| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 1,624,777 | A→G | *128* (TAA→TAG) | marA → | MDR efflux pump AcrAB transcriptional activator MarA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 1,624,777 | 0 | A | G | 99.7% | 2053.9 / NA | 590 | *128* (TAA→TAG) | marA | MDR efflux pump AcrAB transcriptional activator MarA |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (308/279); minor base T (0/2); total (308/282) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.27e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 590 total aligned reads displayed.
CGATATGGCTTCGAGTCGCAACAAACTCTGACCCGAACCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAATTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTC‑TTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGCCAGTTGTTACTTCTTGTGCCAATGTC > NZ_CP025268/1624640‑1624913 | ctagatGTCTTCGAGTCGCAAAAAACTATCACCCCAAACTTCAAAAATAACTTTGATGTTCCGCCGCATAAAAACCGGATTAAAAATATTCATGGCGAATCGAGCAAATTACATCCATTAAAACTTTACATCAGCTAGtt > 2:1312506/5‑140 (MQ=255)cGATATGGCTTCGAGTCGCAACAAACTCTGACCCGAACCTTCAAAAATTACTTTGATGTTCCGCCGCATCAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGtt > 2:6174677/1‑140 (MQ=255)cGATATGGCTTCGAGTCGCAACAAACTCTGACCCGAACCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGtt > 1:4599776/1‑140 (MQ=255)cGATATGGCTTCGAGTCGCAACAAACTCTGACCCGAACCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGtt > 1:9331280/1‑140 (MQ=255)cGATATGGCTTCGAGTCGCAACAAACTCTGACCCGAACCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGtt > 2:4655806/1‑140 (MQ=255) tatGGCTTCGAGTCGCAACAAACTCTGACCCGAACCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGaa < 1:1780307/140‑1 (MQ=255) atGGCTTCGAGTCGCAACAAACTCTGACCCGAACCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCTGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGaaa > 2:9676257/1‑140 (MQ=255) atGGCTTCGAGTCGCAACAAACTCTGACCCGAACCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGaaa > 1:9500438/1‑140 (MQ=255) ggCTTCGAGTCGCAACAAACTCTGACCCGAACCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAAc < 1:11136183/140‑1 (MQ=255) cTTCGAGTCGCAACAAACTCTGACCCGAACCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGt > 1:9959158/1‑140 (MQ=255) aGTCGCAACAAACTCTGACCCGAACCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGACTCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACaa > 2:1901799/1‑140 (MQ=255) aGTCGCAACAAACTCTGACCCGAACCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACaa < 2:2297788/140‑1 (MQ=255) aGTCGCAACAAACTCTGACCCGAACCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACaa > 2:7814638/1‑140 (MQ=255) aGTCGCAACAAACTCTGACCCGAACCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAATAATTACAACAGCTAGTTGAAAACGTGACaa > 1:4958291/1‑140 (MQ=255) caacaaACTCTGACCCGAACCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCa > 1:10818322/1‑140 (MQ=255) caacaaACTCTGACCCGAACCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCa > 1:2620110/1‑140 (MQ=255) tctGACCCGAACCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCa < 1:10163934/140‑1 (MQ=255) gACCCGAACCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGANAACGTGACAACGTCACTGAGGCAATc > 1:6937071/1‑140 (MQ=255) cccGAACCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCAt < 1:2419049/140‑1 (MQ=255) cccGAACCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCAt < 1:8708253/140‑1 (MQ=255) cGAACCTTCAAAAATTACTTAGATGTTCCGCCGCAAAACGACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACAGCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGCGGCAATCAtca < 2:5342454/140‑3 (MQ=255) aaCCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGaaa > 1:8133394/1‑140 (MQ=255) aCCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATAACGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATAACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAAc > 1:11362783/1‑140 (MQ=255) tCAAAAATTACTTTGATGTTCCGCCGNATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCANTCATGAAACCACt < 1:6062537/140‑1 (MQ=255) tCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACt > 2:7567130/1‑140 (MQ=255) tCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACt > 1:6328484/1‑140 (MQ=255) tCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACt > 2:4045579/1‑140 (MQ=255) cAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACtt < 2:8693253/140‑1 (MQ=255) agtACTCTGATGTTCCGCCGCAAAAATACCGGATGACCAATCTGCAGGGCGAATCGCGCTATTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATc < 2:9041676/138‑1 (MQ=255) aTTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATc < 2:4735098/140‑1 (MQ=255) aTTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATc < 1:8956890/140‑1 (MQ=255) ttACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATcc < 1:10003401/140‑1 (MQ=255) aCTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGc > 2:3298289/1‑140 (MQ=255) aCTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGc > 2:5715009/1‑140 (MQ=255) ttCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATagcagc < 1:3232141/140‑1 (MQ=255) ccgccgCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTg < 2:1747909/140‑1 (MQ=255) gccgcATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTG‑AAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTgcgc < 1:10609670/140‑1 (MQ=255) ccgcATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTgcgc < 1:3134048/140‑1 (MQ=255) ccgcATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTgcgc > 1:6849893/1‑140 (MQ=255) ccgcATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTgcgc < 1:4045579/140‑1 (MQ=255) gcATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCtt < 1:7297018/140‑1 (MQ=255) gcATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCtt < 2:3649489/140‑1 (MQ=255) tAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTAtt < 2:9510812/140‑1 (MQ=255) cGGCTGACCAATATGCAGGGCGAATCGCTCTTTTAACCTCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTC‑tttt < 2:10208024/140‑1 (MQ=255) gATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTC‑TTTTcc > 2:5566294/1‑140 (MQ=255) gATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTC‑TTTTcc > 2:7104338/1‑140 (MQ=255) gACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTC‑TTTTCcgcg < 2:9355890/140‑1 (MQ=255) gACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTC‑TTTTCcgcg < 2:10427624/140‑1 (MQ=255) aCCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTC‑TTTTCCgcgc > 1:7908043/1‑140 (MQ=255) ccAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTC‑ATTTCCGCGCa < 1:5627780/140‑1 (MQ=255) atatGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTC‑TTTTCCGCGCAggg < 1:8480404/140‑1 (MQ=255) atatGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTC‑TTTTCCGCGCAggg < 1:2719219/140‑1 (MQ=255) atGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCCC‑TTTTCCGCGCAGGGCg < 2:2905469/140‑1 (MQ=255) cAGGGCGAATCGCGCTTTGTACATCCATTAAATCATGACAACAGCTAGTTGAAAACGAGACAACGTCACTGAGGCAATCATGAAACCACTTTCATACGCAATAGCAGCTGCGCTTATTCTC‑TTGTCCGCGCAGGGCGTTg < 1:8319697/140‑1 (MQ=255) gggCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTC‑TTTTCCGCGCTGGGCGTTGCg > 2:7531546/1‑140 (MQ=255) gggCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTC‑TTTTCCGCGCAGGGCGTTGCg > 1:7429931/1‑140 (MQ=255) ggCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCACTAGCAGCTGCGCGGATTCTC‑TTTTCCGCGCAGGGCGTTGAgg > 2:11198439/1‑140 (MQ=255) ggCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTC‑TTTTCCGCGCAGGGCGTTGCgg > 2:10654228/1‑140 (MQ=255) ggCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTC‑TTTTCCGCGCAGGGCGTTGCgg > 1:4225952/1‑140 (MQ=255) ggCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTAGTCTC‑TTTTCCGCGCAGGGCGTTGCgg > 1:3825452/1‑140 (MQ=255) gAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTC‑TTTTCCGCGCAGGGCGTTGCGGAAc < 1:1398980/140‑1 (MQ=255) aaTCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTC‑TTTTCCGCGCAGGGCGTTGCGGAACa < 2:6033352/140‑1 (MQ=255) aTCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCACTCATGAAACCACTTTCATCCGCAATAGCAGATGCGCTTATTCTC‑TTTTCCGCGCAGGGCGTGGCGGAActa > 2:7005719/1‑138 (MQ=255) aTCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTC‑TTTTCCGCGCAGGGCGTTGCGGAACaa > 1:6665606/1‑140 (MQ=255) aTCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTC‑TTTTCCGCGCAGGGCGTTGCGGAACaa > 2:5872291/1‑140 (MQ=255) aTCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTC‑TTTTCCGCGCAGGGCGTTGCGGAACaa > 2:2642744/1‑140 (MQ=255) aTCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTAGTCTC‑TTTTCCGCGCAGGGCGTTGCGGAACaa > 1:8194471/1‑140 (MQ=255) gcTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGAAGCTGCGCTTATTCTC‑TTTTCCGCGCAGGGCGTTGCGGAACAAAcccc < 2:50141/140‑3 (MQ=255) cTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTC‑TTTTCCGCGCAGGGCGTTGCGGAACAAACCACg < 2:8510801/140‑1 (MQ=255) tttACATCCATTAAATCATTACCACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTC‑TTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAg < 1:9131236/140‑1 (MQ=255) tttACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTC‑TTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAg < 1:7615203/140‑1 (MQ=255) tttACATCCATTAAATCATTACAACAGCTAGTAGAAAACGTGACAACTTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTGATTCTC‑TTATCCGCGCAGGGCGTTGCGGAACAAACCACGCAg > 2:3827054/1‑140 (MQ=255) gtACATCCATTAAATCATTACAACAGCTAGTACAAAACGTCACAACGTCACATAGGCAATCAACCAACCACTTTCATCCGGAATAGCAGCGGCCCGTATTCCC‑TTATCCCCGCAGGGCGTTGCGGAACCAACCACGCAGc < 2:3489453/139‑1 (MQ=255) tACATCCCATAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGc < 2:10921096/140‑1 (MQ=255) tACATCCATTAAATCATTACAACCGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTC‑TTTTCCGCGCAGGGCGTTGCGGAACAACCCACGCAGcc < 2:2444944/140‑1 (MQ=255) tACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCACTAGCAGCTGCGCTTATTCTC‑TTTTCCGCGCAGGGCGTTGCGGAACAAACCACgccgcc < 2:2013708/140‑1 (MQ=255) tACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTC‑TTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGcc < 1:1642477/140‑1 (MQ=255) cATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTC‑TTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGCCAg < 2:2171941/140‑1 (MQ=255) cATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTC‑TTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGCCAgttgt > 1:576022/1‑140 (MQ=255) cATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTC‑TTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGCCAgttgt > 1:3670987/1‑140 (MQ=255) cATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTC‑TTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGCCAgttgt > 1:4708425/1‑140 (MQ=255) ttAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCAAGAAGCCACTTTCATCCGCTATAGCAGCTGCGCTTATTCTC‑TTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGGCAGTTGTTa > 2:7304750/1‑140 (MQ=255) aTCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTC‑TTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGCCAGTTGTTActtc < 1:10696613/140‑1 (MQ=255) aTCATGACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTC‑TTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGCCAGTTGTTActtc < 1:1268033/140‑1 (MQ=255) tCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTC‑TTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGCCAGTTGTTActtct < 1:2833212/140‑1 (MQ=255) tCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTC‑TTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGCCAGTTGTTActtct < 2:6791022/140‑1 (MQ=255) aTTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTC‑TTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGCCa < 1:10407690/126‑1 (MQ=255) aTTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTC‑TTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGCCAGTTGTTACTTCTtg > 1:3336767/1‑140 (MQ=255) ttACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTC‑TTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGCCAGTTGTTACTTCTtgt > 1:5864198/1‑140 (MQ=255) tACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCtt < 1:5454496/79‑1 (MQ=255) tACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTC‑TTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGCCAGTTGTTACTTCTtgtg > 2:3040046/1‑140 (MQ=255) acaacaGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTC‑TTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGCCAGTTGTTACTTCTTGTGc < 1:5257753/140‑1 (MQ=255) caacaGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTC‑TTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGCCAGTTGTTACTTCTTGTGcc < 2:1535686/140‑1 (MQ=255) aacaGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTC‑TTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGCCAGTTGTTACTTCTTGTGCCa < 2:8245457/140‑1 (MQ=255) aacaGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTC‑TTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGCCAGTTGTTACTTCTTGTGCCa < 2:6311177/140‑1 (MQ=255) acaGCTAGTTGAAAACGTGACAACGTCACTGAGGCACTCATGAAACCACTTACATCCGCAATAGCAGCTGCGCTTATTCTC‑TTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGCCAGTTGTTACTTCTTGTGCCaa < 1:9729842/140‑1 (MQ=255) acaGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTC‑TTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGCCAGTTGTTACTTCTTGTGCCaa < 2:4562881/140‑1 (MQ=255) acaGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTC‑TTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGCCAGTTGTTACTTCTTGTGCCaa < 1:2127124/140‑1 (MQ=255) cTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTC‑TTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGCCAGTTGTTACTTCTTGTGCCAATGTc > 2:1172190/1‑140 (MQ=255) cTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTC‑TTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGCCAGTTGTTACTTCTTGTGCCAATGTc > 2:6605444/1‑140 (MQ=255) | CGATATGGCTTCGAGTCGCAACAAACTCTGACCCGAACCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAATTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTC‑TTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGCCAGTTGTTACTTCTTGTGCCAATGTC > NZ_CP025268/1624640‑1624913 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |