| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 1,701,269 | +A | intergenic (‑380/+10) | uidA ← / ← uidR | beta‑glucuronidase/DNA‑binding transcriptional regulator UidR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 1,701,265 | 1 | . | A | 92.7% | 1353.0 / 84.2 | 374 | intergenic (‑376/+14) | uidA/uidR | beta‑glucuronidase/DNA‑binding transcriptional regulator UidR |
| Reads supporting (aligned to +/- strand): ref base . (13/14); new base A (169/175); total (185/189) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 388 total aligned reads displayed.
AGCGTATTGGGAACGATAAACTCTCATGACATATGGCTACAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCG‑A‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTACACCGTAGGTCAGATCCAGCAGTAAA > NZ_CP025268/1701126‑1701399 | gCGTATTGGGAACGATAAACTCTCATGACATATGGCTACAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCG‑a < 1:636028/140‑1 (MQ=255) tATTGGGAACGATAAACTCTCATGACATATGGCTACAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCG‑a‑aa‑a > 2:2564814/1‑140 (MQ=255) aTTGGGAACGATAAACTCTCATGACATATGGCTACAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCG‑a‑aa‑aa > 1:4897699/1‑139 (MQ=255) tGGGAACGATAAACTCTCATGACATATGGCTACAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCG‑a‑aa‑aaga < 1:1030216/140‑4 (MQ=255) aaCGATAAACTCTCATGACATATGGCTACAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCG‑A‑AA‑a‑‑agagaga < 2:925407/140‑1 (MQ=255) aaCGATAAACTCTCATGACATATGGCTACAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCG‑A‑AA‑a‑‑agagaga > 2:3488102/1‑140 (MQ=255) tctcATGACATATGGCTACAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGAt < 1:1644149/140‑1 (MQ=255) tctcATGACATATGGCTACAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGAt < 1:57795/140‑1 (MQ=255) tctcATGACATATGGCTACAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGAt < 1:4460025/140‑1 (MQ=255) tctcATGACATATGGCTACAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGAt < 1:4309380/140‑1 (MQ=255) tcATGACATATGGCTACAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGc < 1:1518868/140‑1 (MQ=255) tcATGACATATGGCTACAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGc < 1:3670060/140‑1 (MQ=255) tcATGACATATGGCTACAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGc < 2:5437025/140‑1 (MQ=255) cATGACATATGGCTACAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCg > 1:5509834/1‑140 (MQ=255) cATGACATATGGCTACAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCg > 1:2757887/1‑140 (MQ=255) aTGACATATGGCTACAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCgg > 1:2333114/1‑140 (MQ=255) aCATATGGCTACAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTa > 1:4533711/1‑140 (MQ=255) tGGCTACAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATa > 1:288582/1‑140 (MQ=255) tGGCTACAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATa > 1:3059832/1‑140 (MQ=255) gCTACAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGTAATTACGAGATGAATCGCGGGCACAGTGAGCCCCAGCCCGCCGTA‑AA‑A‑GTGAGAGAATCCGGATGCGGTGAAGATAcc > 2:1927949/1‑140 (MQ=255) aCAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGcc < 2:2277142/140‑1 (MQ=255) cAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCa > 1:2943110/1‑140 (MQ=255) aGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCac > 2:5028913/1‑139 (MQ=255) aGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCaa > 1:3828627/1‑140 (MQ=255) tGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAatc > 1:4872479/1‑140 (MQ=255) actaggttGGGGGGACTTCTCCGAAGCCGGGACGGATAATTGTTGCACAGAGAAATTCCGCTAGGAAACGCGGGCACAGGTATCACCCGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTCAGATACCGCCAatcat > 2:3241754/7‑140 (MQ=255) aaTATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGACCTTACGATAGGAAACGCGGGCACAGTTATCCCCAGCCCGCCGCA‑AA‑A‑GCGAGAGCAGCAGGAGGCGGTTAAGATACCGCCAatcat > 2:4606384/1‑140 (MQ=255) aaTATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAatcat < 1:3204557/140‑1 (MQ=255) aaTATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAatcat > 2:4050607/1‑140 (MQ=255) tataTTGGGGGCAATACACCGAAGCCGCGACCGAAAATTGAAGCACAGACAAATGACGACATGCCCCGCGGGCACACTTACCACCCGCCCGCCG‑A‑AACA‑CAGAGAGAAACAGCATGCGGTTAAGATACCGCCAACCAAcg < 2:4486331/140‑1 (MQ=255) tatTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATcg < 1:2451632/140‑1 (MQ=255) tatTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTGTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGAAGCGGTTAAGATACCGCCAATCATcg < 2:4742964/140‑1 (MQ=255) tatTTTGGGGGGAATCCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATcg < 2:4288804/140‑1 (MQ=255) tttGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATcgcgc > 1:1256186/1‑140 (MQ=255) ttGGGGGGCATTCTCCGCAGCAGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCCCAGTTATCACCAGCCCGCCG‑ACAA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATcgcgcg > 2:4248637/1‑140 (MQ=255) ttGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATcgcgcg > 2:181371/1‑140 (MQ=255) ggggggAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTa > 1:5417473/1‑140 (MQ=255) ggggAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAAt > 1:6119477/1‑140 (MQ=255) ggggAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAAt > 1:2015266/1‑140 (MQ=255) gAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATccc > 1:1164768/1‑140 (MQ=255) aaTTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCt > 2:2879212/1‑140 (MQ=255) aaTTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCt > 2:2471449/1‑140 (MQ=255) aaTTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCt < 1:4156331/140‑1 (MQ=255) tcCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCa > 2:3595143/1‑140 (MQ=255) aGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTACTCCCTGAGCAAacga > 2:1244784/1‑140 (MQ=255) aGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAacga < 2:3326262/140‑1 (MQ=255) aGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAacga < 2:1621168/140‑1 (MQ=255) gCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAacgac > 1:2879801/1‑140 (MQ=255) ggAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCtt > 1:2221145/1‑140 (MQ=255) ggAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCtt > 2:674222/1‑140 (MQ=255) gAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCG‑A‑AACA‑GAGAGAGAATCAGGCTGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTc < 2:1577789/140‑1 (MQ=255) aaGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCa < 1:5276435/140‑1 (MQ=255) aaGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCa < 2:2615861/140‑1 (MQ=255) aaGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCa > 1:3343241/1‑140 (MQ=255) aaGGATAATGTTTGCACAGAGAAATTACGATATGAACCGCGGGCCCAGGTATCACCAGCCCGCCG‑A‑AA‑ACGAGAGAGAATCAGGCTGCGGTTAAGATACCGCCACTCATCGCGCGAACTCCCTGAGCAAACGACGCGTCa < 2:847684/140‑1 (MQ=255) gactttttGCACAGAGAAAGTACGATATGAAACGCGGGCCCAGGTCTCACCAGCCCGCCG‑A‑AACA‑GAGAGAGACTCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTCATCCCTGAGCAAACGACGCTTCACgcgc > 2:3946121/4‑140 (MQ=255) ttGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTc > 2:1062304/1‑140 (MQ=255) cacaGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTc < 2:6218007/140‑1 (MQ=255) agaAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCtt > 1:137334/1‑140 (MQ=255) ttACGATCTGAAACGCGGGCACAGTTATCCCCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGata < 1:3474621/140‑1 (MQ=255) ttACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGata < 2:1002253/140‑1 (MQ=255) ttACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGata < 1:3918530/140‑1 (MQ=255) ttACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGata < 2:3690073/140‑1 (MQ=255) ttACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGata < 1:6156151/140‑1 (MQ=255) ttACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCGGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGata < 1:4802215/140‑1 (MQ=255) aCGATATGACACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATc < 1:2627735/140‑1 (MQ=255) aCGATATGAACCGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATc < 1:6283192/140‑1 (MQ=255) aCGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATc < 2:2068455/140‑1 (MQ=255) aCGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATc < 2:5862683/140‑1 (MQ=255) ctaggcaaCGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCACTCTTCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGc < 2:612197/134‑1 (MQ=255) atatGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGc > 2:1316365/1‑140 (MQ=255) atatGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGc < 1:4036794/140‑1 (MQ=255) atatGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGc > 1:3548321/1‑140 (MQ=255) atatGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGc < 2:5134608/140‑1 (MQ=255) atatGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGc > 2:5569729/1‑140 (MQ=255) atatGAAACGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCGTCCGCTTCGATATCGGc < 2:3831755/140‑1 (MQ=255) atatGAAACGCGGGCACAGTTATCACCAGCCCGCCG‑A‑AACA‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGc < 2:5298957/140‑1 (MQ=255) aaaCGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTa < 2:6188027/140‑1 (MQ=255) aaaCGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTa < 2:1174461/140‑1 (MQ=255) aaaCGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTa < 1:4772806/140‑1 (MQ=255) aaaCGCGGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCAAATCATCGCGCTTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTa < 1:3960713/140‑1 (MQ=255) gcgGGCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCTCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTACAcc < 2:767134/140‑1 (MQ=255) gggCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTACACCGt < 1:3602859/140‑1 (MQ=255) gggCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTACACCGt < 2:6442155/140‑1 (MQ=255) gggCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTACACCGt < 2:1117374/140‑1 (MQ=255) gggCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTACACCGt > 2:629568/1‑140 (MQ=255) gCACAGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTACACCGTAg > 1:593888/1‑140 (MQ=255) caGTTATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTACACCGTAGGTc < 1:508030/140‑1 (MQ=255) ttATCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTACACCGTAGGTCAGa > 1:730073/1‑140 (MQ=255) tCACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTACACCGTAGGTCAGATcc < 1:2564814/140‑1 (MQ=255) cACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTACACCGTAGGTCAGATCca > 2:2985643/1‑140 (MQ=255) cACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTACACCGTAGGTCAGATCca > 1:1894422/1‑140 (MQ=255) cACCAGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTACACCGTAGGTCAGATCca > 2:2214681/1‑140 (MQ=255) aGCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGAGGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCACACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTACACCGTAGGTCAGATCcagcag > 2:4887541/1‑140 (MQ=255) gCCCGCCGAA‑AA‑A‑GAGAGAGAATCAGGAGGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCGGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTACACCGTAGGTCAGATCCAGCAGt < 1:1021253/140‑1 (MQ=255) cccGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTACACCGTAGGTCAGATCCAGCAGTa > 1:177024/1‑140 (MQ=255) cccGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAATACACCGTAGGTCAGATCCAGCAGTa > 1:5652913/1‑140 (MQ=255) cccGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATAGCGGCCAGTACACCGTAGGTCAGATCCAGCAGTa > 1:1204430/1‑140 (MQ=255) cccGCCGAA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATAGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTACACCGTAGGTCAGATCCAGCAGTa > 2:3420157/1‑140 (MQ=255) cgccgaA‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTACACCGTAGGTCAGATCCAGCAGTaaa > 1:6421878/1‑140 (MQ=255) | AGCGTATTGGGAACGATAAACTCTCATGACATATGGCTACAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCG‑A‑AA‑A‑GAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTACACCGTAGGTCAGATCCAGCAGTAAA > NZ_CP025268/1701126‑1701399 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |