BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP025268	7,926	Δ1 bp	pseudogene (35/1432 nt)	yaaJ ←	sodium:alanine symporter family protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	7,923	0	A	.	100.0%	1599.4 / NA	331	pseudogene (38/1432 nt)	yaaJ	sodium:alanine symporter family protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (120/211); total (120/211)

Only 100 of 374 total aligned reads displayed.

GTTAAACCGCCTGGCTGTGGATGAATGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCCAAAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGTATATACGCTACGAGGTACTTGATAACTTCTGCG  >  NZ_CP025268/7784‑8059

gTTAAACCGCCTGGCTGTGGATGAATGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCCa                                                                                                                                          >  1:3122727/1‑140 (MQ=255)

   aaaCCGCCTGGCTGTGGATGAATGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCCaaag                                                                                                                                       <  2:4849399/140‑2 (MQ=255)

    aaCCGCCTGGCTGTGGATGAATGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCCaaagg                                                                                                                                      >  2:300408/1‑138 (MQ=255)

     aCCGCCTGGCTGTGGATGAATGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCCaaagga                                                                                                                                     <  1:4111699/140‑4 (MQ=255)

     aCCGCCTGGCTGTGGATGAATGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCCaaagga                                                                                                                                     <  1:5530167/140‑4 (MQ=255)

     aCCGCCTGGCTGTGGATGAATGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCCaaagga                                                                                                                                     >  1:2485088/1‑137 (MQ=255)

      ccGCCTGGCTGTGGATGAATGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCCaacggac                                                                                                                                    <  2:1004209/140‑6 (MQ=255)

       cGCCTGGCTGTGGATGAATGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACg                                                                                                                                  <  2:5925371/140‑1 (MQ=255)

       cGCCTGGCTGTGGATGAATGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACg                                                                                                                                  <  1:588711/140‑1 (MQ=255)

       cGCCTGGCTGTGGATGAATGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACg                                                                                                                                  <  1:2165024/140‑1 (MQ=255)

        gCCTGGCTGTGGATGAATGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGc                                                                                                                                 >  1:4455832/1‑140 (MQ=255)

         ccTGGCTGTGGATGAATGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAACCTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑ACAGGACGCt                                                                                                                                >  2:4140092/1‑140 (MQ=255)

         ccTGGCTGTGGATGAATGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCt                                                                                                                                >  2:3518311/1‑140 (MQ=255)

         ccTGGCTGTGGATGAATGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCt                                                                                                                                >  2:2887755/1‑140 (MQ=255)

          cTGGCTGTGGATGAATGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGACCCAACAACCTGCGCCGACGTGCAGGTCAATCATTACCGAGCCCC‑ACAGGACGCTg                                                                                                                               >  2:2486386/1‑140 (MQ=255)

                gtgGATGAATGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATg                                                                                                                         <  2:947839/140‑1 (MQ=255)

                   gATGAATGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAg                                                                                                                      <  2:619987/140‑1 (MQ=255)

                       aaTGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGgaga                                                                                                                  >  1:3457040/1‑140 (MQ=255)

                        aTGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGaa                                                                                                                 >  1:2524702/1‑140 (MQ=255)

                        aTGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGaa                                                                                                                 >  1:4671141/1‑140 (MQ=255)

                        aTGCTATTTTTAAGACGTTTGCCCAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGAGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGaa                                                                                                                 >  2:5421724/1‑140 (MQ=255)

                         tGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGaaa                                                                                                                >  1:1459774/1‑140 (MQ=255)

                           cTATTGTTAAGACTTTTGCCACCCTGGCGGATGTAGCGACACTGCACAAATCCGGGGCGCAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAATGCATTACCGAGCCCC‑AATGGACGCTGTGAATGTAGGAGaaaca                                                                                                              >  2:5678961/1‑138 (MQ=255)

                              tttttAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACg                                                                                                                                  >  2:2366974/1‑117 (MQ=255)

                                tttAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTg                                                                                                         <  1:6247094/140‑1 (MQ=255)

                                 ttAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTgg                                                                                                        <  2:817589/140‑1 (MQ=255)

                                  ttaGACTTTTGCCAAACTGGCGGATGTAGAGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGgc                                                                                                       <  2:4064296/138‑1 (MQ=255)

                                  tAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGgc                                                                                                       <  1:788509/140‑1 (MQ=255)

                                  tAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGgc                                                                                                       <  1:5353883/140‑1 (MQ=255)

                                  gaaGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGgc                                                                                                       <  2:5203457/139‑1 (MQ=255)

                                      aCTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGgcatgc                                                                                                   >  2:2702023/1‑140 (MQ=255)

                                       cTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGgcatgca                                                                                                  <  1:6088603/140‑1 (MQ=255)

                                        ttttGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTATTGAAGGAGAAAACTTCTGgcatgcat                                                                                                 >  2:1331849/1‑140 (MQ=255)

                                        ttttGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGgcatgcat                                                                                                 >  1:2123294/1‑140 (MQ=255)

                                          ttGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCatat                                                                                               >  1:5235292/1‑140 (MQ=255)

                                          ttGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCatat                                                                                               >  2:1596432/1‑140 (MQ=255)

                                            gCCCAACTGGCGGATGGAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCACCAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAACATCTGGCATGCATATcc                                                                                             <  1:1106267/140‑1 (MQ=255)

                                            gCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATcc                                                                                             <  1:154704/140‑1 (MQ=255)

                                            gCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATcc                                                                                             <  1:2729859/140‑1 (MQ=255)

                                                 aCTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCtt                                                                                        >  1:4713429/1‑140 (MQ=255)

                                                 aCTGGCGGATGTAACGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCtt                                                                                        >  1:5652198/1‑140 (MQ=255)

                                                     gCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATGACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTg                                                                                    <  1:2600639/140‑1 (MQ=255)

                                                        gATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCg                                                                                 <  2:1162323/140‑1 (MQ=255)

                                                          tGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCCaaagga                                                                                                                                     <  2:6331502/87‑4 (MQ=255)

                                                                  aaCTGCACACATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGa                                                                       <  2:1442603/140‑1 (MQ=255)

                                                                    cTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGAGGACt                                                                     >  2:1909880/1‑140 (MQ=255)

                                                                       cacaAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTc                                                                  <  2:3443546/140‑1 (MQ=255)

                                                                       cacaAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTc                                                                  <  2:219950/140‑1 (MQ=255)

                                                                       cacaAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTc                                                                  <  1:3614048/140‑1 (MQ=255)

                                                                       cacaAATCCGGAGCGACCAGTGAACCAACACCCTGAGCCGAATACCAGGTAAATCAATACCGATCCCC‑AAACGACGCTGTTAATGAAGGAGACAAAATCTGGCATTCTTATCCCTCTTATTGCCGGTCGCGATGACTTTc                                                                  <  2:4405185/140‑1 (MQ=255)

                                                                            agccGGTGCGACACGTGAACCCACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGCTCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCAGGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCtgtg                                                             <  2:5797757/138‑1 (MQ=255)

                                                                            aTCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCtgtg                                                             >  1:3258560/1‑140 (MQ=255)

                                                                                 gTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATCTCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAAc                                                        >  1:2959274/1‑140 (MQ=255)

                                                                                 gTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTCAAc                                                        >  2:3269321/1‑140 (MQ=255)

                                                                                 gTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAAc                                                        >  2:4548153/1‑140 (MQ=255)

                                                                                 gTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAAc                                                        >  1:1007554/1‑140 (MQ=255)

                                                                                        aaGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCa                                                 <  1:3206132/140‑1 (MQ=255)

                                                                                         aGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCaa                                                <  1:1143210/140‑1 (MQ=255)

                                                                                          gTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAAt                                               <  1:6321110/140‑1 (MQ=255)

                                                                                          gTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCAGTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAAt                                               <  1:1200948/140‑1 (MQ=255)

                                                                                            gAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTg                                             >  1:1245464/1‑140 (MQ=255)

                                                                                             aaCCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGt                                            <  1:3921102/140‑1 (MQ=255)

                                                                                               ccAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGttt                                          <  1:5069802/140‑1 (MQ=255)

                                                                                                 aacaacCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGAATTTCCTGTGTAAACGTTACCAATTGTTTaa                                        <  2:3291290/140‑1 (MQ=255)

                                                                                                  acaacCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTaag                                       <  2:497690/140‑1 (MQ=255)

                                                                                                  acaacCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTaag                                       <  1:3985911/140‑1 (MQ=255)

                                                                                                  acaacCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTaag                                       <  2:4596044/140‑1 (MQ=255)

                                                                                                  acaacCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTaag                                       <  1:3408493/140‑1 (MQ=255)

                                                                                                   cacccTGCGCCGAAGAGCAGGTAACTCAGTACCGATCCCC‑AAAGGACGCTGTTACTGAAGGAGAAAAAATCTGGCATGCATAGCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTaaga                                      <  2:5844569/137‑1 (MQ=255)

                                                                                                   caacCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCa                                                 <  1:4319620/129‑1 (MQ=255)

                                                                                                   caacCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCa                                                 >  2:4319620/1‑129 (MQ=255)

                                                                                                   caacCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTaaga                                      <  1:2019744/140‑1 (MQ=255)

                                                                                                   caacCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTaaga                                      <  2:2396160/140‑1 (MQ=255)

                                                                                                   caacCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTaaga                                      <  1:5189868/140‑1 (MQ=255)

                                                                                                   caacCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTaaga                                      <  2:2030371/140‑1 (MQ=255)

                                                                                                    aacCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGTAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTaagaa                                     <  1:3638500/140‑1 (MQ=255)

                                                                                                    aacCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTaagaa                                     <  1:724284/140‑1 (MQ=255)

                                                                                                    aacCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTaagaa                                     <  1:543340/140‑1 (MQ=255)

                                                                                                     acCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTaagaag                                    >  1:2367416/1‑140 (MQ=255)

                                                                                                       cTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGta                                  <  2:3973153/140‑1 (MQ=255)

                                                                                                        tGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGtat                                 <  2:3708015/140‑1 (MQ=255)

                                                                                                         gcgcCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGtata                                <  2:6419678/140‑1 (MQ=255)

                                                                                                          cgcCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTCATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGtatat                               >  2:5286183/1‑140 (MQ=255)

                                                                                                          cgcCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGtatat                               <  1:6115295/140‑1 (MQ=255)

                                                                                                          cgcCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGACGGTCGAGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGtatat                               <  2:388191/140‑1 (MQ=255)

                                                                                                           gcCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGtatata                              <  1:2315239/140‑1 (MQ=255)

                                                                                                                  agCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGTATATACGCTACg                       <  1:1582299/140‑1 (MQ=255)

                                                                                                                    cAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCAGTGTAAACGTTACCAATTGTTTAAGAAGAATATACGCTACGAg                     >  1:1677673/1‑140 (MQ=255)

                                                                                                                      ggTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGACGTATATACGCTACGAGGt                   >  1:5906727/1‑140 (MQ=255)

                                                                                                                        tAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGTATATACGCTACGAGGTAc                 <  1:4580556/140‑1 (MQ=255)

                                                                                                                            tCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGTATATACGCTACGAGGTACTTGa             >  1:5843065/1‑140 (MQ=255)

                                                                                                                              aTTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGTATATACGCTACGAGGTACTTGATa           >  1:1412314/1‑140 (MQ=255)

                                                                                                                                tACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAAGTGTGTAAGAAGTATATACGCTACGAGGTACTTGATAAc         <  2:1533911/140‑1 (MQ=255)

                                                                                                                                 cccGATCGCC‑AAAGGACGCTGTTAATGTAGTAGAAAAAATCTGGCATGCATTTCGATCTTATTTCCGGTCGCGATGACTTTCGTGTGTAATCGTTACCATTTGTTTAATAAGTATATACTCTACGAGGTAGTTGTTGACt        >  2:5987301/2‑140 (MQ=255)

                                                                                                                                 aCCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGTATATACGCTACGAGGTAc                 <  1:5576716/131‑1 (MQ=255)

                                                                                                                                 aCCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGTATATACGCTACGAGGTACTTGATAACt        >  1:3773607/1‑140 (MQ=255)

                                                                                                                                 aCCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGTATATACGCTACGAGGTACTTGATAACt        >  2:6400137/1‑140 (MQ=255)

                                                                                                                                  ccGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGTATATACGCTACGAGGTACTTGATAACtt       <  2:612801/140‑1 (MQ=255)

                                                                                                                                    gATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGTATATACGCTACGAGGTACTTGATAACTTCt     <  1:2873066/140‑1 (MQ=255)

                                                                                                                                      atccccAAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGTATATACGCTACGAGGTACTTGATAACTTCTg    <  2:5567362/138‑1 (MQ=255)

GTTAAACCGCCTGGCTGTGGATGAATGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCCAAAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGTATATACGCTACGAGGTACTTGATAACTTCTGCG  >  NZ_CP025268/7784‑8059

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`