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAAACGCCGCCGCCCCCAGCACCCCCGGGCTCTGGCGAACAAAAACGCCGCTGCGCGGTGCCCACGGCTTATACCTTACGGCTACCCGGTCGGGCGCGAGGTAACAAcc                                                  >  2:8664127/1‑140 (MQ=11)
                                                                                                   gcAAGGAGCGCGCAGGGGGCGGCCAATAGCCGCCGCCCCCAGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTAGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTaaaa                                          >  2:11202395/1‑140 (MQ=12)
                                                                                                     aaGGCGCGCGCCGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAAcg                                        <  1:1003953/140‑1 (MQ=17)
                                                                                                     aaGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAACcg                                        <  2:4062506/140‑1 (MQ=17)
                                                                                                     aaGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAAcg                                        <  1:3632253/140‑1 (MQ=32)
                                                                                                        gAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCGCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAACACgcgc                                     <  2:5089600/140‑1 (MQ=17)
                                                                                                           cgcgcAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAATATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCt                                  <  1:9968730/140‑1 (MQ=17)
                                                                                                           cgcgcAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCt                                  <  1:6523709/140‑1 (MQ=32)
                                                                                                               ctgggggCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGc                              <  1:3159215/138‑1 (MQ=17)
                                                                                                               cAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGc                              <  1:9765156/140‑1 (MQ=32)
                                                                                                               cAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGc                              <  1:3991728/140‑1 (MQ=32)
                                                                                                                aGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGcc                             <  2:9138975/140‑1 (MQ=32)
                                                                                                                 gggggCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGccc                            <  2:11357942/140‑1 (MQ=32)
                                                                                                                    ggcggcCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCcaca                         <  1:3870122/140‑1 (MQ=32)
                                                                                                                    ggcggcCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCcaca                         <  1:3796357/140‑1 (MQ=32)
                                                                                                                    ggcggcCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCcaca                         <  1:5925705/140‑1 (MQ=32)
                                                                                                                       ggcCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGCGGTAACATCCCGGTAAATCGCGCCCTCAGCCCACATcc                      >  2:7609685/1‑140 (MQ=12)
                                                                                                                        gcCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACa                                                     >  1:10935844/1‑108 (MQ=32)
                                                                                                                        gcCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCa                     >  2:187924/1‑140 (MQ=32)
                                                                                                                        gcCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGGAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCa                     >  2:3564806/1‑140 (MQ=17)
                                                                                                                          cAATCGCCGCCGCCCCCTGCACCCCCGGGCTCGGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCAtg                   <  1:15657/140‑1 (MQ=17)
                                                                                                                            aTCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCAtgtg                 >  1:7809966/1‑140 (MQ=32)
                                                                                                                            aTCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCAtgtg                 >  1:9105057/1‑140 (MQ=32)
                                                                                                                            aTCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCAtgtg                 >  2:9666131/1‑140 (MQ=32)
                                                                                                                              cgccgccgcCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAATCGCGCCCTCAGCCCACATCCATGTggg               >  2:6722804/1‑140 (MQ=17)
                                                                                                                              cgccgccgcCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTggg               <  1:47730/140‑1 (MQ=32)
                                                                                                                              cgccgccgcCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTggg               >  1:8770072/1‑140 (MQ=32)
                                                                                                                                ccgccgccCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAAc                                                      <  2:8229422/99‑1 (MQ=33)
                                                                                                                                ccgccgccCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAAc                                                      >  1:8229423/1‑99 (MQ=33)
                                                                                                                                   ccgccCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAACACGCGCCCTCAGCCCACATCCATGGGGGCTGcc          >  1:1462488/1‑140 (MQ=17)
                                                                                                                                    cgccCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGccc         <  1:4381159/140‑1 (MQ=32)
                                                                                                                                    cgccCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGccc         <  1:2328255/140‑1 (MQ=32)
                                                                                                                                     gccCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCNTGTGGGCTGcccc        <  1:9847937/140‑1 (MQ=17)
                                                                                                                                     gccCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGcccc        <  1:1662212/140‑1 (MQ=32)
                                                                                                                                        cccTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGc     <  2:9361883/140‑1 (MQ=32)
                                                                                                                                           tGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCGCAGCCCACATCCATGTGGGCTGCCCCGGCCtt  >  1:1825902/1‑140 (MQ=17)
                                                                                                                                           |                                                                                                                                           
AATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATG‑TGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCTT  >  NZ_CP025268/2233101‑2233378

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑