Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0252681,292,9820AG45.4% 88.6 / 223.6 192noncoding (55/132 nt)CXP41_RS06835RtT sRNA
Reads supporting (aligned to +/- strand):  ref base A (25/76);  new base G (46/38);  total (77/115)
Fisher's exact test for biased strand distribution p-value = 3.77e-05
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.77e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 195 total aligned reads displayed.

CGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGT‑GGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTG  >  NZ_CP025268/1292845‑1293112
                                                                                                                                          |                                                                                                                                  
cGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGT‑GGGGGAAGGATTACTAAGCGCTGCGCGCATCGCCCTTCGGGTCGTTTCATGACGCAACGCGCTCTCGCAGAcc                                                                                                                                  >  1:1563776/1‑139 (MQ=14)
  cttGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGT‑GGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCt                                                                                                                                <  1:3769614/138‑1 (MQ=255)
  cttGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGT‑GGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCt                                                                                                                                >  2:6114837/3‑140 (MQ=255)
  cATGGGCAGAATCATAGATTGCGGCTTCGCTTGAGATTTCAGGGACTATTGAAAGAGATGGTGGT‑GGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCt                                                                                                                                <  1:5925849/140‑1 (MQ=11)
  cATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGGAAGGATTAATCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGgcgc                                                                                                                                 >  2:3179992/1‑140 (MQ=11)
   ttGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGAAGGTGGT‑GGGGGAAGGATTACTCAGCGCTGCGCGCTGCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTc                                                                                                                               >  2:2897704/2‑140 (MQ=255)
     gggCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGT‑GGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGa                                                                                                                             >  1:311400/1‑140 (MQ=255)
      ggCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGT‑GGGGGAAGGATTATTCCTCGCATCGCACCTCAACCTTAGGGACCTTGCCTGTCGCAACGTTCTCTAGCTTTCGCTCGaa                                                                                                                            >  2:1118086/1‑139 (MQ=9)
      ggCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGT‑GGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAAAGCTCTCTCGCTGACGCTCGAg                                                                                                                            >  1:4073584/1‑140 (MQ=255)
      ggCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGT‑GGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGACGTTGCCTGAGGCAACGCTCTCTCGCTGACGCTCGaa                                                                                                                            >  1:6159291/1‑139 (MQ=255)
      ggCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGT‑GGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAg                                                                                                                            >  2:3556044/1‑140 (MQ=255)
      ggCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGT‑GGGGGAAGGATTACTAAGAGCTGCGCGCTTCTCCCTTCGGGGCGTTGCCTGCGGCACCGGTCTCTCGCGGGCGCTCGAg                                                                                                                            >  2:5684597/1‑140 (MQ=11)
       gCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGT‑GGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAgt                                                                                                                           >  1:2080900/1‑139 (MQ=255)
       gCAGAATATTTGAGTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGT‑GGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGc                                                                                                                           <  1:613112/140‑1 (MQ=255)
        cAGACTATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGT‑GGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAgtc                                                                                                                          <  2:1813412/140‑3 (MQ=11)
        cAGAATATTTGATTGCGGATTCGATTGAGATTTCAGGGACTTTTGAAATTGATGGTGGT‑GGGGGAAGGATTACTCCGCGCTGCGCGATTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAgtc                                                                                                                          <  1:2279432/140‑3 (MQ=11)
         agaagttttGATTGCGGAGTCGTTTGAGCATTCCGGGGCTTTTGAAAGTGAGGGTGGT‑GGGGGACGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCg                                                                                                                         <  2:1095249/134‑1 (MQ=14)
         aGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGT‑GGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCg                                                                                                                         <  1:5967578/140‑1 (MQ=255)
         aGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGACGGTGGT‑GGGGGATGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCg                                                                                                                         <  1:2158681/140‑1 (MQ=255)
         aGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGT‑GGGGGAAGGATTACTCAGCGCTTCGCTCGTCGCCCTTCGGGTCGTTGCCTGAGGCAACGATCTCTCGCTTTCGCTCGaatcg                                                                                                                         >  2:3035828/1‑136 (MQ=11)
           aaTATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGT‑GGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGaa                                                                                                                       >  2:1151251/1‑140 (MQ=255)
            atgtgtGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGTGGGTGGT‑GGGGGAAGGTTTACTCAGCGCGGCGCGCGTCGCCGTTCGGGGCGTGGCCTGCGGCAACGCTCTCTCGCTGGCGgtcgagtcgatg                                                                                                                      >  2:1193949/6‑138 (MQ=11)
                ttGATTGCGGATTCGGTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGT‑GGGGGAAGGATTCCTCAGCGCTGCGAGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTAGCGGGCGCGCGAGGCGTACCtgg                                                                                                                  >  2:689734/1‑138 (MQ=14)
                 tGATTGCGGATTCACTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGT‑GGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTTCCTGCGGCAACGCTCGATCGCTGGCGCACGAGTCGAACCttgg                                                                                                                 >  1:5649876/1‑138 (MQ=11)
                     tGCGGATTCGTTTGAGAATTCCGGGGCTTTTGCAAGTGATGGTGGT‑GGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGa                                                                                                             <  1:5805455/140‑1 (MQ=255)
                     tGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGT‑GGGGGAAGGATTACTCAGCGCTGCGCTCTTCGCCCTTCGGGTCGTTGCCTGAGGCAACGGTCTCTCGCTGTCGCTCGAATCGAACCTTAGTCGa                                                                                                             >  2:6395472/1‑140 (MQ=14)
                     tGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGT‑GGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGa                                                                                                             >  1:2565412/1‑140 (MQ=255)
                     tGCGGATTCGTTTGAGAATTCCGGGGCTTTGGAAAGTGATGGTGGT‑GGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGa                                                                                                             <  1:4761852/140‑1 (MQ=255)
                      gCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGT‑GGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGaa                                                                                                            <  2:1247502/140‑1 (MQ=255)
                      gCGGAGTCGTTAGAGAATTCCGTGTCTTTTGCAAGTGATGGTGGT‑GGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGaa                                                                                                            <  1:5255915/140‑1 (MQ=14)
                       cGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGT‑GGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAg                                                                                                           >  2:950358/1‑140 (MQ=255)
                       cGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGT‑GGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGATCTCTCGCTGACGCTCGAAACGAACCTTAGTCGAAg                                                                                                           >  2:3877047/1‑140 (MQ=14)
                        ggATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGT‑GGGGGAATGAGTACTAAACGCAGCGCGCTAAGCCCAACGGGTCGTTGCAGGAGGACACGCTCTCTCGCGGACGCTCGAGACGCACCGTAGGCGAAGc                                                                                                          >  2:3163620/1‑140 (MQ=9)
                         gATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGT‑GGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCt                                                                                                         <  1:3759878/140‑1 (MQ=255)
                            tCGCTTGAGAGTTCAGGGTCTTTTGATAGTGATGGTGGT‑GGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGCCGTTGCCTGCGGCAACGGTCTCTCGCTGTCGCTCGAGTCGAACCTTTGTCGAAGGTtct                                                                                                      <  2:4781958/140‑1 (MQ=11)
                             cgtttGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGT‑GGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTtctc                                                                                                     <  2:3946634/137‑1 (MQ=255)
                               tttGAGTATTCCGGGGCTTTTGAAAGTGATGGTGGT‑GGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCAt                                                                                                   <  2:5197258/139‑1 (MQ=255)
                               tttGAGAATTCCGGGTCTTTTGAAAGTGATGGTGGT‑GGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCAt                                                                                                   <  2:1006850/139‑1 (MQ=255)
                                 tGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGT‑GGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATcc                                                                                                 <  2:1400384/140‑1 (MQ=255)
                                    gaATTCCGGGGCTTTTGCAAGGGATGGGGTT‑GGGGGAAGGATTACTCAGCGCTGCGCGCTGCGCCCTTCGGGTCGGTGCCTGCGGCACCGCACTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCGTc                                                                                              <  2:236827/140‑1 (MQ=14)
                                    gaATTCCGGGGCTTTTGACAGTGATGGTGGT‑GGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGGTGCCTGCGGCAACGCTCTCTCGCGGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTc                                                                                              <  2:4035738/140‑1 (MQ=255)
                                      aTTCCGGGGCTTTTGAAAGTGATGGTGGT‑GGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTccc                                                                                            <  1:2131618/140‑1 (MQ=38)
                                         ccGGGGCTTTTGAAAGTGATGGTGGT‑GGGGGAAGGATTACTCAGCGCTGCGCGCTTCGNCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCGTAGTCGTAGGTTCTCATCCTTCCCCGc                                                                                         >  1:5686368/1‑140 (MQ=255)
                                          cGGGGCTTTTGAAAGTGATGGTGGT‑GGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCa                                                                                        <  1:4955343/140‑1 (MQ=25)
                                              gCTTTTGAAAGTGATGGTGGT‑GGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                    <  1:4339158/140‑1 (MQ=18)
                                              gCTTTTGAAAGTGATGGTGGT‑GGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                    <  2:3277567/140‑1 (MQ=18)
                                              gCTTTTGAAAGTGATGGTGGT‑GGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                    <  1:1707662/140‑1 (MQ=18)
                                              gCTTTTGAAAGTGATGGTGGT‑GGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                    <  2:2312946/140‑1 (MQ=18)
                                              gCTTTTGAAAGTGATGGTGGT‑GGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                    <  2:4211535/140‑1 (MQ=18)
                                              gCTTTTGAAAGTGATGGTGGT‑GGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                    <  1:5769169/140‑1 (MQ=18)
                                                ttttGAAAGTGATGGTGGT‑GGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                  <  2:4893719/140‑1 (MQ=17)
                                                ttttGAAAGTGATGGTGGT‑GGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                  <  2:4098139/140‑1 (MQ=17)
                                                ttttGAAAGTGATGGTGGT‑GGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                  <  1:2153171/140‑1 (MQ=17)
                                                ttttGAAAGTGATGGTGGT‑GGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                  <  1:928311/140‑1 (MQ=17)
                                                ttttGAAAGTGATGGTGGT‑GGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                  <  1:4514657/140‑1 (MQ=17)
                                                ttttGAAAGTGATGGTGGT‑GGGGGAAGCATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                  <  1:5820732/140‑1 (MQ=17)
                                                  ttGAAAGTGATGGTGGT‑GGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGa                                                                                <  1:950358/140‑1 (MQ=17)
                                                  ttGAAAGTGATGGTGGT‑GGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGa                                                                                <  1:1786549/140‑1 (MQ=17)
                                                                ggt‑ggGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTtc                                                                                                       >  2:4363237/1‑103 (MQ=17)
                                                                          aGGATTACTCAGCGCTTCGCGCTTCGCCCTTCGGGTCGTTGCATGCGGCAACGCTCTCTCGCTGGCGCAACAGACGAAACTTGGTCGAAGCTTCTCATCCTACCCCGCAGGGGCCGCATAATTAATTGCTGATTCGTTgg                                                         >  2:6164366/1‑140 (MQ=11)
                                                                          aGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCAGGGGCAGAATATTTAATTGCGGATTCGTTgg                                                         >  2:5436141/1‑140 (MQ=11)
                                                                          aGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCAAGGGCAGAATATTTAATTTCGGATTCGTTgg                                                         >  1:6344766/1‑140 (MQ=11)
                                                                            gttgaCTCAGCGGTGCTCGCTGCTCCCTTCGGCTAGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGa                                                       <  1:6263547/136‑1 (MQ=11)
                                                                            gATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGa                                                       <  2:4863129/140‑1 (MQ=255)
                                                                            gATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCGGCGGCAACGCTCTCTCGCTGGCGCGCGAGTCGAACCGTGGTCGAAGCGTCTCATCCGTCCCCGCCGGGGGAGTATATTTTATTGGGGATTCGTTGGGa                                                       >  1:3715518/1‑140 (MQ=11)
                                                                            gATTACTCAGCGCTGCGCGCTTCGCCCTGCGGGGCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCGCGACTCGAACCTTGGTCGAAGCTACTCAACCGTCCCCGCAAGGGCAGAATATTTAATAGCGCACTCGTTgggc                                                       >  2:5463887/1‑139 (MQ=11)
                                                                                aCTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTc                                                                                              >  2:5025125/1‑97 (MQ=18)
                                                                                aCTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTc                                                                                              <  1:5025125/97‑1 (MQ=18)
                                                                                    aGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAgg                                               >  2:6045231/1‑140 (MQ=255)
                                                                                     gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAggg                                              <  1:4380931/140‑1 (MQ=255)
                                                                                     gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAggg                                              <  1:592280/140‑1 (MQ=255)
                                                                                     gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAggg                                              <  1:1151753/140‑1 (MQ=255)
                                                                                     gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAggg                                              <  1:1151251/140‑1 (MQ=255)
                                                                                      cgcgGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCCCCGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGACGGTCAgggg                                             >  2:4383167/1‑139 (MQ=11)
                                                                                      cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGTCAGAATATTTAATTTCTGATTCGTTGGGAAGTTCAggta                                             >  2:5927629/1‑138 (MQ=14)
                                                                                      cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTAGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCATCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGAGTAGTTGGGACGTTCAGGGa                                             >  2:4169723/1‑140 (MQ=14)
                                                                                      cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCGGCGGCAACGCTCTCACGCGGTCGCTCGAGCCCAACCGTAGTCGAAGCTTCTCATCCTTCCCCCCATGGGCAGAAAATTTAAATGCGGATTCGTTGGGGAGTTCAGGGa                                             >  1:4632573/1‑140 (MQ=11)
                                                                                           cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACtttt                                        <  2:3573034/140‑1 (MQ=255)
                                                                                           cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTAATACTTACCCGCATGGGGAGAATATTTAATTTCGGTTTAGTTGGGTAGTTGAGGGACtttt                                        >  2:156858/1‑140 (MQ=11)
                                                                                           cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGcc                                                                                                                          <  1:2307108/58‑1 (MQ=35)
                                                                                           cgcgcTTCGCCCTTCGGGTCGTTGCCGGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCATGGTCGAAGCTTCTAATACTTCCCCCCCAGGGCCGAATATTTAATTGCGGGTTAGTTGGGGAGTTAAGGGTCgttt                                        >  1:1396766/1‑140 (MQ=2)
                                                                                           cgcgcTTCGCCCTGCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAATCTTCTCATCCGTCCCCGCATGGGCAGAAGATTTTATTGCGGATTCGTTGGGAAGTTGAGGGACgttg                                        >  2:2276291/1‑139 (MQ=11)
                                                                                               cTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGaaa                                    <  1:4116683/140‑1 (MQ=255)
                                                                                                  cGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTg                                 <  2:5161751/140‑1 (MQ=14)
                                                                                                   gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCTAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGA                                <  1:3491136‑M1/140‑1 (MQ=255)
                                                                                                   gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGA                                <  2:4580992‑M1/140‑1 (MQ=255)
                                                                                                   gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGA                                <  2:2733618‑M1/140‑1 (MQ=255)
                                                                                                   gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGACGAACCTTCGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTTATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGA                                <  1:2919564‑M1/140‑1 (MQ=255)
                                                                                                   gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCGGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGTTAGTTCAGGGACTTTTGAAAGTGA                                <  2:6262981‑M1/140‑1 (MQ=255)
                                                                                                     ccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCTAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAATGTGATG                              <  1:5469896‑M1/140‑1 (MQ=255)
                                                                                                     ccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATG                              <  2:4343137‑M1/140‑1 (MQ=255)
                                                                                                     ccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCGTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATG                              <  2:5498270‑M1/140‑1 (MQ=255)
                                                                                                          gggTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTTATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGT                         <  1:5198043‑M1/140‑1 (MQ=255)
                                                                                                          gggTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGT                         <  1:2457576‑M1/140‑1 (MQ=255)
                                                                                                          gggTCGTTGCCTGCGGCAACGCTCTCGCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCCGAATATTTGATTGCGGATTCGGTGGGTAGTTCAGGGAGATTTGGAAGTGAtggtggt                         >  2:2477582/1‑140 (MQ=11)
                                                                                                              cGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGG                     <  1:1327620‑M1/140‑1 (MQ=255)
                                                                                                                         gCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcga          <  1:3869638‑M1/140‑4 (MQ=255)
                                                                                                                               ctctctCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGACGTTCAGGGACTTTTGAAAGTGAGGGTGGTGGGGGAAGGATTcgaaccttc    >  2:2215983‑M1/1‑131 (MQ=255)
                                                                                                                               ctctctCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttc    >  1:2709541‑M1/1‑131 (MQ=255)
                                                                                                                                 ctctcGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAGTTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGACAGTGATGGTGGTGGGGGAAGGATTcgaaccttcga  >  2:6283784‑M1/1‑129 (MQ=255)
                                                                                                                                          |                                                                                                                                  
CGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGT‑GGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTG  >  NZ_CP025268/1292845‑1293112

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑