| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 1,762,540 | T→C | pseudogene (1000/1000 nt) | ldtE ← | L,D‑transpeptidase LdtE |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 1,762,540 | 0 | T | C | 99.4% | 1094.6 / NA | 318 | pseudogene (1000/1000 nt) | ldtE | L,D‑transpeptidase LdtE |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (166/150); minor base A (0/2); total (166/152) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.28e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 318 total aligned reads displayed.
TCAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGTTACTGCGTCACGCGTAACATATTCCCTTGC‑‑‑‑‑TTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGC > NZ_CP025268/1762404‑1762669 | cAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACt > 2:2826180/1‑140 (MQ=255) cAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACt > 1:4289245/1‑140 (MQ=255) aGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTACTAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTg > 1:5321414/1‑140 (MQ=255) ctAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCAc > 1:5591726/1‑140 (MQ=255) aaGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCAcgcg < 1:180421/140‑1 (MQ=255) aGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGt < 2:5394260/140‑1 (MQ=255) aGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGt < 1:1398086/140‑1 (MQ=255) aTGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGCAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTaa > 1:260049/1‑140 (MQ=255) gACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACa > 1:353650/1‑140 (MQ=255) aCGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACat < 1:444093/140‑1 (MQ=255) cGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTACTAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACata > 1:503433/1‑140 (MQ=255) cGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTCACata > 1:669044/1‑140 (MQ=255) cGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACata > 1:1516908/1‑140 (MQ=255) cGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACata > 2:3829144/1‑140 (MQ=255) cTCGTGCTAACCAGCGTCTGGACAACCTGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTCCCGCTACTGCGTCACGCGTAACATATTccc > 2:4873675/1‑140 (MQ=255) cTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTccc > 2:3590295/1‑140 (MQ=255) cTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTccc < 1:5455224/140‑1 (MQ=255) cTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTccc < 2:3872428/140‑1 (MQ=255) cTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTccc > 1:1204065/1‑140 (MQ=255) cTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAAGCCCGCAAGTAATAGTACCTGTGAAGTGAACAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGACTGCCGGGTACCGCTACTGCGTCACGCGAAACAGAGTccc < 2:81607/140‑1 (MQ=255) tGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGc < 1:4544964/140‑1 (MQ=255) gCTAACCAGCGTCTGGACAACATTGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑ATTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCt < 2:1227106‑M1/140‑2 (MQ=255) gCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCt > 1:2676173‑M1/1‑139 (MQ=255) ccAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggt > 1:4095901‑M1/1‑134 (MQ=255) ccAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggt > 1:2097041‑M1/1‑134 (MQ=255) gCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttca < 1:101090‑M1/140‑10 (MQ=255) gCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttca > 1:2340408‑M1/1‑131 (MQ=255) cGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCactggttcac > 1:4366584‑M1/1‑130 (MQ=255) cGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCGGTGAAGTGAATATTGGCGCACGTTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTCCTGCGTCACGCGTAACTTAGTCCCTTGCtctggttcac > 2:6207045‑M1/1‑130 (MQ=255) acaacaTGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctg > 1:552979‑M1/1‑123 (MQ=255) acaTGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgc > 1:587065‑M1/1‑120 (MQ=255) acaTGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTG‑AAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgct < 1:1758981‑M1/140‑22 (MQ=255) caTGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgct > 1:908554‑M1/1‑119 (MQ=255) caTGGCTACTAAATACCGCAAGTAATAGTACCTGGGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgct > 2:4352785‑M1/1‑119 (MQ=255) tGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgctga < 2:5741692‑M1/140‑24 (MQ=255) ggCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgctgac > 2:3177023‑M1/1‑116 (MQ=255) ggCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgctgac > 2:2472870‑M1/1‑116 (MQ=255) gCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgctgact < 1:2954955‑M1/140‑26 (MQ=255) gCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATAGTCCCTTGCtctggttcaccattctgcgctgact < 2:1641090‑M1/140‑26 (MQ=255) aaaTACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgctgactctactg > 2:3442981‑M1/1‑109 (MQ=255) aTACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgctgactctactgaa > 2:1296399‑M1/1‑107 (MQ=255) tACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgctgactctactgaag > 2:6049750‑M1/1‑106 (MQ=255) ccGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATAGTCCCTTGCtctggttcaccattctgcgctgactctactgaaggc < 2:5025928‑M1/140‑37 (MQ=255) ccGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACAGTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgctgactctactgaaggc > 2:1674318‑M1/1‑104 (MQ=255) cGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgctgactctactgaaggcg > 1:6262871‑M1/1‑103 (MQ=255) cGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgctgactctactgaaggcg > 1:3391842‑M1/1‑103 (MQ=255) cAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCTTCACGCGTAACATATTCACTTGCtctggttcaccattctgcgctgactctactgaaggcgca > 2:628350‑M1/1‑101 (MQ=255) cAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgctgactctactgaaggcgca > 1:572540‑M1/1‑101 (MQ=255) cAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgctgactctactgaaggcgca < 1:3979541‑M1/140‑40 (MQ=255) cAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgctgactctactgaaggcgca > 1:4588567‑M1/1‑101 (MQ=255) cAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgctgactctactgaaggcgca > 1:2164853‑M1/1‑101 (MQ=255) cAAGTAATAGTACCGGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTCACATATTCCCTTGCtctggttcaccattctgcgctgactctacggaaggcgca > 2:3637706‑M1/1‑101 (MQ=255) gTAATACGACCTGTGAAGTTAAAAATGGCGCACCTTGTGCGCCA‑‑TTTTTTTTGACTGCCGTTTACCGCTACTGCGTCACGCCTAACATATTCCCTTGCtctggttcaccattctgcgctgactctactgaaggcgcattg > 2:5519869‑M1/1‑98 (MQ=255) aTAGTACCTGTGAAGTGAAAAATGGCGCACATTGGGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgctgactctactgaaggcgcattgctg > 1:3082649‑M1/1‑95 (MQ=255) aGTCCCTGGGAAGTGAAAAATGGCGCACAGTGTGCGCCC‑‑TTTTGTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTCACATATTCGCTTGCTCTGGTTCACCATTCTGCGCGGACTCTACTGAGGGCGCAGTgctggc > 2:2232578/1‑140 (MQ=255) aCCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgc < 2:3952282‑M1/140‑51 (MQ=255) ccTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcg > 1:6077823‑M1/1‑89 (MQ=255) ccTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcg > 2:6318597‑M1/1‑89 (MQ=255) cTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgg > 1:3214508‑M1/1‑88 (MQ=255) tgtgAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcggg < 1:744340‑M1/140‑54 (MQ=255) tgtgAAGGGAAAATTGGCGCACAGTGTGCTCAA‑‑TTTTTTTTGTCTGCCGTTTACCGATACTGCGTCACGCGTAACATATTCNCTTGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcggg < 1:5698262‑M1/140‑54 (MQ=255) gtgtagtgaaAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATAATCCCTTGAtctggttcaccattctgcggtgactatactgaaggcgcattgctggctgcggga > 2:4823482‑M1/1‑86 (MQ=255) gtgaagtgaaAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTa > 1:985099/1‑72 (MQ=255) gtgaagtgaaAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcggga > 1:796362‑M1/1‑86 (MQ=255) gtgaagtgaaAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcggga > 2:4154081‑M1/1‑86 (MQ=255) tgaagtgaaAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggag > 2:2006648‑M1/1‑85 (MQ=255) tgaagtgaaAAATGGCGCACATTGTGCGCCA‑‑‑TTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagt < 2:1512832‑M1/140‑57 (MQ=255) tgaagtgaaAAATGGCGCACATTGTGCGACA‑‑TTATTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCACTTGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggag > 2:4784263‑M1/1‑85 (MQ=255) aagtgaaAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagtt > 1:6323722‑M1/1‑83 (MQ=255) gtgaaAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgc > 1:1348678‑M1/1‑81 (MQ=255) aaaaaTGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgctgactctacagaaggcgcattgctggctgcgggagttgctcc > 1:2444198‑M1/1‑78 (MQ=255) aaaaaTGGCGCACAATGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctcc > 1:1066018‑M1/1‑78 (MQ=255) aaaaTGGCGCACATTGTGCGCCATTTTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctc < 2:3016293‑M1/140‑62 (MQ=255) aaTGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgc > 2:586431‑M1/1‑75 (MQ=255) ggCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgct < 2:3818444‑M1/140‑69 (MQ=255) acaTTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccg < 2:5264041‑M1/140‑74 (MQ=255) acaTTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccg < 1:5994024‑M1/140‑74 (MQ=255) caTTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACAGATTCCCTTGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccacggctcaccga < 2:5725401‑M1/140‑75 (MQ=255) aTTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaa < 1:817392‑M1/140‑76 (MQ=255) aTTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaa < 2:2576917‑M1/140‑76 (MQ=255) aTTGTGCGCCA‑‑ATTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaa < 1:4181232‑M1/140‑76 (MQ=255) tgtgCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaac > 2:2708791‑M1/1‑63 (MQ=255) tgCGCCAT‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaacc > 1:3157482‑M1/1‑62 (MQ=255) gcgcCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccgg < 2:5134326‑M1/140‑81 (MQ=255) gcgcCA‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccgg > 2:1868185‑M1/1‑60 (MQ=255) a‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTACCCTATTCCCGAGCtctggttcaccaatctgcgctgactctactgaaggcgcatagctggctgcgggagttgctccactgctcaccgaaaccggatacc > 2:5153304‑M1/1‑55 (MQ=255) a‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggatacc > 2:1401286‑M1/1‑55 (MQ=255) a‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggatacc < 2:5483261‑M1/140‑86 (MQ=255) a‑‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggatacc > 2:557708‑M1/1‑55 (MQ=255) ttttttGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctg < 1:5792617‑M1/140‑89 (MQ=255) ttttttGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctg < 1:4897781‑M1/140‑89 (MQ=255) ttttGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctgcc < 1:2025733‑M1/140‑91 (MQ=255) tGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctgcccga < 2:4281374‑M1/140‑94 (MQ=255) cTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctgcccgacga < 2:3391842‑M1/140‑97 (MQ=255) cTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctgcccgacga > 1:4854497‑M1/1‑44 (MQ=255) tGCCGTTTACCGCTACTGCGTCACGCGTAACGTATTCCCTTGCtgtggttcaccattctgcgctgcctctcctgaatgcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctgcccgacgat > 2:1059058‑M1/1‑43 (MQ=255) gCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctgcccgacgata < 2:1751950‑M1/140‑99 (MQ=255) ccGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattcttcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctgcccgacgatac < 1:3829144‑M1/140‑100 (MQ=255) ttACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgcggactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctgcccgacgatacaacg < 1:3627861‑M1/140‑104 (MQ=255) tACCGCTACTGCGTCACGCGTAACATATTCCCTTGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctgcccgacgatacaacgc > 2:4448229‑M1/1‑36 (MQ=255) | TCAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTTGTCTGCCGTTTACCGTTACTGCGTCACGCGTAACATATTCCCTTGC‑‑‑‑‑TTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGC > NZ_CP025268/1762404‑1762669 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |