| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 2,233,225 | 0 | T | A | 33.8% | 99.4 / 23.4 | 84 | intergenic (+125/+248) | yohP/dusC | small membrane protein YohP/tRNA dihydrouridine(16) synthase DusC |
| Reads supporting (aligned to +/- strand): ref base T (19/34); new base A (27/0); total (48/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.03e-09 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGC‑TTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATG > NZ_CP025268/2233086‑2233361 | aaGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAAt < 1:436651/140‑1 (MQ=255) gatgatATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATCATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATcg < 1:4137741/140‑1 (MQ=255) gatgatATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGGCAAAcg > 2:1040956/1‑140 (MQ=255) gatgatATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATcg < 1:2730210/140‑1 (MQ=255) tatTTTAAAATTACTTAATGTCACCAGGTCCGAAAATAACGAGAATATTTCAGTCTCACATCCAGTTGCGCTCCTGTCATGTGCATTGCTTCATATACTCACTGGCGCACGGAGCGC‑GCAGGGGGCGGCCAATcgccgcc < 2:5376117/140‑1 (MQ=38) tatTTTAAAATTAATTAATGTCATCAGGTCCGAACATAACGAGAATAGTTCAGTCTCTCATCCTTTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCCAGGAGCGC‑GCAGGGGGCGGCCAATcgccgcc < 2:2279125/140‑1 (MQ=255) tatTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCCGGGGGCGGCCCAAagccgcc > 1:5878337/1‑140 (MQ=255) tatTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAAAagccgcc > 2:2170857/1‑140 (MQ=255) tAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GGAGGGGGCGGCCAAAAGcccccccccc > 1:1440438/1‑140 (MQ=255) tGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAAAAGCCGCCGCCCCCAGCACCCCCggg > 2:2469822/1‑140 (MQ=255) atcaGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GGGGGGGGGGGGCCAAAGCCCCCCCCCCCAccccccccccgcgcg > 1:338125/1‑133 (MQ=255) atcaGGTCCGAAAATAACGAGAATATTTCAGTCTCGCAGCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAAACGCCGCCGCCCCCCGCACCCCCCGGcgct > 2:177772/1‑140 (MQ=37) gTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GGAGGGGGCGGCCAAAACCCCCCCCCCCCAGCACCCCCCGGCACAGGCGa > 1:4518164/1‑140 (MQ=25) gTCCGAAAAAAACGATAAAATTTAAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCTCCGCCGCCCCCTGCACCCCCGGGCTCAGGCGa > 2:1840921/1‑140 (MQ=21) cGAAAATAACGATAATATTTCAGTCTGTCATCATGTTGCGCTCCTGTCATGTGCATTTCTTCATATAATCACTGTCGCAAGGAGCGC‑GCGGGGGGGGGCCCACAGCCCCCGCCCCCCCCACCCCCGCGCCCCGGCGacac > 1:3250180/1‑137 (MQ=255) cGAAAATAACGAGAATATTTCCGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCCGGGGGCGGGCCATCGCCGCCGCCCCCAGCACCCCCCGGCTCTGGCGAACa > 2:1137758/1‑140 (MQ=25) cGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGCGCGC‑GCAGGGGGCGGCCAAACGCCGCCCCCCCCAGCACCCCCCGGCTATGGCGACCa > 2:3429528/1‑140 (MQ=25) cGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGGCGGGGGGGGGCCAA‑AGCCCCCCCCCCCACCCCCCCCCCGCACAGGCGAACa > 1:5086741/1‑140 (MQ=255) cGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCCAACGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACa > 2:5478160/1‑140 (MQ=255) aCGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATACTCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCCATCGCCGCCGCCCCCAGCACCCCCCGGCGCTGGCGAACAAAAAcgcc > 2:533402/1‑140 (MQ=21) aCGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GGGGGGGGGGGGCCCAAGCCCGCGCCCCCAGCACCCCCGCGCCCTGGGGGACaaaaaagcc > 1:6233075/1‑135 (MQ=255) atTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGcgcg < 2:6074919/140‑1 (MQ=255) ttCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGt < 2:2540438/140‑1 (MQ=255) tCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTACATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCACTCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTg < 1:5944908/140‑1 (MQ=255) gTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGccc < 1:4596370/140‑1 (MQ=255) ctcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATCTACTCACTGGCGCTAGGAGCGC‑GCCGGGGGCGGCGAATCGACGCCGCCCCCAGCACCCCCGGGCTCGTGCCTACAAAATAGCCGCTGCGCGGGGGCCGCgg > 2:1446302/1‑140 (MQ=255) tcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATAGACTCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCCGGCTCTGGCGAACAAAAACGCCGCAGCGCGGTGCCCTCGGc > 2:6191067/1‑140 (MQ=18) tCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGC‑TTa < 2:2947400/140‑1 (MQ=255) tCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGC‑TTa < 2:482024/140‑1 (MQ=255) tCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGA‑TTa < 2:5607223/140‑1 (MQ=255) ccTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGC‑TTAt < 2:3033912/140‑1 (MQ=255) ttGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGGGCAAGGAGCGC‑GCCGGGGGCGGCCAATCGCCGCCGCCCCGTGCAGCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGC‑TTTTCCCt < 1:2894524/140‑1 (MQ=18) ttGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCCAACGGCGCCGCCCCCAGCACCCCCCGGCTCTGGCGGACAAAAAAGCCGCTGCGCGGTGGCCTAGGC‑ttttacag > 2:3119261/1‑134 (MQ=18) ttGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAAAAGCCCCCCCCCCCAACACCCCCCGGCTCAGGCCGACAAAATCCCCGCTTCGCGGTGCCCACGGC‑TTATacca > 2:1788382/1‑139 (MQ=18) gcgcTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAAACGCCGCCGCCCCCTGCACCCCCGGGCTCAGGCGAACAAAATCGCCGCTGCGCGGTGCCCGCGGC‑GTATCCCATa > 2:2790123/1‑140 (MQ=18) cTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCCGGGGGGGGGCAATCCCCGCCGCCCCCAGCACCCCCCGGCTCGGGCGAACAAAAAAGCCGCCGCGCGGTGCCCACGGC‑GTATaccagaccg > 2:217282/1‑134 (MQ=18) cTCCTGTCATGTGCATTGCGACATATAATCACTGGCGCTAGGAGCGC‑GCAGGGGGCGGCCAATCGACGCCGGCCCCATCAACCACGGGCACAGGCGCACAAAATCCCCGCAGCGCGGTGCCCTCGGC‑TTATCCCTTACgg > 2:6029523/1‑140 (MQ=17) cTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCAGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCACGGC‑GTATACCATACGGcaa > 2:5514631/1‑138 (MQ=17) cTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAAACGCCGCCGCCCCCCGCCCCCCCCGGCAAAGGCGACCAAAAACGCCCCAGCGCGGGGCCCGCGGC‑GTATCCCATACGGcaa > 2:3531872/1‑138 (MQ=17) cTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAAACGCCCCCCCCCCCAGCACCCCCCGGCTCAGGCGAACAAAATCGCCGCTGCGCGGGGCCCACGGC‑ATATCCCGTAAGGcga > 2:484390/1‑138 (MQ=17) gTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGC‑TTATCCCTTACGGCTAcc < 2:1223201/140‑1 (MQ=255) tgCATTGCTTCATATAATCACTGGCGCACGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCAGCACCCCCCGGCGCTGGCGCACAAAATCCCCGCTGCGCGGTGCCCACGGC‑GTATCCCGTAAGGCAAACGGGGCg > 2:4391359/1‑140 (MQ=14) tgCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCCAAACCCCCCCCCCCCAGCACCCCCCGGCACAGGCGAACAAAATACCCCCTGCGCGGTGCCCACGGC‑AAATACCATACGGCGACCCCGTCg > 2:598304/1‑140 (MQ=9) cATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GGAGGGGGGGGCCCAACCCCGCCCCCCCCAGCACCCCCCCGCACTTGCGGACAAAAAAGCCGCGGCGCGGGGGCCGCGGC‑GTATACCATAAGGCGAACCGGTCggg > 2:3918679/1‑140 (MQ=255) cATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCCGGGGGGGGCCAAAAGCCGCCGCCCCCCGCACCCCCCGGCGCTGGCGAACAAAAAACCCCCGGCGCGGTGGCCACGGC‑GGATACCATAACGCTACCcgggaggg > 2:2313847/1‑135 (MQ=9) cATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGC‑TTATCCCTTACGGCTACCGGGTCggg < 2:752402/140‑1 (MQ=255) cATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGC‑TTATCCCTTACGGCTACCGGGTCggg < 1:3755834/140‑1 (MQ=255) ttGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGC‑TTATCCCTTACGGCTACCGGGTCgggag < 2:2637648/140‑3 (MQ=255) tGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGC‑TTATCCCTTACGGCTACCGGGTCGGgcgc < 2:2649059/140‑1 (MQ=255) tGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAAAAGCCGCCGCCCCCAGCACCCCCGGGCTCTGGCGAACAAAAAAGCCGCTTCGCCGTGCCCAAGGC‑ATATACCATACCGCTACCCGGTAGGgcgc > 2:3546706/1‑140 (MQ=14) cTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCCATAGCCGCCCCCCCCAGCCCCCCCCGGCTCTGGCGAACAAAAAAGCCCCGGCGCGGGGGCCACGGC‑ATATACCATAACGCAACCCGGTCGGGCGCGa > 2:5236769/1‑140 (MQ=9) tataATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGC‑TTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTaa < 2:1023299/140‑1 (MQ=37) tataATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGC‑TTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTaa < 2:5703274/140‑1 (MQ=37) tataATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGC‑TTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTaa < 2:6136056/140‑1 (MQ=37) taATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCACTCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGC‑TTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACa < 2:6321261/140‑1 (MQ=25) aaTCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAAGCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAACATCGCCGCTGCGCGGTGCCCTCGGC‑TTATCCCGGACGGCTACCGGGTCGGGCGCGAGGTAACAt < 2:1215651/140‑1 (MQ=255) tCACTGGCGCAAGGAGCGC‑GCCGGGGGCGGCCCAACCCCCCCGCCCCCCGCACCCCCCGGCGCTGGCGAACAAAAAAGCCCCGGCGCCGGGGCCACCGC‑GAATACCATACGGCAACCCGGGCGGGCGCGCGGTAAccaac > 2:4986354/1‑136 (MQ=2) tCACTGGCGCAAGGAGCGC‑GCCGGGGGCGGCCCAAACCCGCCCCCCCCCGCACCCCCCGGCACAGGCGGACAAAATACCCCGGGCGCCGTGCCCTCGGCGTAAGCCCTTA‑GGCAACCCGGTCGGGCGCGAGGTATCATcc > 2:2635728/1‑140 (MQ=2) tCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAAACCCCGCCCCCCCCAGCACCCCCCGGCTCAGGCGAACAAAAAAGCCCCAGCCCCGTGCCCCCCGC‑ATAACCCAAAAGGCAAACCGGTCCGGCGCCAGGTAACAAcc > 2:4465241/1‑140 (MQ=2) cTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATAGCCGCCCCCCCCAGCCCCCCCCGGCTCTGGCGAACAAAAACGCCGCTGCGCGGTGCCCACGGC‑GTATACCATACGGCTACCCGGTCGGGCGCGAGGTAACaaaccag > 2:1674609/1‑134 (MQ=11) cTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAAAAGCCGCCGCCCCCAGCACCCCCGGGCTCTTGCGCACAAAATCGCCGCTGCGCGGTGCCCTCGGC‑TTATCCCATAACGCTACCGGGTCGGGCGCGAGGTAACATcccag > 2:1675074/1‑138 (MQ=11) gcgcAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGC‑TTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTaa < 2:5318038/140‑1 (MQ=32) gcAAGGAGCGC‑GCAGGGGGCCGCCAAACGCCGCCGCCCCCAGCACCCCCGGGCTCTGGCGAACAAAAAAGCCCCGGCGCGGTGCCCACGGC‑TTATCCCTTACGGCTTCCGGGGGGGGCGCGAGGGAACATCCCAGTaaaa > 2:769329/1‑140 (MQ=11) aaGGAGCGC‑GCTGGGGGCGGCCCAACGCCGCCGCCCCCTGCACCCCCGGGCTAATGCGAACAAAATACCCGCAGGGCGGTGGCCTCGGC‑GTTTACCATACGGCAAACGGGTCGGGGGCGAGGGAAACACCCAGTaaaaag > 2:705589/1‑138 (MQ=2) aaGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGC‑TTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAAcg < 1:3405821/140‑1 (MQ=32) aGGAGCGC‑GGAGGGGGGGGCCCATAGCCGCCGCCCCCTGCCCCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGC‑GTATCCCTAACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAAcgc > 2:6009230/1‑140 (MQ=11) gAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGC‑TTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACgcgc < 2:5104303/140‑1 (MQ=32) cgc‑gcTGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGC‑TTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCt < 1:967010/140‑1 (MQ=17) cgc‑gcAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGC‑TTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCt < 2:1440438/140‑1 (MQ=32) cgc‑gcAGGGGGCGGCCAATAGCCGCCGCCCCCAGCACCCCCGGGCACTTGCGAAAAAAATCGCCGGTGCGCGGTGCCCTCGGC‑TTATCCCATACGGCTACCGGGTAGGGCGCGAGGGTACAACCCTGTAAAAAGCGcccg > 2:5539769/1‑139 (MQ=11) cgc‑gcAGGGGGCGGCCAAGCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGC‑TTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCt < 1:40257/140‑1 (MQ=17) gc‑gcAGGGGGCGGCCACTCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGC‑TTATCCCATACGGCTACCGGGTCGGGCGCGAGGTACCATCCCTGTGAAACGCGCCCTc < 1:733461/140‑1 (MQ=255) cAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGC‑TTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCGGTAAAACGCGCCCTCAGc < 2:3055755/140‑1 (MQ=17) gggggCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGC‑TTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGccc < 2:1809798/140‑1 (MQ=32) ggcggcCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGC‑TTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCcaca < 2:3309420/140‑1 (MQ=32) ggcggcCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGC‑TTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCcaca < 2:735868/140‑1 (MQ=32) ggcggcCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGC‑TTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCcaca < 2:1283432/140‑1 (MQ=32) ggcggcCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGC‑TTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCcaca < 2:6393353/140‑1 (MQ=32) ggcCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGC‑TTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATACCAGTAAAACGCGCCCTCAGCCCACAAcc > 2:5023845/1‑140 (MQ=12) ggcCAAACGCCGCCGCCCCCAGCACCCCCGGGCTCTGGCGAAAAAAATAGCCGCTGCGCGGTGCCCACGGC‑TTAAACCTTAAGGCTACCGGGTCGGGCGCGAGGTAACATACCAGTAAAAAGCGCCCACAGCCCACAAcc > 2:1883005/1‑140 (MQ=11) gcCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGC‑TTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCa > 2:3059787/1‑140 (MQ=32) gcCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGC‑GTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCa > 2:6439394/1‑140 (MQ=17) gcCAATCGCCGCCGCCCCCAGCACCCCCGGGCTCTGGCGAACAAAATAGCCGCTGCGCGGTGCCCTCGGC‑TTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACAACCa > 1:5005321/1‑140 (MQ=12) cAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGC‑TTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACAACCAtg > 1:241834/1‑140 (MQ=17) cAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGC‑TTATCCCGTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCCGCCCACATCCCtg > 1:3496030/1‑140 (MQ=12) | AAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGC‑TTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATG > NZ_CP025268/2233086‑2233361 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |