BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP025268	1,293,001	A→G	noncoding (36/132 nt)	CXP41_RS06835 ←	RtT sRNA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	1,293,001	0	A	G	99.5%	549.6 / NA	191	noncoding (36/132 nt)	CXP41_RS06835	RtT sRNA
Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (71/119); minor base C (1/0); total (72/119)
Fisher's exact test for biased strand distribution p-value = 3.77e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 191 total aligned reads displayed.

TTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCG  >  NZ_CP025268/1292865‑1293133

 tGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCTCTTCGCCCTTCGGGTCGTTGCCTGAGGCAACGGTCTCTCGCTGTCGCTCGAATCGAACCTTAGTCGa                                                                                                                                  >  2:6395472/1‑140 (MQ=14)

 tGCGGATTCGTTTGAGAATTCCGGGGCTTTGGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGa                                                                                                                                  <  1:4761852/140‑1 (MQ=255)

  gCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGaa                                                                                                                                 <  1:5767952/140‑1 (MQ=255)

   cGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAg                                                                                                                                >  2:950358/1‑140 (MQ=255)

   cGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAg                                                                                                                                <  2:5448609/140‑1 (MQ=255)

     gATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCt                                                                                                                              <  1:3759878/140‑1 (MQ=255)

        tCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGGGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTtct                                                                                                                           <  1:6109822/140‑1 (MQ=255)

        tCGCTTGAGAGTTCAGGGTCTTTTGATAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGCCGTTGCCTGCGGCAACGGTCTCTCGCTGTCGCTCGAGTCGAACCTTTGTCGAAGGTtct                                                                                                                           <  2:4781958/140‑1 (MQ=11)

         cgtttGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTtctc                                                                                                                          <  2:3946634/137‑1 (MQ=255)

           tttGAGTATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCAt                                                                                                                        <  2:5197258/139‑1 (MQ=255)

           tttGAGAATTCCGGGTCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCAt                                                                                                                        <  2:1006850/139‑1 (MQ=255)

           tttGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCAt                                                                                                                        <  2:4212882/139‑1 (MQ=255)

           tttGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCAt                                                                                                                        <  1:3749871/139‑1 (MQ=255)

             tGAGAATTTCGGGTCTTTTGTAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATcc                                                                                                                      <  2:4891508/140‑1 (MQ=255)

                gaATTCCGGGGCTTTTGCAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTc                                                                                                                   <  2:4035796/140‑1 (MQ=255)

                gaATTCCGGGGCTTTTGCAAGGGATGGGGTTGGGGGAAGGATTACTCAGCGCTGCGCGCTGCGCCCTTCGGGTCGGTGCCTGCGGCACCGCACTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCGTc                                                                                                                   <  2:236827/140‑1 (MQ=14)

                  aTTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTccc                                                                                                                 <  1:2131618/140‑1 (MQ=38)

                      cGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCa                                                                                                             <  1:4955343/140‑1 (MQ=25)

                      cGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCa                                                                                                             <  1:2501480/140‑1 (MQ=25)

                          gCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                                         <  2:3277567/140‑1 (MQ=18)

                          gCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                                         <  1:5839444/140‑1 (MQ=18)

                          gCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                                         <  1:1516392/140‑1 (MQ=18)

                          gCTTATGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                                         <  1:5798472/140‑1 (MQ=18)

                            ttttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                                       <  1:928311/140‑1 (MQ=17)

                            ttttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                                       <  2:4098139/140‑1 (MQ=17)

                            ttttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                                       <  1:2153171/140‑1 (MQ=17)

                            ttttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                                       <  1:4514657/140‑1 (MQ=17)

                              ttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGa                                                                                                     <  1:950358/140‑1 (MQ=17)

                              ttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGa                                                                                                     <  1:1786549/140‑1 (MQ=17)

                                     tGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTTCCTGCGGCAACGCTCTCTCGCAGACGCTCGAGCCGAACCTTAGTCGAAGCTTCACATCCTTCCCCGCATGGGCAGAATATTTa                                                                                              >  2:2919564/1‑140 (MQ=255)

                                         ggtggtggGGGAAGGATTACTCAGCGATTCTCGCTTCTCCCTTCCGGTCGTTGCATGCGGCAACGCACTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTGTCATCCTTCCCCGCGTGGGCAGACTAtttgagtg                                                                                          >  2:5691041/1‑135 (MQ=11)

                                            ggtggGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTtc                                                                                                                            <  1:4363237/103‑1 (MQ=17)

                                                     aGGATTACTCAGCGCTTCGCGCTTCGCCCTTCGGGTCGTTGCATGCGGCAACGCTCTCTCGCTGGCGCAACAGACGAAACTTGGTCGAAGCTTCTCATCCTACCCCGCAGGGGCCGCATAATTAATTGCTGATTCGTTgg                                                                              >  2:6164366/1‑140 (MQ=11)

                                                     aGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGTCGCACCTTGGTCGAAGCTTATCATCCGTCCCCGCATGGGGAGATTATTTACTTGCGGATTCGTggg                                                                              >  2:418924/1‑140 (MQ=11)

                                                     aGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCCGAATATTTAATTGCGGATTCGTTgg                                                                              >  2:2564057/1‑140 (MQ=11)

                                                           aCTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTc                                                                                                                   <  1:5025125/97‑1 (MQ=18)

                                                           aCTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTc                                                                                                                   >  2:5025125/1‑97 (MQ=18)

                                                               aGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAgg                                                                    >  2:6045231/1‑140 (MQ=255)

                                                                gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAggg                                                                   <  1:1151251/140‑1 (MQ=255)

                                                                 cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGTCAGAATATTTAATTTCTGATTCGTTGGGAAGTTCAggta                                                                  >  2:5927629/1‑138 (MQ=14)

                                                                 cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCCTGGGCAGAATATTTAATTGCGGATTCGCTGGTGAGTTCAGGGa                                                                  >  2:1250277/1‑140 (MQ=11)

                                                                 cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCGGCGGCAACGCTCTCTCGCTGGCGCTCGTGTCGAACCTTGGTCGAAGCTTCTAAACCTTCCCCCCCTGGGCAGAATCTTTAATTTCGGGTTGGGTTGGAAGTTAAGGGa                                                                  >  1:2388238/1‑140 (MQ=11)

                                                                 cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCGGCGGCAACGCTCTCACGCGGTCGCTCGAGCCCAACCGTAGTCGAAGCTTCTCATCCTTCCCCCCATGGGCAGAAAATTTAAATGCGGATTCGTTGGGGAGTTCAGGGa                                                                  >  1:4632573/1‑140 (MQ=11)

                                                                 cgcTGCGCGCTTCGCCCATCGGGTCGTTGCCTGCGGCAACGCTCTCACGCAGGCGCTCGAGTCGAACCTTGGTGGAAGCTTCTCATACGTCCCCGCATGGGCAGAATATTGAATTGGGGAATGGTGGGGAAGGTCAgggc                                                                  >  2:4383113/1‑139 (MQ=11)

                                                                  gcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCACCGCTCTCTCGCTGGCGCTCAAGTCGAACCGTGGTCGAAGCTTCTAATCCTTCCCCGCCTGGGCCGGATATTTTATTTCGGTTTGGTTGGGTAGTTAAggggc                                                                 >  1:1585148/1‑138 (MQ=11)

                                                                   cTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCatttttc                                                                >  2:3176402/1‑134 (MQ=14)

                                                                      cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACtttt                                                             <  2:3573034/140‑1 (MQ=255)

                                                                      cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACtttt                                                             >  2:5469896/1‑140 (MQ=255)

                                                                      cgcgcTTCGCCCTTCGGGTCGTTGCCGGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCATGGTCGAAGCTTCTAATACTTCCCCCCCAGGGCCGAATATTTAATTGCGGGTTAGTTGGGGAGTTAAGGGTCgttt                                                             >  1:1396766/1‑140 (MQ=2)

                                                                      cgcgcTTCGCCCTGCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAATCTTCTCATCCGTCCCCGCATGGGCAGAAGATTTTATTGCGGATTCGTTGGGAAGTTGAGGGACgttg                                                             >  2:2276291/1‑139 (MQ=11)

                                                                       gcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCGTATCATCCTTACCCGCATGGGCAGAATATTTAATTGCGGATTAGTTGGGAAGTTCAGGGACTTTTg                                                            >  2:1623909/1‑140 (MQ=14)

                                                                         gcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGaa                                                          <  1:4089480/140‑1 (MQ=255)

                                                                         gcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGaa                                                          <  2:1117515/140‑1 (MQ=255)

                                                                             cGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTg                                                      <  1:2897704/140‑1 (MQ=255)

                                                                             cGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTg                                                      <  2:5161751/140‑1 (MQ=14)

                                                                              gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCTAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGA                                                     <  1:3491136‑M1/140‑1 (MQ=255)

                                                                              gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGA                                                     <  2:4580992‑M1/140‑1 (MQ=255)

                                                                                ccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCTAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAATGTGATG                                                   <  1:5469896‑M1/140‑1 (MQ=255)

                                                                                ccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATG                                                   <  2:4343137‑M1/140‑1 (MQ=255)

                                                                                ccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCGTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATG                                                   <  2:5498270‑M1/140‑1 (MQ=255)

                                                                                     gggTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTTATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGT                                              <  1:5198043‑M1/140‑1 (MQ=255)

                                                                                         cGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGG                                          <  1:1327620‑M1/140‑1 (MQ=255)

                                                                                             gCCTGCGGCAACGCTCTCTCGCTGGCGCNCGAGACGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAG                                      <  1:5671094‑M1/140‑1 (MQ=255)

                                                                                                 gCGGCACCGCTCTCTCGCAGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCATCCCCGCCTGGGCCGAATATTGAAGTGCGGCTTCGGTGGGAAGTTCAGGGACTTGTGGACGGGATGGTGGGGGGGGAAGGagt                                  >  2:3655677/1‑138 (MQ=255)

                                                                                                 gCGGCAACGCGCTCTCGCTGGCGCTCGAGTCGAACCTTTGTCGAAGCGTCTCATCCTTCCCCGCATGGGGAGTATATTTAATTGCGGATTGGTTGGGAAGGTCAGGGACGTTTGTAAGTGATGGTGGTGGGGGTAGGAtt                                  >  2:1514970/1‑140 (MQ=14)

                                                                                                    gCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcga                               <  1:3869638‑M1/140‑4 (MQ=255)

                                                                                                        cGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGGTCCGGGACTTTTGTAAGGGATGGTGGTGGGGGAAGGATTcgaacct                           >  1:2225196‑M1/1‑133 (MQ=255)

                                                                                                        cGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCATCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGGTGGTGGTGGGGGAAGGATTcgaacct                           >  1:4315647‑M1/1‑133 (MQ=255)

                                                                                                          ctctctCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGACGTTCAGGGACTTTTGAAAGTGAGGGTGGTGGGGGAAGGATTcgaaccttc                         >  2:2215983‑M1/1‑131 (MQ=255)

                                                                                                          ctctctCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttc                         >  1:2709541‑M1/1‑131 (MQ=255)

                                                                                                            ctctcGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAGTTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGACAGTGATGGTGGTGGGGGAAGGATTcgaaccttcga                       >  2:6283784‑M1/1‑129 (MQ=255)

                                                                                                                   tggcgctCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgat                <  2:311400‑M1/137‑19 (MQ=255)

                                                                                                                   tggcgctCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgat                >  2:2114016‑M1/4‑122 (MQ=255)

                                                                                                                    ggcgcTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatg               >  1:2465462‑M1/3‑121 (MQ=255)

                                                                                                                    ggcgcTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAA                                       >  1:6192736‑M1/3‑116 (MQ=255)

                                                                                                                    ggcgcTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATAGTTTATTGCGGATTCGTTGGGAAGTGCAGGGACTTTTGAAAGGGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatg               >  1:580663‑M1/3‑121 (MQ=255)

                                                                                                                    ggcgcTCGAGTCGAACCTTGGTCGAAGCATCTCATCCTTCCCCGCATGGGCAGAATATTTACTTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAATTGTTGGTGGTGGGGGAAGGATTagaaccgtcgaagtcgatg               >  1:3664365‑M1/3‑121 (MQ=255)

                                                                                                                    ggcGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTAATTGCGGAt                                                                                     >  2:3226334/3‑70 (MQ=11)

                                                                                                                    ggcGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTAATTGCGGAt                                                                                     <  1:3226334/68‑1 (MQ=11)

                                                                                                                     gcgCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCCGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatga              >  1:6357051‑M1/2‑120 (MQ=255)

                                                                                                                     gcGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGa                                                                            <  1:6263548/77‑1 (MQ=14)

                                                                                                                     gcGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGa                                                                            >  2:6263547/2‑78 (MQ=14)

                                                                                                                       gCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTCATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacg            >  1:5371760‑M1/1‑118 (MQ=255)

                                                                                                                       gCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCgg                                                                                       <  2:5232075/65‑1 (MQ=11)

                                                                                                                       gCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTAGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacg            >  2:6253251‑M1/1‑118 (MQ=255)

                                                                                                                       gCTCGAGACGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGTTAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTagaaccatctaagacgatcacg            >  2:3905595‑M1/1‑118 (MQ=255)

                                                                                                                       gCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTAATTGCgg                                                                                       >  1:5232075/1‑65 (MQ=11)

                                                                                                                        cTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTTATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacgg           <  1:2271038‑M1/140‑24 (MQ=255)

                                                                                                                        cTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGTGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacgg           <  2:4021359‑M1/140‑24 (MQ=255)

                                                                                                                         tCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggc          >  1:802906‑M1/1‑116 (MQ=255)

                                                                                                                          ctagtcgaaccTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggca         <  2:1585148‑M1/135‑26 (MQ=255)

                                                                                                                          ctagtcgaaccTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggca         <  1:6220953‑M1/135‑26 (MQ=255)

                                                                                                                          ccagtcgaaccTTGGACGAAGCTTCTCCTCCTTCCCCGACTGGGCAGAATATTTAATTGCGGAGTCGTTGGTAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggca         <  2:41394‑M1/135‑26 (MQ=255)

                                                                                                                          cGAGTCGTACCTTGGTCGAAGCTTCTCCTCCGTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggca         <  1:2076582‑M1/140‑26 (MQ=255)

                                                                                                                          cGAGTCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggca         <  1:1250277‑M1/140‑26 (MQ=255)

                                                                                                                          cGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggca         <  2:3291862‑M1/140‑26 (MQ=255)

                                                                                                                          cGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggca         <  1:3064812‑M1/140‑26 (MQ=255)

                                                                                                                          cGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggca         <  1:422559‑M1/140‑26 (MQ=255)

                                                                                                                             ttcgaACCTTGGTCGAAGCGTCTCATCCGTCCCCGCTTGGGCAGAATTTTTAATTGCGGAGTCGTTGGGTAGTTCAGGGACTTTAGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagat      <  2:6111128‑M1/138‑29 (MQ=255)

                                                                                                                                 aaCCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttac  <  1:1111958‑M1/140‑33 (MQ=255)

TTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCG  >  NZ_CP025268/1292865‑1293133

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`