BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP025268	1,293,179	A→G	noncoding (36/132 nt)	CXP41_RS06840 ←	RtT sRNA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	1,293,179	0	A	G	99.0%	516.3 / NA	196	noncoding (36/132 nt)	CXP41_RS06840	RtT sRNA
Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (56/138); minor base T (0/2); total (56/140)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 196 total aligned reads displayed.

CGGATTC‑GTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCA  >  NZ_CP025268/1293046‑1293304

cGGATTCGGTTGAGAA‑TTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTTCCAGAGGCAACGCTCTCACGCAGGCGCTCGAGAAGAAACATAGTCGAAg                                                                                                                         >  1:9791258/1‑140 (MQ=11)

         cttgagaGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCAt                                                                                                                 <  2:6197751/134‑1 (MQ=11)

         cttgagaGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCAt                                                                                                                 <  2:793078/134‑1 (MQ=11)

             agaGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGATACTTGGTCGAAGCTTCTCATCCtt                                                                                                             >  2:7259581/3‑140 (MQ=11)

                gTTCAGGGACTTTTGAAATTGATGGTGGTGGGGGAATGATTACTCAGCGCTGCGCGCTTCGCACTTCGGGACGTTGCATGTGGCAACGCTCTCTCGCATTCGCTCGAATCGAACCTTAGTCGAAGCTTCTCAACCTTacc                                                                                                          >  1:1546415/1‑140 (MQ=11)

                gTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCAGCGGCAACGCTCTCTCGCAGGCGCTCGAGTCGAACCATGGTCGAAGCTTCTCATACATccc                                                                                                          >  1:10702066/1‑140 (MQ=11)

                gTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCATGCGGCAACGCTCTCTCGCTGGCCCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTcac                                                                                                          >  2:6562525/1‑138 (MQ=11)

                  tCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCTCCCTTCGGGACGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTAGAATCGAACCTTAGTCGAAGGTTCTCAACCTTCCCCg                                                                                                        >  2:1482408/1‑140 (MQ=11)

                  tCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCg                                                                                                        >  2:8640369/1‑140 (MQ=255)

                    cgggACATTAGAAAGGGATGGGGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCa                                                                                                      <  1:3505594/139‑1 (MQ=11)

                    aGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCa                                                                                                      <  1:10209566/140‑1 (MQ=255)

                    aGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCACTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCAAACATCCCCGCa                                                                                                      >  1:8110145/1‑140 (MQ=11)

                    aGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTGGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGTAGCTTCTCATCCATCCCCGcc                                                                                                      >  1:8771324/1‑139 (MQ=11)

                        gcTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                                  <  2:296021/139‑1 (MQ=9)

                        acgtttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGGTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                                  <  1:8607227/137‑1 (MQ=11)

                        aCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                                  <  1:5537634/140‑1 (MQ=16)

                          ttttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTTCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                                <  1:2003173/140‑1 (MQ=255)

                          ttttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                                <  2:7066840/140‑1 (MQ=12)

                          ttttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTAGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                                <  2:9962491/140‑1 (MQ=255)

                           tttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTTGCGCTCGAGTCGAACCGTGGGAGAAGCAACACAAACTTCCCCGCGTGGGCac                                                                                               >  2:220437/1‑139 (MQ=11)

                           tttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCACATCCTTCCCCGCATGGGCAg                                                                                               >  1:9458215/1‑140 (MQ=255)

                                                          cTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGGTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTc                                                                <  2:3550264/140‑1 (MQ=12)

                                                              gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCAAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAggg                                                            <  1:894027/140‑1 (MQ=255)

                                                              gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAggg                                                            <  1:10112804/140‑1 (MQ=21)

                                                              gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAggg                                                            <  2:2816751/140‑1 (MQ=21)

                                                               cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCCACGCTCTATCGCTGGCGCTCAAGTCGAACCGTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATAGTTGATTGCGGATTCGGTGGACACTTCAgggg                                                           >  2:6644343/1‑139 (MQ=11)

                                                               cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGa                                                           >  2:756902/1‑140 (MQ=25)

                                                               cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGa                                                           <  1:11382254/140‑1 (MQ=25)

                                                               cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTACCCGCCTGGGCAGGATATTTGAGTGCGGATTCGGTTGTGAGTTCAgggg                                                           >  1:6558180/1‑139 (MQ=11)

                                                               cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCGCTCTCGCGGGCGCTCAAGGCGAACCTTGGGCGAAGCTTCTCATCCGTCCCCGCATGGGCAGCAGATTTTATTGCGGATTCGTTTGGGACTTCAgggg                                                           >  1:11049126/1‑139 (MQ=11)

                                                                    cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGGCGAACCTTTGTCGAAGCTTCTCATCCGTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGGTTGGAAGGTCAGGGACtgtt                                                      >  2:5429806/1‑140 (MQ=11)

                                                                    cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGGCGAACCTTAGTCGAAGCTTCTAATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTGGCGTGAGAGTTAAGGGAGtttt                                                      >  2:249945/1‑140 (MQ=11)

                                                                    cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTCGTCGAAGCTTCTCATCCTTCCCCGCATGGGCCGAATATTTGATTGCGGATTCGCGTGAGAGGTCAGGGCCgttt                                                      >  2:5746399/1‑140 (MQ=11)

                                                                    cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATCTTTTATTGCGGATTCGCTTGAGAGTTCAGGGACtttt                                                      >  2:5194581/1‑140 (MQ=255)

                                                                    cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCGTAGTCGAAGCTTCTCATCCTTCCCCGCATGTGCAGAAAATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACttgt                                                      >  2:2568241/1‑138 (MQ=11)

                                                                    cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCACTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGGTTCACAACCATCCCCGCAAGGGCAGAATATTTGATTTCGGTTTCGCGTGAGAGTTCAGGGACtttt                                                      >  1:2541727/1‑140 (MQ=11)

                                                                    cgcgcTTCGCCCTTCGGGTCGTTGCCGGCGGCAACGCTCTCTCGCGGTCGCTCGAGCCGAACCATAGTCGAAGCATATCATCCGTCCCCCCCTGGGCAGGATATTTGATTGCGGATTCGGTTGTGAGTTCAGGGACgttt                                                      >  1:4915596/1‑140 (MQ=11)

                                                                       gcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGaa                                                   <  1:9096376/140‑1 (MQ=255)

                                                                       gcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGaa                                                   <  1:2150111/140‑1 (MQ=255)

                                                                       gcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGaa                                                   <  1:8038782/140‑1 (MQ=255)

                                                                       gcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGaa                                                   <  2:8842809/140‑1 (MQ=255)

                                                                        cTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGaaa                                                  <  1:8308751/140‑1 (MQ=255)

                                                                         ttCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGGGAGTTCAGGGACTTTTGAAAg                                                 >  2:3460831/1‑140 (MQ=255)

                                                                         ttCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAg                                                 <  1:10117578/140‑1 (MQ=255)

                                                                          tCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGt                                                <  2:3131984/140‑1 (MQ=255)

                                                                            gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGACAGTGa                                              <  2:4177772/140‑1 (MQ=255)

                                                                            gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGa                                              <  1:10941770/140‑1 (MQ=255)

                                                                            gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGa                                              <  2:10529496/140‑1 (MQ=255)

                                                                            gCCCTTCGGGTCGTGGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGa                                              <  1:1922443/140‑1 (MQ=255)

                                                                            gCCCGTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGACGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGa                                              <  1:7149326/140‑1 (MQ=255)

                                                                             cccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCCTCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAt                                             <  2:9765094/140‑1 (MQ=255)

                                                                               cTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGCGCCGAACCTTAGTCGAAGCTTCTCCTCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtgg                                           <  2:10066501/140‑1 (MQ=255)

                                                                               cTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtgg                                           <  1:60441/140‑1 (MQ=255)

                                                                                 tCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtg                                         <  1:7377599/140‑1 (MQ=255)

                                                                                  cGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtgg                                        <  2:3404869/140‑1 (MQ=255)

                                                                                  cGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtgg                                        <  1:4823014/140‑1 (MQ=255)

                                                                                  cGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtgg                                        <  2:11406052/140‑1 (MQ=255)

                                                                                  cGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCAAGGGCAGAAAATTTGATTGCGGTTTCGGTTGAGAGTTCAGGGACGTTTGTAAGTGAtggggg                                        >  1:7475061/1‑140 (MQ=11)

                                                                                   ggggCGTTGCCTGCGGCAACGCTCGCGCGCTGCCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTGCCCCGCATGGGCAGAATATTTGAGTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtggt                                       <  2:8690977/140‑1 (MQ=11)

                                                                                   gggTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtggt                                       <  2:11347191/140‑1 (MQ=255)

                                                                                   gggTCGGTGCCTGCGGCAACGCTCTCGCGCTGACGCTCGAGCCGAACCTGAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtgggggt                                       <  2:5892565/140‑1 (MQ=11)

                                                                                      tCGTTGCCTGCGTCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggg                                    <  2:4803544/140‑1 (MQ=255)

                                                                                      tCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCCTCCGTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggg                                    <  2:1026564/140‑1 (MQ=255)

                                                                                      tCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggg                                    <  1:1272426/140‑1 (MQ=255)

                                                                                        ggtGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                                  <  2:7111135/138‑1 (MQ=255)

                                                                                        gTTGCCTGCGGCTACGCTCTCTCGCTGTCGCTCTAGCCGAAGCTTTGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGATTGAGATTTCTGGGACTTTTGAAAGTGATGGTGGTggggg                                  <  1:7563266/140‑1 (MQ=11)

                                                                                        gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGATAGTTCAGGGACTTTTGAATGTGATGGTGGTgggtg                                  <  1:8640655/140‑3 (MQ=11)

                                                                                        gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                                  <  1:1131804/140‑1 (MQ=255)

                                                                                        gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                                  <  2:9579452/140‑1 (MQ=255)

                                                                                        gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                                  <  1:5215144/140‑1 (MQ=255)

                                                                                        gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                                  <  1:5908081/140‑1 (MQ=255)

                                                                                        gTTGCCTGCGGCAACCCTCTATCGCAGGCGCTAAACTCGAACCTTGGTCGAAGCATCTCATCCATCCCCGCATGGGCAGAATATTTTATTTCGGATTCGGTTGAAAATTCAGGGAATTTTGAAAGTGATGGGGGTgtggg                                  >  2:4342723/1‑140 (MQ=2)

                                                                                        gTTGCCAGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                                  <  2:10880086/140‑1 (MQ=255)

                                                                                          tGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCAACCTTCCCCGCTTGGGCAGAATATTTTATTGCGGATTCGGTTGGTATTTCAGGGACTTTTGACAGTGATGGTGGTGGGGGaa                                >  2:8943129/1‑140 (MQ=11)

                                                                                          tGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCATCTCATCCTTCCCCGCATGGGCAGAATATTTTATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGaa                                >  2:539665/1‑140 (MQ=255)

                                                                                           gCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAg                               <  1:675454/140‑1 (MQ=255)

                                                                                             cTGCGGCAACGCTCTCTCGCTGGCGCTCTAGTCGAAACTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCATAATATTTGATTGCGGATTCGATTGAGTGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGa                             <  1:645608/140‑1 (MQ=11)

                                                                                             cTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCGTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGa                             <  2:1326472/140‑1 (MQ=255)

                                                                                             cTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGa                             <  1:10306930/140‑1 (MQ=255)

                                                                                             cTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGa                             <  1:1735475/140‑1 (MQ=255)

                                                                                             cTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGa                             <  1:2773497/140‑1 (MQ=255)

                                                                                             cTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGa                             <  1:4605792/140‑1 (MQ=255)

                                                                                             cTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGa                             <  1:798255/140‑1 (MQ=255)

                                                                                             cTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGATTGAGAGTTCATGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGa                             <  1:2789410/140‑1 (MQ=255)

                                                                                             cTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCGTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGa                             <  1:3670594/140‑1 (MQ=255)

                                                                                             cTGCGGCAACGCTCTCTCGCTGACGCTCGAGCAGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGa                             <  2:9359140/140‑1 (MQ=11)

                                                                                              tGCGGCAACGCTCTCAAGCTGACGCTAGAGCCGAACCTTAGTCGAAGCTTATCATCCTACCCCGCAAGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTTAAAGTTTTGGTGGTGGGGGAAGGAt                            >  2:4404772/1‑140 (MQ=11)

                                                                                                  gCAACGCTCTCTCGCTGACGCTCGAGACGAACCTTCGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGATTGAGATTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAttact                        <  1:2468756/140‑4 (MQ=11)

                                                                                                  gCAACGCTCTCTCGCTGACGCTCGAGACGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAttact                        <  2:8018808/140‑4 (MQ=11)

                                                                                                  gCAACGCTCTCTCGCTGACGCTCGACCCTAACCTTTGTCGAAGCTTCTCATCCGTCCCCGCATTGGCAGACTATTTGATTGCGGATTCGCTAGAGTGTTCAGGTACTTTTGAAAGTGATGGTGGTGGGGGAAGGAttact                        <  1:7694627/140‑4 (MQ=11)

                                                                                                   cAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAttactc                       >  2:10701858/1‑136 (MQ=255)

                                                                                                    aaCGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAttactca                      <  1:3774637/140‑6 (MQ=255)

                                                                                                     aCGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCCTCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAttactcag                     <  2:2370601/140‑7 (MQ=11)

                                                                                                      cGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAttactcagc                    >  2:361350/1‑133 (MQ=255)

                                                                                                                     gcTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAg                               >  2:3270281/1‑114 (MQ=255)

                                                                                                                     gcTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAg                               <  1:3270281/114‑1 (MQ=255)

                                                                                                                      cTCGAGTCGAACCTTAGTCGTAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGTTTGAGAGTTCTGGGTCTTTTGAAAGTGATGGTGGTGGGGGAATGATTCGAACCTTCGAAGTCGATGACgg    <  1:8330180/140‑1 (MQ=17)

                                                                                                                      cTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACgg    <  1:6498675/140‑1 (MQ=14)

                                                                                                                        caagtcGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCTGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGTGAAGGATTCGAACCTTCGAAGTCGATGACGGCa  <  1:4283344/135‑1 (MQ=14)

                                                                                                                        cGAGCCGAACCTTAGACGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCa  <  1:9286857/140‑1 (MQ=255)

CGGATTC‑GTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCA  >  NZ_CP025268/1293046‑1293304

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`