| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 3,133,646 | T→C | intergenic (+147/+3) | CXP41_RS16295 → / ← yghQ | IS5‑like element IS5 family transposase/lipopolysaccharide biosynthesis protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 3,133,646 | 0 | T | C | 92.4% | 1254.3 / 69.0 | 423 | intergenic (+147/+3) | CXP41_RS16295/yghQ | IS5‑like element IS5 family transposase/lipopolysaccharide biosynthesis protein |
| Reads supporting (aligned to +/- strand): ref base T (20/12); new base C (152/236); total (174/249) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.41e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 476 total aligned reads displayed.
GGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCTTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACCAGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGCCACCAGAATACCGATTCCGCCCGCCAGTAAACCGGACTTCACACCTAACAACC > NZ_CP025268/3133507‑3133782 | ggATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCAccttcct < 1:9911710/140‑1 (MQ=11)ggATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCAccttcct < 1:8455828/140‑1 (MQ=11)ggATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCAccttcct > 1:3249108/1‑140 (MQ=11)ggATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCAccttcct > 2:2300029/1‑140 (MQ=11) aaCGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATATTCGCACCTTCCTTa > 2:8836473/1‑140 (MQ=12) aaCGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCAccttcct > 1:3111859/1‑136 (MQ=11) aaCGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCAccttcct < 2:3111155/136‑1 (MQ=11) aaCGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCTTata > 1:1413173/1‑138 (MQ=11) aaCGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCTTaat > 1:6760738/1‑139 (MQ=14) cGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCTTaataa > 1:2784581/1‑137 (MQ=1) cGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCTTaataa > 1:3622010/1‑137 (MQ=1) tAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTc > 1:1216965/1‑140 (MQ=18) tAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTc > 1:744848/1‑140 (MQ=18) tAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTc > 1:10846292/1‑140 (MQ=18) aaaagtcGAAGAAACGGTATAAATAGGCTGATACAAGGCTTTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGTAATGACTGAGACAGCCGAGAAGAATTTCCCCGCT‑‑AATTCGCACCTTCCCTAAATCAGGTCa < 2:4509170/134‑1 (MQ=11) ctGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACCTGAAGAAATGAACTGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATa < 2:8934979/139‑1 (MQ=255) aTGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATa < 2:4117149/140‑1 (MQ=25) ggCGAAGAAACGGTCTAAATAGGCTGATTCAAGTCATTTACGGGAGAAAACATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACg < 2:1881221/140‑1 (MQ=255) gCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGc > 1:6295975/1‑140 (MQ=38) cGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCt > 2:3398040/1‑140 (MQ=255) cGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCt < 1:4930173/140‑1 (MQ=255) gaagaaACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCtt > 1:8105170/1‑140 (MQ=255) gaagaaACGGTCTAAATACCCTGATTCAAGGCATTGACGGTAGAAAACATCGGCTCAAACATCAAGAAATTAAATGACTGAGTCAGCCGAGAAGAATTTACCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCtt < 2:1624227/140‑1 (MQ=14) agaaACGGTCTAAATATGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑GATTCGCACCTTCCCTAAATCAGGTCATACGCTTCg < 2:2379059/140‑1 (MQ=255) agaaACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCg < 2:3637360/140‑1 (MQ=255) agaaACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCg < 2:3249981/140‑1 (MQ=255) agaaACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCg < 2:7286800/140‑1 (MQ=255) aaaCGGTCTAACTAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCgag < 1:7095814/140‑1 (MQ=255) gTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACt > 2:7868514/1‑140 (MQ=255) gTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACt < 2:11180300/140‑1 (MQ=255) gTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACt > 1:5409620/1‑140 (MQ=255) tCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACtt < 1:5185419/140‑1 (MQ=255) tCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACtt < 1:2370627/140‑1 (MQ=255) aGGCTGATTCATGGCATTTACGGGAGAAAAATTCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTGCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCa < 2:9434826/140‑1 (MQ=255) aGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCa < 2:6565586/140‑1 (MQ=255) aGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCa < 1:11388709/140‑1 (MQ=255) gCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCaaa > 1:6646974/1‑140 (MQ=255) gCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCaaa > 1:3780278/1‑140 (MQ=255) gCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCaaa < 2:6748097/140‑1 (MQ=255) gCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCaaa > 2:10688712/1‑140 (MQ=255) gCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCaaa > 2:10215316/1‑140 (MQ=255) cTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAGATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCa > 2:10076101/1‑113 (MQ=16) cTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAGATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCa < 1:10076102/113‑1 (MQ=16) cTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAac > 1:4497657/1‑140 (MQ=255) cTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAac > 2:1255744/1‑140 (MQ=255) cTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAac > 1:353758/1‑140 (MQ=255) ttCCAGGCATTGACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGACTTTCCCCGCT‑‑TATTCGCACCTTCCCTCAATCAGGTCATACGCTTCGTGATACTGAACGCCAAACAccc > 2:7172245/1‑139 (MQ=17) ttCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACCa > 2:7466871/1‑140 (MQ=255) ttCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACCa > 2:5212810/1‑140 (MQ=255) ttCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACCa > 2:10910506/1‑140 (MQ=255) ggCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACCAGCGaa > 1:10175465/1‑140 (MQ=255) tttACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACCAGCGAAATGa < 2:7700059/140‑1 (MQ=255) ttACGGGAGAAAAAATCGGCTCAAACATGAAGATATGAACTGACTGAGTCAGCCGAGAAGAATGTCCCCGCT‑‑TATTCGCACCTTCCCTAACTCAGGTCATACGCTTCGAGATACTGAACGCCAAACACCAGCGAAATGAg < 2:5657429/140‑1 (MQ=18) ttACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATGTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACCAGCGAAATGAg < 1:9786775/140‑1 (MQ=255) ttACGGGAGAAAAAATCGGCACAAACATGAACAAATGAACTGACTGAGTCAGCCGAGAAGAATGTCCCCGCT‑‑TATTCGCACCTTCACTAAATAATGACATACGCTTCGAGATACTTAACGCCAAACACCAGCGAAATGAg < 2:5437788/140‑1 (MQ=18) tACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACCAGCGAAATGAGc > 1:10422509/1‑140 (MQ=255) ggAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCgag < 1:479532/105‑1 (MQ=255) ggAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCgag > 2:479532/1‑105 (MQ=255) gaAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACCAGCGAAATGAGCGGCTTGc < 1:7647484/140‑1 (MQ=255) aaaaaTCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATGTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACCAGCGAAATGAGCGGCTTGCcg < 1:714090/140‑1 (MQ=255) aaaaaTCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATGTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACCAGCGAAATGAGCGGCTTGCcg < 1:2231819/140‑1 (MQ=255) aTCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACCAGCGAAATGAGCGGCTTGCcgacga > 1:6478132/1‑140 (MQ=255) cTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACCAGCGAAATGAGCGGCTTGCCGACGATCAac > 1:8230731/1‑140 (MQ=255) aaCATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACCAGCGAAATGAGCGGCTTGCCGACGATCAACACcg < 1:6920674/140‑1 (MQ=255) tGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACCAGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAg < 2:2225410/140‑1 (MQ=255) aagaaTTGAAATGACTAAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACCAGCGAAATGAGCGGCTTGCCGACGATCAACGCCGCGAgcg > 1:9475994/1‑140 (MQ=255) aagaaATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACCAGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAgcg > 1:774597/1‑140 (MQ=255) aagaaATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACCAGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAgcg > 2:8282033/1‑140 (MQ=255) agaaATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACCAGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAgcgc < 1:1632808/140‑1 (MQ=255) aatgaaatgaCTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACCAGCGATATGAGCGGCTTGCCGACGATCAACACCGCGAGCGccac < 2:10358311/140‑1 (MQ=255) aatgaaatgaCTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACCAGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGccac < 1:11351474/140‑1 (MQ=255) atgaaatgaCTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACCAGCGAAATGAGCGGCTTGCcg > 2:1533846/1‑116 (MQ=255) atgaaatgaCTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACCAGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGccacc > 2:9143767/1‑140 (MQ=255) atgaaatgaCTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACCAGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGccacc > 2:3904287/1‑140 (MQ=255) atgaCTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACCAGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGCCACCAGAAt < 1:9622389/140‑1 (MQ=255) aCTGAGTCAGCCGAGACGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATCCTTAACGCCAAACACCAGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGCCACCAGAATAcc > 2:2979962/1‑140 (MQ=255) aGTCAGCCGTGTAGAATTTCCCCGCT‑‑TCTTCGCACCTTCCCTAAATCAGGTCATTCGCTTCGAGATACTTATCGCCACACACCAGCGAAGTGAGCGGCTTGCCGACGATGAACACCGCGAGCGCGAGCAGAATACCGAtt > 2:6023967/1‑140 (MQ=255) gTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACCAGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGCCACCAGAATACCGATTc > 1:1893312/1‑140 (MQ=255) cAGCCGAGAAGAATGTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACCAGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGCCACCAGAATACCGATTccg < 1:9322475/140‑1 (MQ=255) ccGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACCAGCGAAATGAGCGGCTTGCCGACGAGCAACACCGCGAGCGCCACCAGAATACCGATTccgccc > 2:6401576/1‑140 (MQ=255) gaagaaTTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACCAGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGCCACCAGAATACCGATTCCGCCCGCCa < 1:11095125/140‑1 (MQ=255) gaagaaTTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACCAGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGCCACCAGAATACCGATTCCGCCCGCCa > 1:6180552/1‑140 (MQ=255) gaagaaTTTCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACCAGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGCCACCAGAATACCGATTCCGCCCGCCa < 2:5880358/140‑1 (MQ=255) tttCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACCTAACGCCAAACACCAGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGCCACCAGAATACCGATTCCGCCCGCCAGTAAAc > 2:2445640/1‑140 (MQ=255) tCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTCACGCCAACCACCAGCGAAATGAGCGGCGTGCCGACGATCACCACCGCGAGCGCCACCAGAATACCGATTCCGCCCGCCAGTAAACCg < 1:2652434/140‑1 (MQ=255) tCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACCAGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGCCACCAGAATACCGATTCCGCCCGCCAGTAAACCg < 1:4082339/140‑1 (MQ=255) tCCCCGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACCAGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGCCACCAGAATACCGATTCCGCCCGCCAGTAAACCg < 1:10544200/140‑1 (MQ=255) ccccGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACCAGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGCCACCAGAATACCGATTCCGCCCGCCAGTAAACCgg > 1:1782641/1‑140 (MQ=255) cccGCT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACCAGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGCCACCAGAATACCGATTCCGCCCGCCAGTAAACCGGa < 1:2960572/140‑1 (MQ=255) cT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACCAGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGCCACCAGAATACCGATTCCGCCCGCCAGTAAACCGGACTTc > 2:6181433/1‑140 (MQ=255) cT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACCAGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGCCACCAGAATACCGATTCCGCCCGCCAGTAAACCGGACTTc > 1:8954134/1‑140 (MQ=255) cT‑‑TATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACCAGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGCCACCAGAATACCGATTCCGCCCGCCAGTAAACCGGACTTc > 2:8720929/1‑140 (MQ=255) t‑‑tATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACCAGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGCCACCAGAATACCGATTCCGCCCGCCAGTAAACCGGACTTca < 1:8474698/140‑1 (MQ=255) aTTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACCAGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGCCACCAGAATACCGATTCCGCCCGCCAGTAAACCGGACTTcaca < 1:8714976/140‑1 (MQ=255) cttccctAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACCAGCGAAATGAGCGGATTGCCGACGATCAACACCGCGAGCGCCACCAGAATACCGATTCCGCCCGCCACTAAACCGGACTTCACACCTaacaa > 2:10456424/1‑140 (MQ=255) ttccctAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACCAGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGCCACCAGAATACCGATTCCGCCCGCCAGTAAACCGGACTTCACACCTaacaac < 1:9700941/140‑1 (MQ=255) tccctAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACCAGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGCCACCAGAATACCGATTCCGCCCGCCAGTAAACCGGACTTCACACCTAACAAcc > 1:5638326/1‑140 (MQ=255) tccctAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACCAGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGCCACCAGAATACCGATTCCGCCCGCCAGTAAACCGGACTTCACACCTAACAAcc > 1:5972684/1‑140 (MQ=255) tccctAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACCAGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGCCACCAGAATACCGATTCCGCCCGCCAGTAAACCGGACTTCACACCTAACAAcc > 1:4713760/1‑140 (MQ=255) tccctAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACCAGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGACACCAGCATACCGATTCCGCCCGCCAGTAAACCGGACTTCACACCTAACAAcc > 2:8535427/1‑140 (MQ=255) | GGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCT‑‑TATTCGCACCTTCCTTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACCAGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGCCACCAGAATACCGATTCCGCCCGCCAGTAAACCGGACTTCACACCTAACAACC > NZ_CP025268/3133507‑3133782 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |