| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 1,762,540 | T→C | pseudogene (1000/1000 nt) | ldtE ← | L,D‑transpeptidase LdtE |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 1,762,540 | 0 | T | C | 99.2% | 1625.3 / NA | 470 | pseudogene (1000/1000 nt) | ldtE | L,D‑transpeptidase LdtE |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (259/207); minor base A (4/0); total (263/207) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.34e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 471 total aligned reads displayed.
TTCAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGTTACTGCGTCACGCGTAACATATTCCCTTG‑‑C‑‑‑‑‑TTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAAC > NZ_CP025268/1762403‑1762667 | ttCAGGCTGCTAAAGATGACGCAGCTNGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTNCCGTTTACCGCTa < 1:6062427/140‑1 (MQ=255)ttCAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGGAAGTACTAGTACCTGGGAAGTGAATATTGGCGCTCCTTGTGCGCAATTGTGTGTGTCTGCGGTGTACCGCTa > 2:10655393/1‑140 (MQ=255)ttCAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTa < 1:8895053/140‑1 (MQ=255) cAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACt < 1:10055780/140‑1 (MQ=255) aGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTg > 2:6609252/1‑140 (MQ=255) ctgctAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGt < 1:3562109/140‑1 (MQ=255) tgctAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTc < 1:6712708/140‑1 (MQ=255) tAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCAcg > 2:3129942/1‑140 (MQ=255) tAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCAcg > 1:1853841/1‑140 (MQ=255) tAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAAAAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCAATTTATTTGTCTGCCGTTTACCGCTACTGCGTCAcg > 1:5805785/1‑140 (MQ=255) aaaGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTGTCTGCCGTTTACCGCTACTGCGTCAcgcg < 1:8527918/140‑1 (MQ=255) cgcgtGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCAcgcg > 2:4001425/5‑140 (MQ=255) aaGATGACGCAGCTCGTGCTAACCAGCGTCTTGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCAcgcg < 2:6294423/140‑1 (MQ=255) aGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGt < 2:5632597/140‑1 (MQ=255) aGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGt < 2:4489491/140‑1 (MQ=255) aTGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTaa > 1:4631196/1‑140 (MQ=255) cGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTCAATACCGCACGTCATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCCTGTTGTTTGTCTGCCGTTGACCGCTACTGCGTCACGCGTAACata > 2:8439855/1‑140 (MQ=255) cGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACata > 1:2040157/1‑140 (MQ=255) cGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACata < 2:5210362/140‑1 (MQ=255) cGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACata > 1:1607133/1‑140 (MQ=255) cGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACata > 1:5386473/1‑140 (MQ=255) cGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGAATGCCGTTAACCGATACTGCTGCACGCGAACCata > 1:1189311/1‑140 (MQ=255) cGCAGCTCGTGCTAACCAGCGTCAGGACAACATGGCTACGAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACaga > 1:621699/1‑138 (MQ=255) aGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTc > 2:2300526/1‑140 (MQ=255) aGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTc > 1:10820233/1‑140 (MQ=255) aGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTc > 2:8234217/1‑140 (MQ=255) cTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctc < 2:11441997‑M1/140‑3 (MQ=255) cTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctc < 2:7275441‑M1/140‑3 (MQ=255) aCCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctgg > 1:562756‑M1/1‑135 (MQ=255) ccAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggt > 1:3680377‑M1/1‑134 (MQ=255) gCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttca < 1:8999005‑M1/140‑10 (MQ=255) gCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttca > 1:8748101‑M1/1‑131 (MQ=255) gCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCGGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACAGCTTCTGCGTCACGCGTTACAAATTCCCTTG‑‑Ctctggttca > 2:11112068‑M1/1‑131 (MQ=255) cGTCTGGACAACATGGCTACTCAATACCGCAAGTAATAGTACCTGTGAAGTGAAATTTGGCGCACATTGTGCGCCAGTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttcac > 2:1274766‑M1/1‑130 (MQ=255) tGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttcaccatt > 2:10919958‑M1/1‑126 (MQ=255) gACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAATTGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCGTG‑‑Ctctggttcaccattct > 2:10614568‑M1/1‑124 (MQ=255) acaTGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAATTGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttcaccattctgcgc > 1:809901‑M1/1‑120 (MQ=255) acaTGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttcaccattctgcgc < 2:9223317‑M1/140‑21 (MQ=255) caTGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttcaccattctgcgct < 1:78977‑M1/140‑22 (MQ=255) caTGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttcaccattctgcgct > 1:2620089‑M1/1‑119 (MQ=255) caTGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttcaccagtctgcgct > 1:9715991‑M1/1‑119 (MQ=255) caTGGCTACTAAATACCGCAAGTAATAGTACCTGAGTAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGATACTGCGTCACGCGTAACAAATTACCTTG‑‑Ctctggttcaccattctgcgct > 2:2178161‑M1/1‑119 (MQ=255) caTGGCTACTAAAGACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttcaccattctgcgct < 2:7211921‑M1/140‑22 (MQ=255) ggCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttcaccattctgcgctgac < 2:3798908‑M1/140‑25 (MQ=255) gCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttcaccattctgcgctgact < 2:5513019‑M1/140‑26 (MQ=255) ctactaAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttcaccattctgcgctgactc > 1:7229697‑M1/1‑114 (MQ=255) aCCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttcaccattctgcgctgactctactgaagg > 2:9614221‑M1/1‑105 (MQ=255) cGCAAGTAATAGTACCTGTGAAGTGAAAATTGGCGCACATTGTGCGCCATTTGTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGGTCTGG‑‑TTCACCATTCTGCGCTGACTCTACTGACGgcg > 1:10220589/1‑140 (MQ=255) cGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttcaccattctgcgctgactctactgaaggcg > 2:773531‑M1/1‑103 (MQ=255) cGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttcaccattctgcgctgactctactgaaggcg > 2:10342991‑M1/1‑103 (MQ=255) gCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttcaccattctgcgctgactctactgaaggcgc < 1:9774896‑M1/140‑39 (MQ=255) cAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttcaccattctgcgctgactctactgaaggcgca > 1:2645462‑M1/1‑101 (MQ=255) cAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Atctggttcaccattctgcgctgactctactgaaggcgca > 2:167991‑M1/1‑101 (MQ=255) cAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTGTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTCACATATTCCCTTG‑‑Ctctggttcaccattctgcgctgactctactgaaggcgca > 2:4164023‑M1/1‑101 (MQ=255) cAAGTAATAGTACCTGTGAAGGGAAAAATGGCGCACATTGTGCGCCTTTGTTTTTGTCGGCCGTTTACCGCTACTGCGTCACGCGTATAATATTCCCTTG‑‑Ctctggttcaccattctgcgctgactctactgaaggggca > 2:4765008‑M1/1‑101 (MQ=255) aGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttcaccattctgcgctgactctactgaaggcgcattgctggc > 1:6458753‑M1/1‑93 (MQ=255) aCCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttcaccattctgcgctgactctactgaaggcgcattgctggctgc > 2:3646811‑M1/1‑90 (MQ=255) tgtgAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcggg < 2:9861035‑M1/140‑54 (MQ=255) tgtgAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcggg > 2:10149919‑M1/1‑87 (MQ=255) tgtgAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATAGTCCCTTG‑‑Ctctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcggg < 2:7923777‑M1/140‑54 (MQ=255) tgtgAAGTGAAAAATGGCGCACATTGTGCGCCAATTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttctccattctgcgctgactctactgaaggcgcattgctggctgcggg > 2:2729527‑M1/1‑87 (MQ=255) cgagcagtgaaAACTGGCGCACATTGGGCGCCATTTTTTGTGTCTGCCGTTTCCCGCTACTGCGTCACGCGTACCATATGCCCGTG‑‑CTCTGGTTCACCATTCGGCGCTGACTCTCCTGCAGGCGCATTGCTGGCTGCggg < 1:4167595/135‑1 (MQ=255) gtgaagtgaaAAATGGCGCACCTTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcggga > 1:1506624‑M1/1‑86 (MQ=255) gtgaagtgaaAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcggga > 1:11076888‑M1/1‑86 (MQ=255) gtgaagtgaaAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttcaccattctgcgc > 1:2194676‑M1/1‑86 (MQ=255) gtgaagtgaaAAATGGCGCACATTGTGCGCCATTTTTTTTGTATGCCGGTTACCGCGACTGCGTAACGCGTAACAAATTCCCTTG‑‑Ctctggttcaccattctgcgcttacactacggaaggcgcattgctggctgcgggg > 1:3956800‑M1/1‑86 (MQ=255) gtgaagtgaaAAATGGCGCACATTGTGCGCCATTTTTTATGTCTGCCGTTTACCGCTACTTCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttctccattctgcgctgactctactgaaggcgcattgatggctgctgga > 2:7801599‑M1/1‑86 (MQ=255) gtgaagtgaaAAATGGCGCACATTGGGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTCACATATTCCCTTG‑‑Ctctggttcacccttctgcgctgactctactgaaggcgcattgctggctgcggga > 2:5912708‑M1/1‑86 (MQ=255) gaagtgaaAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagt < 1:947109‑M1/140‑57 (MQ=255) gaagtgaaAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACCGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagt < 2:9303681‑M1/140‑57 (MQ=255) gtgaaAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgc > 1:5416403‑M1/1‑81 (MQ=255) gtgaaAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgc > 1:9920210‑M1/1‑81 (MQ=255) gtgaaAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGATACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgc > 1:7017468‑M1/1‑81 (MQ=255) aaTGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccact > 2:2076240‑M1/1‑75 (MQ=255) aTGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactg < 1:10000367‑M1/140‑67 (MQ=255) aTGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactg < 1:635397‑M1/140‑67 (MQ=255) tGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgc > 1:8289956‑M1/1‑73 (MQ=255) gcgcACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctc > 2:2448041‑M1/1‑71 (MQ=255) caTTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccga < 2:6089474‑M1/140‑75 (MQ=255) tgtgCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaac > 1:6865049‑M1/1‑63 (MQ=255) tgtgCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttcaccattatgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaac > 2:4631353‑M1/1‑63 (MQ=255) tgCGCCAGTTTTGTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgacaccg > 2:1835512‑M1/1‑61 (MQ=255) ccATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggata < 2:5428360‑M1/140‑84 (MQ=255) ccATTTATTTTGTCTGCCGTTTACCGNTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggata < 1:6937751‑M1/140‑84 (MQ=255) aTTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggatacc > 1:491617‑M1/1‑55 (MQ=255) aTTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggatacc > 1:7705695‑M1/1‑55 (MQ=255) ttttttttGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccc < 2:3445165‑M1/140‑87 (MQ=255) ttttttGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctg < 1:7499353‑M1/140‑89 (MQ=255) ttttttGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctg < 2:5044088‑M1/140‑89 (MQ=255) ttttGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctgcc < 2:3013836‑M1/140‑91 (MQ=255) tttGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctgccc < 2:7022242‑M1/140‑92 (MQ=255) tGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctgcccga < 2:8767523‑M1/140‑94 (MQ=255) gTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccgga < 1:5096711‑M1/127‑82 (MQ=255) cTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctgcccgacga > 1:11298239‑M1/1‑44 (MQ=255) cTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctgggtcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgatccactgctcaccgaaaccggataccctgcccgacga > 1:3010317‑M1/1‑44 (MQ=255) tGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctgcccgacgat > 2:7486304‑M1/1‑43 (MQ=255) tGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctgcccgacgat > 1:10547554‑M1/1‑43 (MQ=255) gCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctgcccgacgata < 2:8995948‑M1/140‑99 (MQ=255) gCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctgcccgacgata > 1:3252351‑M1/1‑42 (MQ=255) tttACCGCTACTGCGTCACGCGTAACATATTCCCTTG‑‑Ctctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctgcccgacgatacaac < 2:4676830‑M1/140‑103 (MQ=255) | TTCAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGTTACTGCGTCACGCGTAACATATTCCCTTG‑‑C‑‑‑‑‑TTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAAC > NZ_CP025268/1762403‑1762667 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |