BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP025268	3,584,141	A→G	139 (TAA→TAG)	CXP41_RS18760 →	YrhA family protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	3,584,141	0	A	G	99.6%	921.7 / NA	275	139 (TAA→TAG)	CXP41_RS18760	YrhA family protein
Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (221/53); minor base T (1/0); total (222/53)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 276 total aligned reads displayed.

TTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAATGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGA  >  NZ_CP025268/3584005‑3584247

    cGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTatga                                                                                                      <  2:1382877/140‑1 (MQ=255)

      tAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTatgatg                                                                                                    >  1:9584588/1‑140 (MQ=255)

       aaaTTAATTTTATAGAAATAATTATGATTTCATAAACCATGATCTACAAGAACGTTTAGTGATCGGGGATTATAGCATTTAAATATTTACTTATGACATTAAAGGTGATGATGCCAACTTACTTATTTAGTGTATGATgg                                                                                                   <  2:2702978/140‑1 (MQ=255)

             aTTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGtttt                                                                                            >  1:944712/1‑140 (MQ=255)

               tttATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTg                                                                                          <  1:10350783/140‑1 (MQ=255)

                  ataGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAgg                                                                                       <  2:5920802/140‑1 (MQ=255)

                        ataatGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTcc                                                                                 >  2:2510045/1‑140 (MQ=255)

                        ataatGATGATTTAATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTcc                                                                                 >  2:5302226/1‑140 (MQ=255)

                            tgatgaTTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTg                                                                             <  2:4285612/140‑1 (MQ=255)

                            tgatgaTTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTg                                                                             >  1:1351252/1‑140 (MQ=255)

                                 atTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTc                                                                        >  2:3708887/1‑140 (MQ=255)

                                   ttCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTg                                                                      >  1:7548433/1‑140 (MQ=255)

                                       tAAACCCTGATCTACAAGAACGGTTAGTGATCGGTGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTc                                                                  <  1:5129837/140‑1 (MQ=255)

                                        aaaCCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCt                                                                 >  1:3110695/1‑140 (MQ=255)

                                         aaCCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTa                                                                <  1:1639204/140‑1 (MQ=255)

                                              tGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGc                                                           >  1:9720991/1‑140 (MQ=255)

                                              tGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGc                                                           <  1:2598073/140‑1 (MQ=255)

                                              tGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGc                                                           <  2:4590126/140‑1 (MQ=255)

                                                aTCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTg                                                                      <  1:8314708/127‑1 (MQ=255)

                                                aTCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTg                                                         >  1:213782/1‑140 (MQ=255)

                                                aTCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTg                                                         >  1:3779844/1‑140 (MQ=255)

                                                aTCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTACTCCAGTGGCTTCTGTTTCTATCAGCTg                                                         >  1:6074926/1‑140 (MQ=255)

                                                aTCTACAAGAACGGTTAGTGATCGGGGATTATAGCATGTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTGAGTGTATGGTTG‑TGTTGTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTg                                                         >  1:10068328/1‑140 (MQ=25)

                                                 tCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGt                                                        <  2:213896/140‑1 (MQ=255)

                                                     cAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCcct                                                    >  1:8277078/1‑140 (MQ=255)

                                                     cAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACAGTAAAGGTGATGCTGCCAACGTACTGATTTAGTGTAGGTAGG‑TGTTTTTGAGGTGCTCCAGTGGCTGCTGTTTCTATCAGCTGTCcct                                                    >  2:7425699/1‑140 (MQ=21)

                                                      aaGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCcctc                                                   >  1:9154512/1‑140 (MQ=255)

                                                      aaGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCcctc                                                   <  2:5010828/140‑1 (MQ=255)

                                                      aaGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGATCCAGTGGCTTCTGTTTCTATCAGCTGTCcctc                                                   >  2:7692065/1‑140 (MQ=255)

                                                        gAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTCGTGTATGATGG‑AGTTTTTGAGGTGCTCCAGTGGCTTCTGTGTCTCTCAGCTGTCcctcct                                                 >  2:9029171/1‑140 (MQ=21)

                                                          aCGGTTAGTGATCGGGGCTTATAGCATGTCATTATTGACTTATGACCTTAAAGGTGATGCTGCCCACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCTGTGGGTTCTGTTTGTATCAGGTGTCcctggtgt                                               >  2:11085194/1‑135 (MQ=18)

                                                          aCGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGt                                               >  1:4586311/1‑140 (MQ=255)

                                                          aCGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGt                                               >  2:7799708/1‑140 (MQ=255)

                                                          aCGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGt                                               >  2:1482434/1‑140 (MQ=255)

                                                          aCGGTTAGTGATCGGGGATTATAGCATTTCAAAATTTACTTATGACATTAAAGGTGATGATGCCAACTTACTGATTTAGAGTATGATGG‑TGATTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGt                                               >  2:8096090/1‑140 (MQ=21)

                                                           cGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGTTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCACTCCTGtt                                              >  2:1794587/1‑140 (MQ=255)

                                                           cGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGtt                                              >  1:5190174/1‑140 (MQ=255)

                                                            ggTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTc                                             >  2:1592541/1‑140 (MQ=255)

                                                             gtaaGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTAAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCa                                            >  1:4892397/4‑140 (MQ=255)

                                                             gTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTg                                                                      >  2:656642/1‑114 (MQ=255)

                                                             gTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTg                                                                      <  1:656642/114‑1 (MQ=255)

                                                             gTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCa                                            >  1:5817224/1‑140 (MQ=255)

                                                             gTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCa                                            >  1:4748190/1‑140 (MQ=255)

                                                             gTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCa                                            >  1:3258484/1‑140 (MQ=255)

                                                             gTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCa                                            >  2:3204232/1‑140 (MQ=255)

                                                             gTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCa                                            >  1:6269721/1‑140 (MQ=255)

                                                             gTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCa                                            >  1:3862401/1‑140 (MQ=255)

                                                               tAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCt                                                          <  2:5743462/124‑1 (MQ=255)

                                                               tAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGc                                          <  1:9656641/140‑1 (MQ=255)

                                                                aGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGt                                                                              >  2:10395108/1‑103 (MQ=255)

                                                                aGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGt                                                                              <  1:10395109/103‑1 (MQ=255)

                                                                aGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTg                                                                      >  2:8560485/1‑111 (MQ=255)

                                                                aGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCt                                         <  1:8021131/140‑1 (MQ=255)

                                                                  tGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTAc                                       <  2:7937663/140‑1 (MQ=255)

                                                                    aTCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTg                                     >  1:4372869/1‑140 (MQ=255)

                                                                      cGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGAc                                   >  2:10652400/1‑140 (MQ=255)

                                                                      cGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGAc                                   >  2:9589849/1‑140 (MQ=255)

                                                                      cGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGAc                                   >  1:5735211/1‑140 (MQ=255)

                                                                       ggggATTGTCGCGTTTCAATATTTACTTAGGACATTGAAGGTGATGCTGCCAACTTACTGAGTTGGGGGATGCTGG‑TGGTTGTGTGGTGCTCCAGTGGCTTCTGTTTCTAGCAGCTGTCGCTGCTGGTCAGGTCGTGACg                                  >  2:200215/1‑140 (MQ=9)

                                                                        gggATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACgg                                 >  1:9887211/1‑140 (MQ=255)

                                                                        gggATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACgg                                 >  1:3580809/1‑140 (MQ=255)

                                                                        gggATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACgg                                 >  1:2416757/1‑140 (MQ=255)

                                                                        gggATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACgg                                 >  2:6867042/1‑140 (MQ=255)

                                                                        gggATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACgg                                 >  1:5534610/1‑140 (MQ=255)

                                                                        gggATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACgg                                 >  2:7272566/1‑140 (MQ=255)

                                                                        gggATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACgg                                 >  1:8656273/1‑140 (MQ=255)

                                                                        gggATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACgg                                 >  1:11175266/1‑140 (MQ=255)

                                                                          gATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACgggg                               <  1:5923311/140‑1 (MQ=255)

                                                                            ttATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGggtg                             >  1:11459073/1‑140 (MQ=255)

                                                                            ttATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGggtg                             >  1:6405078/1‑140 (MQ=255)

                                                                            ttATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGggtg                             >  2:3493239/1‑140 (MQ=255)

                                                                            ttATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGggtg                             >  1:3725661/1‑140 (MQ=255)

                                                                              ataGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGggtggt                           >  1:3021050/1‑140 (MQ=255)

                                                                               taGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGgtggtg                          >  1:8519079/1‑140 (MQ=255)

                                                                               taGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGgtggtg                          >  2:3558436/1‑140 (MQ=255)

                                                                               taGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGgtggtg                          >  1:11077793/1‑140 (MQ=255)

                                                                                aGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGc                         >  1:1729220/1‑140 (MQ=255)

                                                                                aGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTATATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGc                         >  2:5353729/1‑140 (MQ=255)

                                                                                   aTTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCGTCCTGTTCAGCTACTGACGGGGTGGTGCGTa                      >  1:8199078/1‑140 (MQ=255)

                                                                                   aTTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTa                      >  2:10308444/1‑140 (MQ=255)

                                                                                   aTTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTa                      >  2:4001291/1‑140 (MQ=255)

                                                                                   aTTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTa                      >  2:3845335/1‑140 (MQ=255)

                                                                                    tttCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCtt                                                                         <  1:7683162/88‑1 (MQ=255)

                                                                                    tttCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTaa                     >  1:1843284/1‑140 (MQ=255)

                                                                                    tttCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTaa                     >  2:2972798/1‑140 (MQ=255)

                                                                                    tttCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTaa                     >  1:2172303/1‑140 (MQ=255)

                                                                                    tttCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTaa                     >  2:5658757/1‑140 (MQ=255)

                                                                                    tttCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACGTACTGATTTATTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTCTCAGCTGTCCCTCCTGTTCAGCTACTGTCGGGGTGGTGCGTaa                     >  2:6399112/1‑140 (MQ=255)

                                                                                     ttCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAAc                    >  1:2313371/1‑140 (MQ=255)

                                                                                     ttCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAAc                    >  2:8413138/1‑140 (MQ=255)

                                                                                       cAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACgg                  >  1:878902/1‑140 (MQ=255)

                                                                                          tatTTACTTATGACATTAAAGGTGATGCGGCCACCTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCaa               <  1:6980285/140‑1 (MQ=255)

                                                                                          tatTTACTAATGACATAAAAGGTGATCAAGACAACATACTGAATTAGTGTATGATGGATGTTTTT‑AGGTGCTCCATTGGATTCTTTTTATATCAGCACACCCTACTGTTCAGCTACTGACGGGGTGTTGCGAATCGTCaa               >  2:8641532/1‑140 (MQ=2)

                                                                                            tttACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCaaaa             >  1:106690/1‑140 (MQ=255)

                                                                                               aCTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCa          >  1:4057832/1‑140 (MQ=255)

                                                                                               aCTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCa          >  2:9364336/1‑140 (MQ=255)

                                                                                                   aTGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCAccgc      >  1:194395/1‑140 (MQ=25)

                                                                                                    tGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCAccgcc     >  1:9006553/1‑140 (MQ=21)

                                                                                                      aCATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCgg   >  1:4620691/1‑140 (MQ=18)

                                                                                                       cATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGa  >  1:10985985/1‑140 (MQ=17)

TTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAATGTATGATGG‑TGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGA  >  NZ_CP025268/3584005‑3584247

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`