| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 1,879,869 | (C)5→6 | pseudogene (521/821 nt) | nimR ← | DNA‑binding transcriptional regulator NimR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 1,879,864 | 1 | . | C | 99.1% | 1119.7 / 1.8 | 323 | pseudogene (526/821 nt) | nimR | DNA‑binding transcriptional regulator NimR |
| Reads supporting (aligned to +/- strand): ref base . (2/1); new base C (162/158); total (164/159) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 368 total aligned reads displayed.
GCCTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TG‑CCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCTGCGGG > NZ_CP025268/1879725‑1879998 | ccTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TG‑c > 1:2618686/1‑140 (MQ=255) ccTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TG‑c > 2:2448575/1‑140 (MQ=255) ccTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TG‑c > 1:2362707/1‑140 (MQ=255) ccTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TG‑c > 2:4997110/1‑140 (MQ=255) ttCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TG‑cccc > 1:6139798/1‑140 (MQ=255) ttCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TG‑cccc < 1:3130654/140‑1 (MQ=255) cACTAATCCCTGAAGCGCCATAATCAGCTGTAACTTCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAACAGCCAGCCCATTGCCCCAA‑TG‑cccccc > 2:1121872/1‑139 (MQ=255) cACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TG‑cccccc > 2:3108155/1‑139 (MQ=255) cACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TG‑cccccc > 1:2731065/1‑139 (MQ=255) cACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TG‑cccccc > 1:3638301/1‑139 (MQ=255) actactCCCTGAAGCGCCATAATCCGCTGTAACTGCTGACGCCACTGGCGAAAACTCACCCCCGTCTCTTTTACTATCCGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TG‑cccccca < 2:6324057/140‑3 (MQ=255) aTCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTCCTATCAGTCGGGCACGAGTGCGTTCACTCATCGCGAAAAAGCCAGCCCCTTGCCCCTA‑TG‑ccccccacgcg > 2:376020/1‑134 (MQ=255) tCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGa > 2:4358480/1‑140 (MQ=255) cccTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGAc < 1:709962/140‑1 (MQ=255) tGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAgg > 2:5418450/1‑140 (MQ=255) tGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAgg > 1:103530/1‑140 (MQ=255) gactcgcCATAAACAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTGTACAATCAGTCGGGCAAGATTGAGTTCACACATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGc > 2:2628718/5‑140 (MQ=255) gAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGc > 2:2741554/1‑140 (MQ=255) gAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGc > 2:3322139/1‑140 (MQ=255) gAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGc > 2:1361498/1‑140 (MQ=255) gAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGc > 2:3979495/1‑140 (MQ=255) cgcCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCtt > 1:931428/1‑140 (MQ=255) gcCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCttt < 1:3677606/140‑1 (MQ=255) ccATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTc > 1:792978/1‑140 (MQ=255) ccATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTc > 1:6288097/1‑140 (MQ=255) ccATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTc > 1:5460521/1‑140 (MQ=255) ccATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTc > 2:4293957/1‑140 (MQ=255) tCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCcatc < 2:767597/140‑1 (MQ=255) tCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCcatc < 1:128165/140‑1 (MQ=255) tCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCcatc < 2:5302227/140‑1 (MQ=255) tCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTAATATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCcatc < 2:2659392/140‑1 (MQ=255) aGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCcatcat < 1:4779583/140‑1 (MQ=255) cTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCAtct < 1:1798599/140‑1 (MQ=255) cTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCAtct < 1:4856093/140‑1 (MQ=255) tAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTcca > 2:1170635/1‑140 (MQ=255) tAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTcca > 1:3494664/1‑140 (MQ=255) aCTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACGATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTccacc < 2:2570168/140‑1 (MQ=255) tgACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGt > 2:3600472/1‑140 (MQ=255) tgACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGt > 1:3354561/1‑140 (MQ=255) gACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTg < 1:2418315/140‑1 (MQ=255) aCGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAATAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCTTCAGGCCCTTTCGCCATCATCTCCACCATCGTGc < 2:1816127/140‑1 (MQ=255) cGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCg > 1:3782012/1‑140 (MQ=255) cGAAAACTCAACCCCTTATCTTTTACTATCAGTCGGGAAAGATTGCGTTCACTCATCTCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAgg < 2:2902417/140‑1 (MQ=255) cGAAAACTCAACCCCGTCTCTTGTACTCTCAGTCGGGCAAGAGTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAgg < 2:1652510/140‑1 (MQ=255) gAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGa < 1:5976119/140‑1 (MQ=255) aaCTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATga > 2:4815133/1‑140 (MQ=255) acgcAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCAGCGCAAAAAAGCCAGACCATTGCCCCAA‑GGCCCCCCACTCGACAGGCCCTTTCGCCATCAGCTCCACCATCGTGCGGATTTTAGGATgag < 2:5973472/137‑1 (MQ=255) cTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATgaga < 2:424478/140‑1 (MQ=255) aaCCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGagaaga > 1:4562407/1‑140 (MQ=255) ccccGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCAGCGCAAAAAAGCCAGCCCATTGCCCCCA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGGGCGGATTTTAGGATGAGAAGaaa < 2:6227766/140‑1 (MQ=255) ccccGTCTCTTTTACTATCAGTCGGGCAAGAGTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGaaa < 2:1271397/140‑1 (MQ=255) cGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACgg > 2:2818747/1‑140 (MQ=255) gTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCCCTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACggg < 1:2520803/140‑1 (MQ=255) gTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACggg < 1:3203871/140‑1 (MQ=255) tctcTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAACAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGc < 2:1363740/140‑1 (MQ=255) tctcTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGTATGAGAAGAAACGGGc > 2:6092405/1‑140 (MQ=255) tctcTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGc < 1:147847/140‑1 (MQ=255) tctcTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑GGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGc < 2:3374438/140‑1 (MQ=255) ttACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGc < 2:5081032/140‑1 (MQ=255) tATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCt < 1:5839812/140‑1 (MQ=255) tATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCt > 1:5090569/1‑140 (MQ=255) aTCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtg > 1:4690269/1‑140 (MQ=255) tCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATTC‑CCCCCACTCGTCAGGCCCTTTCGCCATCATGTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgt > 2:5779987/1‑140 (MQ=255) tCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgt > 1:1666172/1‑140 (MQ=255) aGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgttg > 1:1116250/1‑140 (MQ=255) aGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgttg > 1:1392176/1‑140 (MQ=255) aGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgttg > 1:2991319/1‑140 (MQ=255) aGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgttg > 1:4263861/1‑140 (MQ=255) gTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgttgt < 1:2089303/140‑1 (MQ=255) gggCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTGAGGATGAGAAGAAACGGGCAGGTGCAGCtgttgttgt > 2:2353212/1‑140 (MQ=255) ggCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTtgtg < 2:1894969/140‑1 (MQ=255) ggCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGGGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTtgtg > 1:3564162/1‑140 (MQ=255) gCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTgg > 2:1523178/1‑140 (MQ=255) cAAGATTGCGTTCACTCATCGCAAAACAGCCAGCCCATTGCCCCAA‑TGCCCCCCACGCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTCGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGgc < 2:3003406/140‑1 (MQ=255) cAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGgc < 1:6457319/140‑1 (MQ=255) cGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCGTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCGGTTGTTGTGGCTGCTGAgg > 2:5733980/1‑140 (MQ=255) gTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAggg > 2:3513510/1‑140 (MQ=255) gTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAggg > 1:2820517/1‑140 (MQ=255) gTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATGTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAggg > 2:4756102/1‑140 (MQ=255) ttCACTCATCGCAAACAAGCCAGCCCATTGCCCCAA‑TGCCCCCCCCTCGACAGGCCCTTTCGCCATCATCTCCACCCTCGTGCGGATTTTAGGAAGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGa < 2:2285540/140‑1 (MQ=255) ttCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGa < 1:1868038/140‑1 (MQ=255) aCTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGtt > 1:5572611/1‑140 (MQ=255) tCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTtca < 2:3429972/140‑1 (MQ=255) cATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTtcat < 2:5452442/140‑1 (MQ=255) cATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTtcat < 1:6025523/140‑1 (MQ=255) tCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATGTTAGGATGAGACGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTtcatca > 1:461822/1‑140 (MQ=255) tcgcaaaaaGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCaa > 1:1965432/5‑140 (MQ=255) cAAAAAAGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAAc < 2:5573284/140‑1 (MQ=255) aaaaaaGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACa < 1:5345394/140‑1 (MQ=255) aaGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGAc < 1:4118954/140‑1 (MQ=255) aaGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGAc < 2:659482/140‑1 (MQ=255) aaGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGAc < 1:5230801/140‑1 (MQ=255) aaGCCAGCCCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGAc < 1:2456995/140‑1 (MQ=255) aaGACAGCCCATTGCCCCAT‑TGCCCCCCTCTCTACAGGCCCTTTCGCCATAATCTCCACCATCGTGCGGTTTTTAGGATGAGAAGAAACGTGCAGGTGCAGCTGTTTTTGTGGCTGCTGTGGGTGTTCATCAAACAGGAc < 2:89388/140‑1 (MQ=255) agccagccCATTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGGGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGAcc > 1:2264253/1‑140 (MQ=255) gccCTTTGCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCTTCGTGAGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTTTTGTTGTGGCTGCTGAGGGAGTTCATCTAACAGGACCTGAAt < 2:4693478/140‑1 (MQ=255) gCCCCAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCTg < 2:2109655/140‑1 (MQ=255) ccccAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCTGc < 1:3969556/140‑1 (MQ=255) cccAA‑TGCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCTGCg < 2:713531/140‑1 (MQ=255) ccAA‑TGCCCCCCACACGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCTGCgg < 1:1189522/140‑1 (MQ=255) | GCCTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TG‑CCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCTGCGGG > NZ_CP025268/1879725‑1879998 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |