| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 1,826,683 | (A)7→8 | intergenic (‑247/+51) | chbB ← / ← osmE | PTS N,N'‑diacetylchitobiose transporter subunit IIB/osmotically‑inducible lipoprotein OsmE |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 1,826,676 | 1 | . | A | 94.9% | 1445.6 / 57.3 | 391 | intergenic (‑240/+58) | chbB/osmE | PTS N,N'‑diacetylchitobiose transporter subunit IIB/osmotically‑inducible lipoprotein OsmE |
| Reads supporting (aligned to +/- strand): ref base . (18/2); new base A (275/96); total (293/98) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.82e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 398 total aligned reads displayed.
TGGCTGAAAGGAGTATACGGTATAGACCTGAGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CC‑‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTATTCAGCACAGGTCTGATAACCGGAGTTGATGACATGTCCGGTATCAT > NZ_CP025268/1826539‑1826810 | aaaGGAGTATACGGTATAGACCTGAGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATTATTCGCGAAGATAATTAAGAACTCA‑GG‑CC‑‑a‑aaaa‑aaa > 1:120020/1‑139 (MQ=255) aCGGTATAGACCTGAGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGAGAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAAt > 2:5972789/1‑140 (MQ=255) tataGACCTGAGCAATAGTCTTTCTTTGACCTTATAAATTGTTGCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCT‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGcc > 2:4963097/1‑140 (MQ=255) tataGACCTGAGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGcc > 2:5560922/1‑140 (MQ=255) tataGACCTGAGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGcc > 1:1936612/1‑140 (MQ=255) tataGACCTGAGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGcc > 2:517351/1‑140 (MQ=255) tataGACCTGAGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGcc > 2:1664368/1‑140 (MQ=255) tataGACCTGAGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGcc > 1:870068/1‑140 (MQ=255) ataGACCTGAGCAATAGGATTTCTTTGACCTTATAAAGTGTGACTCCTTGACCTGTGGATATGACCCGGTGCACATTTCGGGCAAATACTTCGCGAAGATAATGATGAACTCG‑GG‑CC‑‑ACACAA‑AA‑CCGGCGCGATGGCCg > 2:6448278/1‑140 (MQ=255) aGACCTGAGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGt > 2:707079/1‑140 (MQ=255) aGACCTGAGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGt > 1:3359269/1‑140 (MQ=255) aGACCTGAGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCGGTGGTTATGACCCTCTTCACATTTCGGGCAATTAATTCGCGAAGATAATTAAGAACTCA‑GG‑CC‑‑A‑ATAT‑AA‑CCGGCGCAAGGGCCGGtt > 1:928446/1‑140 (MQ=255) aCCTGAGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGttt > 1:1470860/1‑140 (MQ=255) aCCTGAGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGttt > 2:2733588/1‑140 (MQ=255) aCCTGAGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGttt > 2:2557155/1‑140 (MQ=255) aGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTCTGACCCTCTGCACATTTCGGGCAAATAATTCGCGAAGTTCATTCAGAACTCA‑GGCCC‑‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTGCCggt > 2:4107622/1‑138 (MQ=255) aGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATTACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCgtt > 1:964519/1‑140 (MQ=255) aGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAATTAATTCGCGAAGATCATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCgtt > 1:377536/1‑140 (MQ=255) aGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCACTGGCCGGTTTCCgtt > 2:1364714/1‑140 (MQ=255) aGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCACTGGCCGGTTTCAgtt > 2:5515987/1‑140 (MQ=255) aGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCgtt > 2:2653132/1‑140 (MQ=255) aGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCgtt > 1:6045729/1‑140 (MQ=255) aGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCgtt > 1:5318913/1‑140 (MQ=255) aGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCgtt > 1:3275858/1‑140 (MQ=255) aGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCgtt > 2:4189083/1‑140 (MQ=255) aGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCgtt > 1:2954147/1‑140 (MQ=255) aGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCgtt > 1:4851252/1‑140 (MQ=255) aGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCgtt > 1:1827390/1‑140 (MQ=255) aGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCgtt > 2:2081824/1‑140 (MQ=255) aGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCgtt > 2:572100/1‑140 (MQ=255) aGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCgtt > 2:3345564/1‑140 (MQ=255) aGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCgtt > 1:1697388/1‑140 (MQ=255) aGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCgtt > 2:2455803/1‑140 (MQ=255) aGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCAAATTTCGGGCAAATACTTCGCGAAGATAATAAAGAACTCA‑GG‑CC‑‑A‑AAAATAA‑CCGGCGCAAAGGCCGGTTTCAgtt > 1:3147815/1‑140 (MQ=255) aGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGAGGTTATGACCCACTACACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCgtg > 2:2523477/1‑139 (MQ=255) aGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCAAGACCTGTGGTTATGACCATCTTCACATTTCGGGCAAAAAATTCGCGAAGAAAATAAAGAACTCA‑GT‑CCA‑A‑AAAA‑AA‑CCGCCGCAATTGCCGGTTTACgtt > 1:5987058/1‑140 (MQ=255) aGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCATTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATACATAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGATTCCgat > 2:4537675/1‑138 (MQ=255) aGCAAGAGTATTTCTTTGACCTTATAAATTGGTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCCAATAATTCGCGACGAGAATTAAGAACTCA‑GG‑CC‑‑A‑AAAATTA‑CCGGCGCAATGGCCGGTTTCCgtt > 2:4676111/1‑140 (MQ=255) tAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTAc > 1:577901/1‑140 (MQ=255) tAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTAc > 1:5564466/1‑140 (MQ=255) tttCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAg > 1:2311271/1‑140 (MQ=255) tttCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAg > 1:5070681/1‑140 (MQ=255) tttCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGAGAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAg > 2:3854524/1‑140 (MQ=255) tCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCTGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCt > 2:1618528/1‑140 (MQ=255) ttGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTc > 1:4409241/1‑140 (MQ=255) ttGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTc > 1:5163001/1‑140 (MQ=255) ttGACCTTATAAATTGTTACTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTc > 2:1547531/1‑140 (MQ=255) tGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCa > 1:4677700/1‑140 (MQ=255) aCCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGa > 1:5259395/1‑140 (MQ=255) aCCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGa > 1:4936242/1‑140 (MQ=255) aCCTTATAAATTGTTTCTCCTTGACATTTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGG‑CA‑‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGGTGTTACTCAAGCTTTCAGa > 2:3941598/1‑140 (MQ=255) tataAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATACTTAAGAACTCA‑GGCCC‑‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGGTGTTACTCAAGCTGTCAGAGGac > 2:6026725/1‑139 (MQ=255) ataAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTACTCa > 2:3489746/1‑125 (MQ=255) ataAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTACTCa < 1:3489746/125‑1 (MQ=255) ataAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAAt > 1:617335/1‑140 (MQ=255) tttCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGACCTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACt > 2:1750783/1‑140 (MQ=255) ctcCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCg < 2:1470860/140‑1 (MQ=255) ctcCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCg < 1:1091465/140‑1 (MQ=255) ccTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCa < 2:429404/140‑1 (MQ=255) aCCTGTGGTTATGACCCTCTTCACATTTCGGGCCAATACTTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCACTGGCCGGTTTCCGTTGTTCCTCAAGCTTTCAGACGAATTGCTTACTTCGCAGCCtg > 2:3073016/1‑140 (MQ=255) aCCTGTGGTTATGACCCTCTTCACATTTCGGGCAAAGAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCtg < 2:2839870/140‑1 (MQ=255) aCCTGTGGTTATGACCCTCTTCACATATCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCtg < 1:6398610/140‑1 (MQ=255) aCCTGGGGTTATGACCCTCTTCACATTGCGGGCACATAATTCGCGAAGAGAATTAAGTACTCA‑GG‑CC‑‑A‑AAAA‑AATCCGGCGCAGTGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCtg > 2:5360059/1‑140 (MQ=255) tgGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGAt > 2:6334162/1‑140 (MQ=255) aTGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTACTCAATCTATCAGACGAATTGATTAATTCGCAGCCTGTGGATAAgtg > 2:883622/1‑140 (MQ=255) aTGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAgtg > 1:5618956/1‑140 (MQ=255) gACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTc < 2:6066674/140‑1 (MQ=255) gACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTc < 2:3186661/140‑1 (MQ=255) gACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGAAACTTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAAGGGCCGGTTTCCGTTGGTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTc < 2:574726/140‑1 (MQ=255) aCCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCg > 2:2206818/1‑140 (MQ=255) ccTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTa > 2:4778726/1‑140 (MQ=255) ccTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTa > 2:1903395/1‑140 (MQ=255) ccTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTa < 1:4784552/140‑1 (MQ=255) ccTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTa > 2:4224692/1‑140 (MQ=255) tctTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTAtt > 1:3892551/1‑140 (MQ=255) tctTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTAtt > 1:5733146/1‑140 (MQ=255) tctTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTAtt > 1:6106331/1‑140 (MQ=255) tctTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTAtt > 1:5480692/1‑140 (MQ=255) tctTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTAtt < 2:1528548/140‑1 (MQ=255) ctTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTATTc > 2:5316029/1‑140 (MQ=255) ctTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTATTc > 2:4883095/1‑140 (MQ=255) ttCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTATTCa > 1:4215416/1‑140 (MQ=255) acaTTTCGGGCAAATAATTCGCGAAGATAATTAAGCACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTATTCAGca < 1:3604795/140‑1 (MQ=255) acaTTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTATTCAGca < 1:675462/140‑1 (MQ=255) acaTTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTATTCAGca < 2:3306729/140‑1 (MQ=255) caTTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCAAA‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTATTCAGca < 1:1615408/140‑1 (MQ=255) tttCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTATTCAGCACAg > 1:2096708/1‑140 (MQ=255) tttCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTATTCAGCACAg > 1:269912/1‑140 (MQ=255) gggCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTATTCAGCACAGGTCt > 1:3245975/1‑140 (MQ=255) gggCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTATTCAGCACAGGTCt > 2:1271340/1‑140 (MQ=255) gggCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTATTCAGCACAGGTCt > 2:6181177/1‑140 (MQ=255) aataatTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTATTCAGCACAGGTCTGATaa > 1:3990081/1‑140 (MQ=255) aatTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCACTGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTATTCAGCACAGGTCTGATAACCg < 1:263876/140‑1 (MQ=255) aatTCGCGAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAAGGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTATTCAGCACAGGTCTGATAACCg < 1:1363548/140‑1 (MQ=255) cgAAGATAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTATTCAGCACAGGTCTGATAACCGGAGTtg < 2:2973711/140‑1 (MQ=255) tAATTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTATTCAGCACAGGTCTGATAACCGGAGTTGATGACa > 1:5398958/1‑140 (MQ=255) aaTTAAGAACTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTATTCAGCACAGTTCTGATAACCGGAGTTGATGACAt > 1:2507748/1‑140 (MQ=255) acacA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTACATACGAATTGATTACATCGCAGCCTGTGGATCAGTGTCGTATTCAGAACAGGTCTGAAAACCCGAGTTGATGACATGTCCGGTa > 2:5104596/4‑140 (MQ=255) aCTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTATTCAGCACAGGTCTGATAACCGGAGTTGATGACATGTCCGGTa > 1:4489088/1‑140 (MQ=255) cTCA‑GG‑CCA‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTATTCAGCACAGGTCTGATAACCGGAGTTGATGACATGTCCGGTat > 2:228691/1‑140 (MQ=255) | TGGCTGAAAGGAGTATACGGTATAGACCTGAGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCA‑GG‑CC‑‑A‑AAAA‑AA‑CCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTATTCAGCACAGGTCTGATAACCGGAGTTGATGACATGTCCGGTATCAT > NZ_CP025268/1826539‑1826810 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |