| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 1,690,360 | (C)5→6 | pseudogene (1047/1403 nt) | fumC ← | class II fumarate hydratase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 1,690,355 | 1 | . | C | 97.2% | 1343.9 / 27.2 | 396 | pseudogene (1052/1403 nt) | fumC | class II fumarate hydratase |
| Reads supporting (aligned to +/- strand): ref base . (5/6); new base C (193/191); total (198/198) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.71e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 424 total aligned reads displayed.
TTCGCTCACGATTCGGTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCG‑C‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTCCGGGATTGAGATTTCAC > NZ_CP025268/1690216‑1690487 | tCGCTCACGATTCGGTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAgcg‑c < 2:4547827/140‑1 (MQ=255) cGCTCACGATTCGGTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCG‑c‑c < 1:3675296/140‑1 (MQ=255) cGCTCACGATTCGGTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCG‑c‑c > 1:3962539/1‑140 (MQ=255) cGCTCACGATTCGGTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCG‑c‑c < 1:3217562/140‑1 (MQ=255) aCGATTCGGTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCG‑c‑cc‑ccca < 2:3651514/140‑3 (MQ=255) gagtCGCTTCAATACCCACTGAGCAGTGTGTGTTAAATCTTTCCATGCCATCTGCCAGCAAGCGAACCGATAGCAGGAAATTGAGGATCACAATTGGACGGAAGACGTTCAGTTCAAAGATACCGGAAGCG‑c‑cc‑cccatg > 2:779549/4‑136 (MQ=255) gATTCGGTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCG‑c‑cc‑cccatg > 1:740150/1‑136 (MQ=255) ttCGGTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGtt < 1:6294760/140‑1 (MQ=255) ggTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGAt > 2:2849494/1‑140 (MQ=255) tCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCAAGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGc < 1:1297300/140‑1 (MQ=255) acgaCCCACTGCGCAGTGATTGTTAAAACTTTCCATGCCCTCTGCCAGCAAGCGCACCGATGGCAGGAAATTGAGGATCACCATTGGACCGACGACCTTCAGTTCAAACTTACCGGAAGCGCC‑CC‑CCATCTTGACCGCCa < 2:1207082/137‑1 (MQ=255) aaTACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCa > 1:3324351/1‑140 (MQ=255) tACCCACTGCGCAGTGTTTTTTAAAACTTTCCAAGCCATCTGCCAGCACGCGCACCGATTGAAGGAAATAGTGGATCACCATTGGACGGACGACGTTCAGATCAAAGTGACCGCAACCG‑C‑CCACCATGTTGATCGCCAcg > 2:3752056/1‑140 (MQ=255) tACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCAcg < 1:1984941/140‑1 (MQ=255) aCCCACTGCGCAGTGTTTGTTAAAACTTTCCAAGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCAcgt < 2:1653720/140‑1 (MQ=255) ccACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCAcgtcg < 1:1726846/140‑1 (MQ=255) aCTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGtt > 2:860116/1‑140 (MQ=255) aCTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGtt > 2:578738/1‑140 (MQ=255) tGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTcc > 2:5325206/1‑140 (MQ=255) gcgcAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCAcgtcg > 2:2764567/1‑135 (MQ=255) gcgcAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTccc > 2:2654033/1‑140 (MQ=255) gcgcAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTccc > 2:2198481/1‑140 (MQ=255) gcgcAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTccc > 1:1643986/1‑140 (MQ=255) gcgcAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTccc > 2:4427223/1‑140 (MQ=255) gcgcAGTGTTTGTAAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTccc < 2:4113040/140‑1 (MQ=255) cgcAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGACATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTcccc > 2:20115/1‑140 (MQ=255) cgcAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTcccc > 1:4452579/1‑140 (MQ=255) cgcAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTcccc > 1:2848024/1‑140 (MQ=255) gcAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCa > 2:5673570/1‑140 (MQ=255) cAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCAt < 1:1051280/140‑1 (MQ=255) cAGTGGTTGGTAAAACTTTCCATGCCATCTGCCAGCCAGCGCGCCGATTGCAGGCAATTGTGGCTCCCCATTGGACGGAAGACGGGCAGTTCAATGTTACCGGAAGCG‑CGCC‑CCAGGTGGAGCGCCACGGCGTGCCCCag > 2:3145981/1‑139 (MQ=255) aGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATc > 1:4300245/1‑140 (MQ=255) gtgtTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCa < 1:1200398/140‑1 (MQ=255) gtgtTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCa > 1:4759451/1‑140 (MQ=255) gtgtTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCa < 1:6446284/140‑1 (MQ=255) gtgtTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCa < 1:6236933/140‑1 (MQ=255) tgtttgttAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCAc > 1:3534983/1‑140 (MQ=255) tttgttAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCt > 2:2401561/1‑140 (MQ=255) tAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCTTTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGAcag < 2:4870666/140‑1 (MQ=255) tAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGAcag < 1:1423675/140‑1 (MQ=255) tAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGAcag < 2:2314518/140‑1 (MQ=255) tAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGAcag < 2:1776170/140‑1 (MQ=255) aaaCTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGAcagca < 1:911283/140‑1 (MQ=255) aaaCTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGAcagca < 1:518149/140‑1 (MQ=255) aaCTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGAcagcag > 1:563991/1‑140 (MQ=255) aaCTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGAcagcag > 2:399591/1‑140 (MQ=255) aaCTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGAcagcag > 1:4833514/1‑140 (MQ=255) aaCTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGAcagcag > 1:6060144/1‑140 (MQ=255) tttCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGc < 1:6333685/140‑1 (MQ=255) ttCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCa < 1:4973682/140‑1 (MQ=255) ttCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCa < 1:1704277/140‑1 (MQ=255) gtCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCa < 2:3366667/139‑1 (MQ=255) aTGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGt < 2:2918690/140‑1 (MQ=255) tGCCCTCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCAGGGtt > 1:227149/1‑140 (MQ=255) gCCCTCTGCCAGCACTCGCACAGATCGCAGGAAATTGAGTATCACCATTGGACGGAAGACGTTCATTTCAAAGTTACCGGACGCGCC‑CC‑CCATGTTGAGCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTa < 2:1424459/140‑1 (MQ=255) gCCATCTGCCAGCAGGCGCAGCGTGTGGATGAATGTGTGGATCACCTTTGGACGGAAGTGGTTCTTTTATTCGTTACCGGATGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTACCCATGACCTGACTGCAGAGGATGGTTa < 2:1576160/140‑1 (MQ=255) gCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTa < 1:1527684/140‑1 (MQ=255) gCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTa < 1:2510502/140‑1 (MQ=255) cATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAAt > 1:3067706/1‑140 (MQ=255) aGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTcaca < 2:4758321/140‑1 (MQ=255) aGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTcaca < 1:204898/140‑1 (MQ=255) aGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTcaca < 1:4575191/140‑1 (MQ=255) aGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTcaca < 1:5974958/140‑1 (MQ=255) aGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTcaca < 2:2045041/140‑1 (MQ=255) aGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTcaca < 2:2144564/140‑1 (MQ=255) aGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTACAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGACGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTcaca < 2:1152330/140‑1 (MQ=255) gCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCacac < 2:5505425/140‑1 (MQ=255) cAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACt > 1:5546715/1‑140 (MQ=255) cAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACt < 2:4829096/140‑1 (MQ=255) cgcACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTgtgt > 1:2816722/1‑140 (MQ=255) cgcACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCG‑C‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGtt > 1:4658212/1‑140 (MQ=255) cACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAATGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTg > 2:5966588/1‑140 (MQ=255) aCCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGATCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTgg > 1:259339/1‑140 (MQ=255) ccGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTggg < 1:4114849/140‑1 (MQ=255) ttGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCa < 1:5873687/140‑1 (MQ=255) ttGCAGGAAAGTGTGGATCACCCTGGCACGGAAGACGAGCAGTTCACAGTTACCGGAAGCGCC‑CC‑CCAAGATGAGCGCCACGTCGTTCCCCAGCACCTGACAGCAGAGCTTGGTTAATGCCACACACTGTGTGGGGTTCa < 2:6120437/140‑1 (MQ=255) gCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCCAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCCTCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACt < 2:3523241/140‑1 (MQ=255) aTTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCg > 1:4049953/1‑140 (MQ=255) tggtgGATCCCCATGGGACGGACGCCGGTCAGTCCAACGTGACCGGCACCGCC‑CC‑CCATGTTGATCGCCACGGCGGTCCCCAACACCTGACAGCAGAGCATGGTTAATGCAGCACACGGTGTTGGGTTCACTTTCCCCgg < 2:660226/138‑1 (MQ=255) gtgGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCa < 2:6352559/140‑1 (MQ=255) gATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGa < 1:1138688/140‑1 (MQ=255) aTCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGAt > 1:3771546/1‑140 (MQ=255) cACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATTCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTg > 2:894786/1‑140 (MQ=255) ttGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTg > 1:1493656/1‑140 (MQ=255) gACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGccc > 2:6313729/1‑140 (MQ=255) gAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGTTTGAGCTGCCCGGCt < 1:2401561/140‑1 (MQ=255) gAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCt < 1:6040544/140‑1 (MQ=255) aaGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTc > 1:6136751/1‑140 (MQ=255) aaGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTc > 1:1874648/1‑140 (MQ=255) ttcagttcaAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTc > 2:4183130/1‑140 (MQ=255) ttcagttcaAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTc > 1:2186321/1‑140 (MQ=255) gttcaAAGTTCCCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTCCggg > 2:5115620/1‑140 (MQ=255) gttcaAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTCCggg > 1:4392384/1‑140 (MQ=255) gttcaAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTCCggg > 1:5051657/1‑140 (MQ=255) gttcaAAGTTACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTCCggg > 1:2342112/1‑140 (MQ=255) ttACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCTTCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTGGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTCCGGGATTGAGAt < 2:4325149/140‑1 (MQ=255) ttACCGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTGTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTCCGGGATTGAGAt < 1:2953432/140‑1 (MQ=255) gtACCGGCAGCGCC‑CC‑CCCTGTTGATCGCCACGTCGGTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGAGTTGGGTTCACTTTCCCCGCCATGAGTGAGCTGCCCGGCTCATATTCCGGGATTGCGAt < 2:1692739/139‑1 (MQ=255) ccGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCCCTTTCCCCGGCATGATTGAGCTGCCCGGCTCATGTTCCGGGAGTGAGATTTc > 1:53221/1‑140 (MQ=255) ccGGAAGCGCC‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTCCGGGATTGAGATTTc > 1:5419841/1‑140 (MQ=255) | TTCGCTCACGATTCGGTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCG‑C‑CC‑CCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTCCGGGATTGAGATTTCAC > NZ_CP025268/1690216‑1690487 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |