| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 2,204,490 | (A)7→8 | pseudogene (175/3632 nt) | CXP41_RS11705 → | DUF4132 domain‑containing protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 2,204,483 | 1 | . | A | 93.4% | 1109.7 / 59.6 | 304 | pseudogene (168/3632 nt) | CXP41_RS11705 | DUF4132 domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base . (9/11); new base A (147/136); total (157/147) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.46e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 330 total aligned reads displayed.
ATAACGCCCAACTGGAACTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑G‑A‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGGCGGCGCTAGCCTGTATCGCG > NZ_CP025268/2204344‑2204617 | aTAACGCCCAACTGGAACTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGagaa‑g < 1:5967584/140‑1 (MQ=255) tAACGCCCAACTGGAACTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGagaa‑g‑a > 1:3298678/1‑140 (MQ=255) aCTGGAACTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑G‑a‑aa‑aaaaaca > 1:4698183/1‑137 (MQ=255) aCTGGAACTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑G‑a‑aa‑aaaaaca > 2:2778775/1‑137 (MQ=255) aCTGGAACTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑G‑a‑aa‑aaaaaca < 1:706182/140‑4 (MQ=255) aCTGGAACTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑G‑a‑aa‑aaaaaca < 2:4107162/140‑4 (MQ=255) gAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGc > 2:2587269/1‑140 (MQ=255) aaaaaaGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATga < 1:4070641/140‑1 (MQ=255) aaGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACCTTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAAt > 2:1922814/1‑140 (MQ=255) aaGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAAt > 1:3663863/1‑140 (MQ=255) aaGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATGGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAAt > 2:2993597/1‑140 (MQ=255) aGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAAtt < 2:429863/140‑1 (MQ=255) gCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAC‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTCTGAGAAtttt > 2:5602412/1‑140 (MQ=255) cAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAAttttt > 1:5958304/1‑140 (MQ=255) aaaaCGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTc < 2:2060224/140‑1 (MQ=255) cgccgcTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTg < 1:617343/140‑1 (MQ=255) gcTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGt > 1:1922793/1‑140 (MQ=255) tCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTgg < 1:381032/140‑1 (MQ=255) cAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGc < 1:5324214/140‑1 (MQ=255) cATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTc < 1:3066397/140‑1 (MQ=255) cATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTc < 2:495080/140‑1 (MQ=255) gtcgCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGcc < 1:1524599/140‑1 (MQ=255) gtcgCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGcc > 2:6194137/1‑140 (MQ=255) tGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCAc > 1:3623056/1‑140 (MQ=255) tGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCAc > 2:1896012/1‑140 (MQ=255) tGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCAc > 2:3380129/1‑140 (MQ=255) tGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCAc > 1:1117714/1‑140 (MQ=255) gCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCAACCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑G‑ACAA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGc < 2:6437177/140‑1 (MQ=255) ccGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CCTTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCa < 2:3559910/140‑1 (MQ=255) ccGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCa > 1:6296644/1‑140 (MQ=255) ccGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCa < 1:5042682/140‑1 (MQ=255) gCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGcc < 1:1465024/140‑1 (MQ=255) gCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGcc > 2:2166992/1‑140 (MQ=255) gCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGAGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGcc > 2:1139579/1‑140 (MQ=255) aaCCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATc < 1:2841515/140‑1 (MQ=255) tgtCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑G‑A‑AA‑AAAATCATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTg > 1:4561236/1‑140 (MQ=255) gtCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGa < 1:3480019/140‑1 (MQ=255) gtCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGa > 1:4209192/1‑140 (MQ=255) gtCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGCCCGCCATCACGCAGGCCATCAACTTGa < 1:3934140/140‑1 (MQ=255) gTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCgg > 2:482054/1‑140 (MQ=255) tATCACTGGAAGTCTCATCCAGACCTTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGTCCATCAACTTGATCGGCg > 2:3497296/1‑140 (MQ=255) tATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCg > 1:506070/1‑140 (MQ=255) tATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCg > 2:6242250/1‑140 (MQ=255) cACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAac > 1:5606539/1‑140 (MQ=255) cACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAac > 1:1193225/1‑140 (MQ=255) cACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAac > 1:6101780/1‑140 (MQ=255) cTGGAAGTCTCCTCCCGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATTAGAATTTTTCCCTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAacac > 2:3702313/1‑140 (MQ=255) cTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAacac > 2:4341695/1‑140 (MQ=255) cTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAacac > 1:1003922/1‑140 (MQ=255) cTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAacac > 2:1769961/1‑140 (MQ=255) cTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAacac > 1:2863768/1‑140 (MQ=255) tGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCAGGCGTTATGAGAATTTTTCACTGGAGTGGCAGACCGCCATCACGCAGGCCATCAACTTGATCGGCGAAcaca < 2:5492998/140‑1 (MQ=255) ggAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACaa < 2:4548611/140‑1 (MQ=255) ggAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACaa > 2:3175313/1‑140 (MQ=255) ggAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACaa < 1:5296653/140‑1 (MQ=255) ggAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACaa > 1:4967982/1‑140 (MQ=255) tctcATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCt < 1:2484779/140‑1 (MQ=255) ctcATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTc > 1:1454662/1‑140 (MQ=255) ctcATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTc > 1:4905362/1‑140 (MQ=255) ctcATCCAGACATTGGGTGATGAATTGCTACAAAAAGCAGAGCA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAACCCCTc < 2:2920953/140‑1 (MQ=255) aTCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAAt > 1:4235110/1‑140 (MQ=255) aTCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAAt > 1:5098201/1‑140 (MQ=255) aTCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGACTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAAt > 2:1632969/1‑140 (MQ=255) cATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATcccggcc > 1:5156382/1‑140 (MQ=255) tGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATcccggcccgg > 2:3987463/1‑140 (MQ=255) tGGGTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATGGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATcccggcccgg > 2:6326041/1‑140 (MQ=255) ggTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGAc > 2:5047778/1‑140 (MQ=255) ggTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCAACAACTTGATCGGCGAACACAAACCCCCAATCCCGGCCCGGAc < 2:746247/140‑1 (MQ=255) gTGATGAATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTTTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACa < 2:5198497/140‑1 (MQ=255) tgaATTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATgg < 1:2587269/140‑1 (MQ=255) gacatGCTACAAAATGCTGAGAA‑G‑A‑AACAATA‑CATAGTATGGCGGTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCTCGCAGGCCAACAACTAGTTCGGCGAACACAAACCCTCAATCCCGGCCAGGACATTggc > 2:5801011/5‑140 (MQ=255) aTTGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATggcgg < 2:2721418/140‑1 (MQ=255) tgatACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 2:6021952/137‑1 (MQ=255) tGCTACAACAAGCTGAGAA‑G‑A‑AACAAAA‑CCTGGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 2:2283397/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAATA‑A‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTAAATCCCGGCCCGGACAATGgcggcg < 2:1077276/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGTCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg > 2:2415386/1‑140 (MQ=255) tGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg > 1:2941857/1‑140 (MQ=255) tGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:4864978/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:4423579/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:4369391/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:1314446/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:5420908/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:4361141/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:731628/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 2:1030024/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:1850725/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:2189940/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 2:3093318/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATAACGCAGGCCATCAACTTGAGCGGCGAACACAAACCCTCAATCCCGGCCCGGACTAATgcggcg > 2:1317817/1‑140 (MQ=255) gCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGGCGgcgc > 2:5341099/1‑140 (MQ=255) gCTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGGCGgcgc > 1:5730058/1‑140 (MQ=255) cTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 2:5683722/138‑1 (MQ=255) cTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGGCGGCGCt > 1:6247093/1‑140 (MQ=255) cTACAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGGCGGCGCt > 2:4168146/1‑140 (MQ=255) cAAAAAGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAATCCCTCAATCCCGGCCCGGACAATGGCGGCGCTAGc > 2:1402967/1‑140 (MQ=255) aGCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGGCGGCGCTAGCCTGTa > 1:6306157/1‑140 (MQ=255) gCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGGCGGCGCTAGCCTGTAt < 1:3545721/140‑1 (MQ=255) gCTGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGGCGGCGCTAGCCTGTAt < 1:4478962/140‑1 (MQ=255) tGAGAA‑GAA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGGCGGCGCTAGCCTGTATcg < 1:321950/140‑1 (MQ=255) agaa‑gaA‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGGCGGCGCTAGCCTGTATcgcg < 2:4913756/140‑1 (MQ=255) | ATAACGCCCAACTGGAACTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAA‑G‑A‑AA‑AAAA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGGCGGCGCTAGCCTGTATCGCG > NZ_CP025268/2204344‑2204617 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |