| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 3,864,419 | T→C | pseudogene (1103/1613 nt) | CXP41_RS20140 ← | PTS sugar transporter subunit IIB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 3,864,419 | 0 | T | C | 99.7% | 2176.0 / NA | 626 | pseudogene (1103/1613 nt) | CXP41_RS20140 | PTS sugar transporter subunit IIB |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (323/301); minor base A (1/1); total (324/302) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 626 total aligned reads displayed.
GTGCACATGTTGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACTTAGTCAATCAGACCTCCG‑CCATGTTCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTA > NZ_CP025268/3864282‑3864553 | tGCACATGTTGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAg < 2:2723521/140‑1 (MQ=255) tGCACATGTTGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAg < 1:10961527/140‑1 (MQ=255) ctGTTGAACTGCAGACTCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAAt < 1:7492363/139‑1 (MQ=255) aTGTTGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAAt < 1:3147717/140‑1 (MQ=255) aTGTTGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAAt < 2:11238788/140‑1 (MQ=255) cTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTc > 1:6511208/1‑140 (MQ=255) gCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCg > 1:7100036/1‑140 (MQ=255) gCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCg > 2:2315272/1‑140 (MQ=255) cAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCG‑c > 2:5834769/1‑140 (MQ=255) cAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCG‑c < 2:3575747/140‑1 (MQ=255) cAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCG‑c < 1:3610707/140‑1 (MQ=255) aGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCG‑cc > 1:5883956/1‑140 (MQ=255) gcaTCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCG‑ccc < 2:7636398/138‑2 (MQ=255) gAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCG‑ccc < 1:4089145/140‑2 (MQ=255) aaTCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCG‑ccca < 2:3971712/140‑3 (MQ=255) aaTCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCG‑ccca < 1:10347848/140‑3 (MQ=255) aGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGtt < 2:11363865/140‑1 (MQ=255) gCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgccca < 1:663515‑M1/140‑6 (MQ=255) gCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgccca < 1:3444393‑M1/140‑6 (MQ=255) aaaaCCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccac < 2:4929567‑M1/140‑10 (MQ=255) aaaCCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccaca < 1:9858064‑M1/140‑11 (MQ=255) acccacGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacac < 2:2100669‑M1/138‑12 (MQ=255) aCCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacacc > 1:10011529‑M1/1‑128 (MQ=255) aCCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacacc > 1:3805383‑M1/1‑128 (MQ=255) aCCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacacc > 1:5265540‑M1/1‑128 (MQ=255) ccACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacacca < 1:2599889‑M1/140‑14 (MQ=255) ccACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacacca < 1:2315272‑M1/140‑14 (MQ=255) aCGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaa < 1:2673017‑M1/140‑16 (MQ=255) cGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaag < 2:10553182‑M1/140‑17 (MQ=255) aaGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagag < 1:11163833‑M1/140‑19 (MQ=255) aaGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagag < 1:8220779‑M1/140‑19 (MQ=255) aGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagaga > 2:4366395‑M1/1‑121 (MQ=255) cagcagGGTAAAGCACAACCCACTGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTAGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagataca < 2:853696‑M1/140‑24 (MQ=255) cagcagGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagataca > 2:6231000‑M1/1‑117 (MQ=255) gcagGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacatt < 1:4712050‑M1/140‑26 (MQ=255) ggTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacgg > 1:2936122‑M1/1‑111 (MQ=255) ggTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacgg > 1:9668043‑M1/1‑111 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtc > 2:2526017‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtc > 1:9395177‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtc > 2:9737087‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtc > 1:4810636‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtc > 1:1592222‑M1/1‑109 (MQ=255) cacaACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacat > 1:9920883‑M1/1‑104 (MQ=255) cacaACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacat > 2:366205‑M1/1‑104 (MQ=255) aaCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCACTCAGACCTCCGCCCATGTTgcccaccacacgacagagatacattacggtcgacattga > 1:8048075‑M1/1‑101 (MQ=255) aaCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattga > 2:886785‑M1/1‑101 (MQ=255) aCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgag < 1:4530866‑M1/140‑41 (MQ=255) aCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGA‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgag < 2:3047768‑M1/140‑41 (MQ=255) cccAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgagg > 1:8361754‑M1/1‑99 (MQ=255) cccAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgagg > 2:1279208‑M1/1‑99 (MQ=255) cAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggcc < 1:8537642‑M1/140‑44 (MQ=255) aaTGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccg < 1:3300887‑M1/140‑45 (MQ=255) tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaacgagatccattacggtcgacattgaggccgcc > 2:8248061‑M1/1‑94 (MQ=255) tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgcc > 2:1415899‑M1/1‑94 (MQ=255) tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgcc > 1:5629531‑M1/1‑94 (MQ=255) tgaTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 2:594345‑M1/139‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc > 2:10306074‑M1/1‑91 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 2:4226060‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 1:9980949‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 1:1041331‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 1:6866961‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc > 2:9168986‑M1/1‑91 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 1:4340524‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacatcacggtcgacattgaggccgccagc < 1:6204347‑M1/140‑50 (MQ=255) aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcac > 1:10728192‑M1/1‑89 (MQ=255) tttGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacg < 1:7387719‑M1/140‑53 (MQ=255) tGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggc < 1:7612638‑M1/140‑55 (MQ=255) tCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgt < 1:4943523‑M1/140‑59 (MQ=255) aGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtac > 2:1652513‑M1/1‑80 (MQ=255) aGCATCATATCCGCGTGGTTGCTGAACATCGGGATCAAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtac > 2:4618150‑M1/1‑80 (MQ=255) gCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGATTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtacc < 2:6071231‑M1/140‑62 (MQ=255) catcagATCCGCGTGGTTGCGGAACATCGGGAACCATTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccg < 2:7904750‑M1/140‑63 (MQ=255) atatCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaa > 1:1328962‑M1/1‑74 (MQ=255) tatCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaac > 1:2489725‑M1/1‑73 (MQ=255) tatCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaac < 2:7744464‑M1/140‑68 (MQ=255) atCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaac < 2:1913136‑M1/140‑68 (MQ=255) ccGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACATCCGCCCATGTTtcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagc < 2:5337179‑M1/140‑71 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaa > 2:2902948‑M1/1‑68 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaa > 1:899926‑M1/1‑68 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaa < 2:6443573‑M1/140‑73 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaa > 2:6807810‑M1/1‑68 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaa < 2:7213656‑M1/140‑73 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaa > 1:1052313‑M1/1‑68 (MQ=255) cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatcccttacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaac > 2:4850372‑M1/1‑67 (MQ=255) gTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaaaagcaacg < 2:3429443‑M1/140‑75 (MQ=255) gTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtg > 1:6339871‑M1/1‑63 (MQ=255) tGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaa > 1:2051808‑M1/1‑61 (MQ=255) cTGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaat < 1:8744360‑M1/140‑82 (MQ=255) tGAACATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatg < 1:176949‑M1/140‑83 (MQ=255) cATCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaaca < 2:8033112‑M1/140‑87 (MQ=255) tCGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagg > 1:1227432‑M1/1‑52 (MQ=255) cGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgacatgaacagga > 2:9525206‑M1/1‑51 (MQ=255) cGGGATCCAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagga > 2:3847095‑M1/1‑51 (MQ=255) cAGTTTTGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaat > 2:10776327‑M1/1‑44 (MQ=255) gTTTTGCGGT‑AAAACCTAGTCAATCAGTCCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaatt > 2:5545576‑M1/1‑42 (MQ=255) tGCGGT‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccag < 1:5094130‑M1/140‑103 (MQ=255) t‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggtt < 2:10933639‑M1/140‑108 (MQ=255) t‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggtt < 1:7913181‑M1/140‑108 (MQ=255) t‑AAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggtt < 1:10137309‑M1/140‑108 (MQ=255) aaaCCTAGACAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcg > 2:5177791‑M1/1‑31 (MQ=255) | GTGCACATGTTGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGT‑AAAACTTAGTCAATCAGACCTCCG‑CCATGTTCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTA > NZ_CP025268/3864282‑3864553 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |