BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP025268	1,293,179	A→G	noncoding (36/132 nt)	CXP41_RS06840 ←	RtT sRNA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	1,293,179	0	A	G	98.1%	266.3 / NA	107	noncoding (36/132 nt)	CXP41_RS06840	RtT sRNA
Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (29/75); minor base T (1/1); total (30/77)
Fisher's exact test for biased strand distribution p-value = 4.88e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 107 total aligned reads displayed.

TTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACA  >  NZ_CP025268/1293054‑1293312

cttgagaGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCAt                                                                                                                         <  2:2080900/134‑1 (MQ=11)

    agaGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCCGCAACGCTCTCTCGCTGGCGCGCGCGTCGAACCAGGGTCGAAGCTTCTCATccgt                                                                                                                     >  2:1091023/3‑138 (MQ=11)

       gTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTccc                                                                                                                  >  2:3100609/1‑140 (MQ=255)

         tCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCGTGGTCGAAGCTTCTCATCCTTccccc                                                                                                                >  1:6094276/1‑139 (MQ=255)

          cAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTc                                                                                                                    >  2:4352990/1‑135 (MQ=255)

          cAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTc                                                                                                                    <  1:4352990/135‑1 (MQ=255)

           aGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCa                                                                                                              >  1:760151/1‑140 (MQ=255)

           aGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCGGGCGCTCGAGTCGAACCGTGGTCGAAGGTGCTCAACCTTCACAGCa                                                                                                              >  1:4823836/1‑140 (MQ=11)

            tgtaCTTTAGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCAGCCTTCCCCGCAt                                                                                                             <  1:2351128/137‑1 (MQ=11)

               tcTTTTGAAAGTGATGGTGGTGGGGGAATGATTTATCATCGCTGCGCGCTTCGACCTTATGTTCTTTGGCTTCGTCTTCTGTGTCTGGCTGGATATAGAGTCTAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                                          <  2:5832764/139‑1 (MQ=2)

                 ttttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                                        <  2:3342271/140‑1 (MQ=12)

                 ttttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                                        <  2:5322366/140‑1 (MQ=12)

                 ttttGAAAGTGATGGTGGCGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGATTCGAACCTTGGTCGACGCTTCTCATCCTTCCCCGCATGGGCa                                                                                                        <  1:2001900/140‑1 (MQ=11)

                 ttgtgccaGTGATGGGGGTGGGGGAAGGATTACTCACCGCTGCGCGCTTCGCCCTTCGGGTCGTGGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                                        <  1:3148332/133‑1 (MQ=11)

                   ttGGAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTGGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGa                                                                                                      <  2:2044058/140‑1 (MQ=11)

                   ttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGa                                                                                                      <  2:1808398/140‑1 (MQ=12)

                   tagAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCTCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGa                                                                                                      <  1:4663234/138‑1 (MQ=11)

                         gTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCAACCTTCCCCGCATGGGCCGAATAttt                                                                                                >  2:2992362/1‑140 (MQ=11)

                                                aCTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTAGAAGCTTATCATCCTTCCCCGCATGGGCAGAATATTTGTTTGCGGATTCGGTTGAGAGtt                                                                         >  2:2416081/1‑140 (MQ=11)

                                                aCTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCATAGTCGAAGCTTCTCATCCTTCCCCCCAAGGGCAGAATAATTTATTGCGGATTCGCTTGAGAGtt                                                                         >  2:2416113/1‑140 (MQ=11)

                                                   cAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAg                                                                      >  2:1229413/1‑140 (MQ=11)

                                                    aGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAgg                                                                     <  1:3542586/140‑1 (MQ=21)

                                                     gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAggg                                                                    <  2:3786550/140‑1 (MQ=21)

                                                     gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAggg                                                                    <  1:1886620/140‑1 (MQ=21)

                                                     gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGCTCAggg                                                                    <  1:2765907/140‑1 (MQ=255)

                                                      cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCCACGCTCTCTAGCAGACGCTCCAGCCGAACCGTAGTCGAAGCTTCTCATCCTGCCCCGCGTGGGCCGATTATTTGATTGGGGATTGGGGTGAGAGttgggggg                                                                   >  2:1965998/1‑134 (MQ=11)

                                                      cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTTCGGATTCTATTGAGAGTTAAgggg                                                                   >  1:5901388/1‑139 (MQ=11)

                                                      cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTAGCTGGAGAGTTCAGGGa                                                                   >  2:1062893/1‑140 (MQ=255)

                                                       gcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCCACGCTCTCTCGCGGGCGCGCGAGCCGAACCTTAGTCGAAGCTTCGCCTCCGTCCCCGCCTGGGCAGAATATGTGATTTCGGAGTCGCGTGAGAGGTGAggggg                                                                  >  1:4560148/1‑138 (MQ=11)

                                                           cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCACCGCTCTCTCGCTGCCGCTCGGGCCGAACCTTAGTCGAAGCTTCTCATCCGTCCCCCCAGGGGCTGAATGTTTGATTGCGGGTGCGGTGGAGAGGTCAGGGGCgttt                                                              >  1:6332744/1‑140 (MQ=11)

                                                           cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCCTGGGGAGACTATTTGATTGGGGATTGGCTTGGGAGTTCTGGGTCtttt                                                              >  1:3662125/1‑140 (MQ=11)

                                                           cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCGCTCGCGCTGTCGCTCGAGCCGAACCGTGGTCGAAGCTTCTCATCCTTCCCCGCAGGGGCCGAATAGTTGATTGCGGATTCGCGTGTGAGGTCAGGGACgttt                                                              >  1:5462603/1‑140 (MQ=11)

                                                           cgcgcTTCGCCCTTCGGGTCGTTGCCGGCGGCAACGCGCTCTCGCTGGCGCTCGAGCCGAACCGTAGGAGCATCATCTAATCCGTCCCCGCAAGGGCCGAATATTAGATTTCGGATTAGGTGGGGAGTTCAGGGACtttt                                                              >  1:5766753/1‑140 (MQ=2)

                                                              gcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATGCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGaa                                                           <  1:3688258/140‑1 (MQ=255)

                                                              gcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGaa                                                           <  1:3221571/140‑1 (MQ=255)

                                                              gcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGaa                                                           <  1:3593915/140‑1 (MQ=255)

                                                              gcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGaa                                                           <  1:56771/140‑1 (MQ=255)

                                                              gcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGaa                                                           <  2:2565412/140‑1 (MQ=255)

                                                                ttCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGTACCATTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAg                                                         <  1:1860798/140‑1 (MQ=11)

                                                                ttCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAg                                                         <  1:2214825/140‑1 (MQ=255)

                                                                ttCGCCCTTCGGGTCGTGGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGCCGAACCGTAGTCGTAGCTTCTCATCCTTCCCCGCAGGGGCAGAAAATGTGATTGCGGAGTCGCGTGAGCGGGCAGGGACTGTTGAAAg                                                         >  1:1827203/1‑140 (MQ=11)

                                                                 tCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGTCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGt                                                        <  2:1444250/140‑1 (MQ=255)

                                                                  cGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCTAGCCGAACCTTCGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTg                                                       <  2:3830017/140‑1 (MQ=255)

                                                                   gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGa                                                      <  1:259806/140‑1 (MQ=255)

                                                                   gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGa                                                      <  2:1057599/140‑1 (MQ=255)

                                                                   gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATAATTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGa                                                      >  2:5640797/1‑140 (MQ=255)

                                                                   gCCCTTCGGGTCGTTGCCAGCGGCAACGCTCTCTCGCTGACGCGCGAGCCGAACCTTAGTCGACGCTTCTCATCCTTCCCCGCATGGGCAGACTATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGa                                                      <  2:2425597/140‑1 (MQ=11)

                                                                    cccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCTAGCCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAt                                                     <  1:1155833/140‑1 (MQ=255)

                                                                    cccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAt                                                     <  1:5321124/140‑1 (MQ=255)

                                                                     ccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtg                                                    <  2:310819/140‑1 (MQ=255)

                                                                      cTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtgg                                                   <  1:1072520/140‑1 (MQ=255)

                                                                      cTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAAACTTCGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGATTATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtgg                                                   <  1:2630974/140‑1 (MQ=11)

                                                                        tCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTTATTGCGGATTCGCTTGTGAGTTCAGGGACTTTTGAAAGTGAtggtg                                                 >  2:422559/1‑140 (MQ=255)

                                                                        tCGGGTCGTTGCCTGCGGCAACGCTCTCACGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCGTCCCCGCATGGGCAGAAGATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACGTTTGAAAGTGAtggtg                                                 >  1:1813412/1‑140 (MQ=11)

                                                                         cGGTTCGTTGCCTGCGGCAACGCTCTATCGCTTACTCTCTATCCGAACCTTAGTCGAAGCTTCTCATCCGTCCCCGCATGGGCATATTTTTTGATTGCGGATTCGCTTGAGTGTTCAGGTACTTTTGAAAGTGAtggtgg                                                <  1:6086421/140‑1 (MQ=11)

                                                                         cGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGCCTCTCGAGCCGAACCTACGTCGAAGCTTATCATCCTTCCCCGCATGGGCAGCATAAGTGCATGCGGATTCGATTGAGAGTTCAGGGACAAATGAAACTGAtggtgg                                                <  2:2569918/140‑1 (MQ=11)

                                                                         cGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCCCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtgg                                                <  1:4121478/140‑1 (MQ=255)

                                                                          gggTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGATCCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtggt                                               <  1:3281814/140‑1 (MQ=255)

                                                                          gggTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtggt                                               <  1:3586320/140‑1 (MQ=255)

                                                                          gggTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtggt                                               <  1:5860502/140‑1 (MQ=255)

                                                                          gggTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTAGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtggt                                               <  1:2911126/140‑1 (MQ=255)

                                                                          gggTCGTGGCCTGCGGCAACGCTCTCTCGCTGACGATCGCGCCGACCCTTGGTCGAAGCGTCTCCTCCGTCCCCGCTTGGGCAGATTTTTTGATTGCGGATTCGCTTGAGATTTCTGGGACTTTTGAAAGTGAtggtggt                                               <  1:4207255/140‑1 (MQ=11)

                                                                           ggTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtggtg                                              <  1:3806488/140‑1 (MQ=255)

                                                                           ggTCGTTGCCTGCGGCAACGCTCTCCCGCTGCCGCTCGAGCCGATCCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtggtg                                              <  2:4603044/140‑1 (MQ=255)

                                                                            gTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtggtgg                                             >  2:3930398/1‑140 (MQ=255)

                                                                            gTCGTTGCCTGCGGCAACGCTCTCTAGCTGGCGCTCAAGTAGAACCTTGGTCGAATCTTCTCAAACAACCCCGCGGTGGCCGAAAATGTGATTGCGGATTCGGTTGTGATTTCAGGGTCTTTTTAAAGTGTtgggggtgg                                             >  2:2279432/1‑140 (MQ=2)

                                                                             tCGTTGCCTGCGGCTACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGATTATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggg                                            <  2:3994542/140‑1 (MQ=255)

                                                                             tCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGCCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggg                                            <  2:3746328/140‑1 (MQ=255)

                                                                             tCGTTGCCTGCGGCAACGCTCTCTCGCTGCCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATAATTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggg                                            <  2:3746355/140‑1 (MQ=255)

                                                                             tCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggg                                            <  2:2614456/140‑1 (MQ=255)

                                                                             tCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggg                                            <  1:4378878/140‑1 (MQ=255)

                                                                               ggtGCCTGCGGCAACGCACTCTCGCTGACGCTCCAGCCGAACCTTCGTCGAAGCTTCTCATCCGTCCCCGCATGGGCAGAATTTTTGATTGCGGATTCGCTTGAGAGTTCAGTGAATTTTGAAAGTGATGGTGGTggggg                                          <  2:5604178/138‑1 (MQ=11)

                                                                               gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGCGCCGAACCTTAGTCGAAGCTTCTCCTCCTTCCCCGCTTGGGCAGAATTTTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                                          <  2:4009775/140‑1 (MQ=11)

                                                                               gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGATTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                                          <  1:799864/140‑1 (MQ=255)

                                                                               gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                                          <  1:3338838/140‑1 (MQ=255)

                                                                               gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                                          <  2:5892747/140‑1 (MQ=255)

                                                                               gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGAGTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                                          <  2:2113520/140‑1 (MQ=255)

                                                                               gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATAGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                                          <  2:4973948/140‑1 (MQ=255)

                                                                               gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCGTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                                          <  1:1970662/140‑1 (MQ=255)

                                                                               gTTGCCCGCGGCACCGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                                          <  2:3387303/140‑1 (MQ=255)

                                                                                 tGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCGTAGTCGAAGCTTCTCATCCATCCCCGCAAGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTGAGGGACTTTTTAAAGTGATGGTGGTGGGGGaa                                        >  1:6102738/1‑140 (MQ=11)

                                                                                 tGCCTGCGGCAACGCTCACTCCCTTACGCGCGAGCCGAAACTTATTCGAAACATCTAATACAACCCCGCATGGGCAGAATATTTTATTTCGGTTTCGCTTGAGAGTTCAGGGACTTTTTTAATTGATGGTGGTgggggga                                        >  2:1884232/1‑138 (MQ=2)

                                                                                  gCCTGCGGCAACGCTCTCTCGCTGACGCTCTATCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTAGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAg                                       <  1:5877511/140‑1 (MQ=11)

                                                                                    cTGCGGCAACGCTCTCTCGCTGTCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGa                                     <  1:2959584/140‑1 (MQ=255)

                                                                                    cTGCGGCAACGCTCTCTCGCTGTCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGa                                     <  1:1648689/140‑1 (MQ=255)

                                                                                    cTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGATTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGa                                     <  1:1229413/140‑1 (MQ=11)

                                                                                    cTGCGGCAACGCTCTCTCGCTGCCGCTCGAGCCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCATGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGa                                     <  1:1428667/140‑1 (MQ=255)

                                                                                    cTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTATTCGAAGCTTCTCATCCTTCCCCGCATGGGCATAATATTTGATTGCGGATTCGATTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGa                                     <  2:277689/140‑1 (MQ=255)

                                                                                    cTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGa                                     <  1:3525406/140‑1 (MQ=255)

                                                                                    cTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGa                                     <  1:3525374/140‑1 (MQ=255)

                                                                                    cTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGa                                     <  1:1648719/140‑1 (MQ=255)

                                                                                    cTGCGGCAACGCTCTCTCGCGGCCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGa                                     <  1:1978069/140‑1 (MQ=255)

                                                                                        ggCAACGCTCTCTCGCTGACGCTCGCGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAttac                                 <  2:6189726/140‑3 (MQ=255)

                                                                                         gCAACGCTCTCTCGCTGGCGCTCTAGTCGCACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATATGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAttact                                <  2:1755771/140‑4 (MQ=11)

                                                                                         gCAACGCTCTCTCGCTGACGCTCGCGCCGAACCTTAGACGAAGCTTCTCCTCCTTCCCCGCATGGGCAGAATATTTGTTTGCGTATTCTCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAttact                                <  1:2882472/140‑4 (MQ=11)

                                                                                         gCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTTCTCGAAGCGTCTCATCCGTCCCCGCCTGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCCGGGACTTTTGCAAGTGATGGTGGTGGGGGAAGGAttact                                <  2:5882160/140‑4 (MQ=1)

                                                                                         gCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAttact                                <  1:6295073/140‑4 (MQ=255)

                                                                                            aCGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGTGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAttactccg                             >  2:5066583/1‑134 (MQ=11)

                                                                                             cGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGTGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTAGAAcgt                            >  2:1285520/1‑138 (MQ=11)

                                                                                                         ggCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTGGGGAATTCAGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAAACATCGAAGACGATg                >  1:3045649/1‑140 (MQ=11)

TTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACA  >  NZ_CP025268/1293054‑1293312

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`