| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 1,855,625 | +C | intergenic (+116/‑50) | sppA → / → ansA | signal peptide peptidase SppA/asparaginase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 1,855,621 | 1 | . | C | 97.7% | 1351.7 / 20.0 | 397 | intergenic (+112/‑54) | sppA/ansA | signal peptide peptidase SppA/asparaginase |
| Reads supporting (aligned to +/- strand): ref base . (4/5); new base C (146/242); total (150/247) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.35e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 417 total aligned reads displayed.
TTGCCTGACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CT‑CCCCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGAGCAGGGTTATATACCGGTG > NZ_CP025268/1855482‑1855755 | ttGCCTGACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATATTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATCTTTCCTTATCCGCATAGTATCAGGTGCG‑Ct < 1:5740098/140‑1 (MQ=255) tGCCTGTCCTGCGCCTACATGGGGTAATTCTTGTACTGAGTGGGCGTCAGTTCGTCGGCGTCTTTATTTTTTACGTCGACGAATCGGCTTCCCGCTGTGTCGCCGCAGTTGTGGTTATCGGCATTGGATCAGGGGCG‑CT‑c > 2:11552/1‑140 (MQ=255) tGCCTGACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CT‑c > 1:4530788/1‑140 (MQ=255) cTGACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CT‑cccc < 1:3401183/140‑1 (MQ=255) aCCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTGTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CT‑ccccctg > 2:5380397/1‑137 (MQ=255) tGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCt < 1:4112637/140‑1 (MQ=255) tGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCt < 1:2976578/140‑1 (MQ=255) aCATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACCTTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTAGCCCCAGAGTTGCTTAGACGCAGAGTATCAGGTGCG‑CTCCCCCTGCCTCACGtat > 2:6439796/1‑140 (MQ=255) cATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGtata < 2:2892100/140‑1 (MQ=255) cATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGtata < 1:5355470/140‑1 (MQ=255) aaGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTg < 1:1362929/140‑1 (MQ=255) aaGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTg < 2:1236938/140‑1 (MQ=255) aaGTATAGTACTGAGTGGCCGACAGATAGTCGGACACATTATTTTTTAAGTCGACGAATCCTATTCCCGCTGTTTCGCCCCTTATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATAGACTTTTg < 2:923410/140‑1 (MQ=255) aGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGc < 2:5898177/140‑1 (MQ=255) gTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGct < 1:3215256/140‑1 (MQ=255) tGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCttt < 1:2160322/140‑1 (MQ=255) tGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCttt < 1:764862/140‑1 (MQ=255) tGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCAGAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCttt < 1:2494530/140‑1 (MQ=255) tGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTAGCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCttt > 2:573800/1‑140 (MQ=255) tGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGGATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGata < 1:1304172/140‑1 (MQ=255) tGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGata < 1:2346664/140‑1 (MQ=255) tGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGata < 2:1817859/140‑1 (MQ=255) tGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGata < 1:3717222/140‑1 (MQ=255) aGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGACTCCTCTTCCCGCGGTTTCGCCCCATAATTCATTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGctagc > 2:505068/1‑138 (MQ=255) aGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCAc > 1:1413680/1‑114 (MQ=255) aGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATAtc > 1:926220/1‑140 (MQ=255) aGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATAtc > 1:6087936/1‑140 (MQ=255) aGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATAtc > 1:6192310/1‑140 (MQ=255) aGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATAtc > 1:2813918/1‑140 (MQ=255) tGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATAtcat > 1:1931901/1‑140 (MQ=255) tGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATAtcat > 2:2353757/1‑140 (MQ=255) ggCCTACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCGCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATTCTTTTGCTCTTACGATAtcatt < 2:3199580/140‑1 (MQ=255) ggCCGCCAGATCGTCGGCCACATTATTTTTTACGTCGACGACGCCTCGTCCCGCTGTTTCGCCCCATTTTTCCTTATCCGCCTAGTAGCAGGTGCGCCC‑CCCCTGCCTCACGTATATACTTTTGCTCTTTCGATAtcatt < 2:2563192/140‑1 (MQ=255) ggCCGACCGATCGTCGGCCACATTATATTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTCTCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATAtcatt < 2:799369/140‑1 (MQ=255) ggCCGACAGATCGTCTGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATTTTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATAtcatt < 2:2815011/140‑1 (MQ=255) ggCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCNTAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATAtcatt < 1:5696367/140‑1 (MQ=255) ggCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATAtcatt < 2:6311176/140‑1 (MQ=255) ggCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATAtcatt < 1:4703097/140‑1 (MQ=255) ggCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATAtcatt < 1:3323907/140‑1 (MQ=255) ggCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATAtcatt < 2:4890402/140‑1 (MQ=255) ggCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATAtcatt < 2:3446151/140‑1 (MQ=255) ggCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATAtcatt < 1:4901563/140‑1 (MQ=255) ggCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATAtcatt < 1:1032389/140‑1 (MQ=255) ggCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATAtcatt < 1:4801862/140‑1 (MQ=255) ggCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCGGCCTCACGTATATACTTTTGCTCTTTCGATAtcatt < 2:3563855/140‑1 (MQ=255) ggCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACAAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATAtcatt < 1:4034854/140‑1 (MQ=255) ggCCGACAGATCGTCGGCCACATTATTTATTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATAtcatt < 1:4209373/140‑1 (MQ=255) gCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCGTTCGATAtcattc > 2:5983696/1‑140 (MQ=255) ccGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATAtcattca > 2:4134270/1‑140 (MQ=255) aCAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCatat < 2:4588635/140‑1 (MQ=255) aCAGATCGTCGGCCACATTATATTTTACGTCGTCGAATACTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCatat < 2:4675726/140‑1 (MQ=255) aGATCGTCGGCCACATTATTTTTTAAGTCGACGAATACTCTTCCAGCGGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCAGCCACACGGATATAATTTTGCTCATTCGATATCATTCaaataa > 2:2743248/1‑138 (MQ=255) aTCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCatatcaat > 1:2002190/1‑140 (MQ=255) tcgtcgGCCACATTATTTTTTACGTCGACGCATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCatatcaata < 2:175239/140‑1 (MQ=255) tcgtcgGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCatatcaata < 1:2601599/140‑1 (MQ=255) tcgtcgGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCatatcaaca < 2:6087935/140‑3 (MQ=255) ggCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCAAGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATg > 2:1322810/1‑140 (MQ=255) gCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGc > 1:4403939/1‑140 (MQ=255) tACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAAtt > 2:5218570/1‑140 (MQ=255) acttCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCACAAGTAATCAAttt > 2:3995010/4‑140 (MQ=255) cGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑Ct < 1:4058807/66‑1 (MQ=255) gTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTAc < 1:3976223/140‑1 (MQ=255) tCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACg < 2:2072904/140‑1 (MQ=255) cgacgaATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGt > 1:2798608/1‑140 (MQ=255) cgacgaATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGt > 1:2734485/1‑140 (MQ=255) gacgaATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTCTCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGtt < 2:1533588/140‑1 (MQ=255) acgaATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTg < 1:5237733/140‑1 (MQ=255) cTGTTTCGCCCCATATTTCCTTATCCGCCTAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTCCACGGGCGGGAc < 2:5519656/140‑1 (MQ=255) gTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATCTCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCa > 2:5653461/1‑140 (MQ=255) gTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCa > 1:5459438/1‑140 (MQ=255) gTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCa < 2:3043696/140‑1 (MQ=255) tttCGCCCCATATTTCCTTAGCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCAt < 2:745418/140‑1 (MQ=255) cccATATTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGAt < 1:2425320/140‑1 (MQ=255) atatTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCa < 1:6236604/140‑1 (MQ=255) atatTTCCTTATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCa < 2:3763627/140‑1 (MQ=255) tATCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGa > 1:164669/1‑140 (MQ=255) aTCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGAg < 1:4644888/140‑1 (MQ=255) aTCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGAg < 1:649294/140‑1 (MQ=255) aTCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGAg < 2:5469532/140‑1 (MQ=255) aTCCGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGAg < 2:5312903/140‑1 (MQ=255) ccccATACTATCAGGTGCG‑CTCCCCCTGCCTCACGAATATACTGGTGCTCTTTCGAAAACATTCATAACAATATCATGCACAAGAAATAAATGTACGTTGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGAGCa < 2:1650884/137‑1 (MQ=255) ccGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGAGCa < 1:4856640/140‑1 (MQ=255) ccGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGAGCa < 1:850462/140‑1 (MQ=255) ccGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGAGCa < 1:3483400/140‑1 (MQ=255) cGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGAGCAg < 1:1607452/140‑1 (MQ=255) cGCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGAGCAg < 2:2282364/140‑1 (MQ=255) gCATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGAGCAgg > 2:4716632/1‑140 (MQ=255) cATAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTGTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGAGCAggg > 2:219239/1‑140 (MQ=255) aTAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGAGCAGGGt > 2:4049055/1‑140 (MQ=255) aTAGTATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGAGCAGGGt > 1:3099568/1‑140 (MQ=255) tATCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGAGCAGGGTtata > 2:5104686/1‑140 (MQ=255) tCAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGAGCAGGGTtatata > 1:4303365/1‑140 (MQ=255) cAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGAGCAGGGTTATATAc < 2:4456041/140‑1 (MQ=255) cAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGAGCAGGGTTATATAc < 1:3830782/140‑1 (MQ=255) cAGGTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGAGCAGGGTTATATAc < 2:3381251/140‑1 (MQ=255) ggTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGAGCAGGGTTATATACCg > 1:6382839/1‑140 (MQ=255) ggTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGAGCAGGGTTATATACCg > 2:4371331/1‑140 (MQ=255) gTGCG‑CTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGAGCAGGGTTATATACCgg > 2:1372198/1‑140 (MQ=255) gcg‑cTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGAGCAGGGTTATATACCGgtg > 2:3619325/1‑140 (MQ=255) gcg‑cTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGAGCAGGGTTATATACCGgtg > 2:1491285/1‑140 (MQ=255) | TTGCCTGACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCG‑CT‑CCCCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGAGCAGGGTTATATACCGGTG > NZ_CP025268/1855482‑1855755 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |