BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP025268	2,016,740	T→C	105 (TAA→TAG)	fliE ←	flagellar hook‑basal body complex protein FliE

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	2,016,740	0	T	C	100.0%	1025.4 / NA	293	105 (TAA→TAG)	fliE	flagellar hook‑basal body complex protein FliE
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (181/112); total (181/112)

Only 100 of 293 total aligned reads displayed.

GTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAG  >  NZ_CP025268/2016603‑2016876

gTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTATGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACATGTTACAAAACCTa                                                                                                                                        >  2:3863889/1‑140 (MQ=255)

 ttATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTac                                                                                                                                       >  1:3548971/1‑140 (MQ=255)

   aTCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTacac                                                                                                                                     >  1:5613992/1‑140 (MQ=255)

     cgcgTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCt                                                                                                                                   <  1:6198213/140‑1 (MQ=255)

       cgTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGc                                                                                                                                 <  2:3248078/140‑1 (MQ=255)

        gTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCa                                                                                                                                >  1:2754949/1‑140 (MQ=255)

         tataCGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCAt                                                                                                                               >  1:1704344/1‑140 (MQ=255)

         tataCGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCAt                                                                                                                               <  2:1690003/140‑1 (MQ=255)

                 tCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCtcatca                                                                                                                       <  1:2169092/140‑1 (MQ=255)

                 tCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTGTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCtcatca                                                                                                                       <  2:3395998/140‑1 (MQ=255)

                  cGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCCTCAc                                                                                                                      >  2:4615692/1‑140 (MQ=255)

                    tGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACtt                                                                                                                    >  2:1933813/1‑140 (MQ=255)

                          gCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGAt                                                                                                              >  1:4359732/1‑140 (MQ=255)

                          gCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGAt                                                                                                              >  1:5264292/1‑140 (MQ=255)

                              aaaaCGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATAcgc                                                                                                          >  1:2631504/1‑140 (MQ=255)

                                    ttCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGccac                                                                                                    <  2:3646414/140‑1 (MQ=255)

                                    ttCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGccac                                                                                                    <  2:4932638/140‑1 (MQ=255)

                                    ttCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGccac                                                                                                    <  1:3403375/140‑1 (MQ=255)

                                    ttCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGccac                                                                                                    <  2:4965110/140‑1 (MQ=255)

                                    ttCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGACCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCAGGCTCATCACTTCCTGATACGCCGccac                                                                                                    <  2:5058353/140‑1 (MQ=255)

                                     tCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGccacc                                                                                                   <  1:6145464/140‑1 (MQ=255)

                                     tCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGccacc                                                                                                   >  1:1801718/1‑140 (MQ=255)

                                     tCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGccacc                                                                                                   >  2:2792097/1‑140 (MQ=255)

                                               gTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTAc                                                                                         >  2:2061937/1‑140 (MQ=255)

                                                tATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACg                                                                                        <  2:1790734/140‑1 (MQ=255)

                                                   ccATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTTCACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCAc                                                                                     >  2:3123559/1‑140 (MQ=255)

                                                   ccATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCAc                                                                                     >  2:2371920/1‑140 (MQ=255)

                                                   ccATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCAc                                                                                     <  1:1369300/140‑1 (MQ=255)

                                                    cATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTAATACGCAcc                                                                                    >  2:3745651/1‑140 (MQ=255)

                                                       tttAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAATCCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCAACAGCTTATTACGCACCTGa                                                                                 >  2:6436379/1‑140 (MQ=255)

                                                       tttAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGa                                                                                 <  1:3735226/140‑1 (MQ=255)

                                                       tttAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGa                                                                                 >  1:3388863/1‑140 (MQ=255)

                                                         tAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACATCAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTAGTACGCACCTGAAt                                                                               >  2:3597917/1‑140 (MQ=255)

                                                         tAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAAt                                                                               >  1:3313680/1‑140 (MQ=255)

                                                          aaaCCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATc                                                                              <  2:852996/140‑1 (MQ=255)

                                                                gcaaTTGAGAGCGTGGGCCCCAGCCATGCCCCACGCGGTGAGCTCGGATGTAATTAACAACAGGTGACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCAtt                                                                        <  2:5921191/138‑1 (MQ=255)

                                                                gAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCAtt                                                                        >  1:64634/1‑140 (MQ=255)

                                                                 aaaTTGAGTGAGTTTTCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCAttt                                                                       >  1:2235307/1‑140 (MQ=255)

                                                                 aaaTTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCAGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCAttt                                                                       >  1:5720338/1‑140 (MQ=255)

                                                                      gagtgagtTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATa                                                                  <  2:3156407/140‑1 (MQ=255)

                                                                           agtTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCAtt                                                                        >  2:6202638/1‑129 (MQ=255)

                                                                            gtTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACt                                                            <  1:2371920/140‑1 (MQ=255)

                                                                             tttGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCACCATTTGCATAGAAACTg                                                           >  2:518199/1‑140 (MQ=255)

                                                                               tGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAg                                                         >  2:1633730/1‑140 (MQ=255)

                                                                               tGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAg                                                         <  2:3083299/140‑1 (MQ=255)

                                                                                 ccccATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGc                                                       <  1:3061474/140‑1 (MQ=255)

                                                                                    catccatGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCttt                                                    <  1:904214/140‑1 (MQ=255)

                                                                                          tGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCat                                              >  1:6224692/1‑140 (MQ=255)

                                                                                           gCCCCACGCGGTGAGATCGGATGTAATTAACACCAGGTTACAAAACCTACACCTGCATGCTCATCACTGCCTGATACGCCGCCACCTGCTTATTACGCACCTGCATCCCCATTTGCATAGAAACTGAGGCTTTTTGCata                                             <  2:4852550/140‑1 (MQ=255)

                                                                                           gCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCata                                             <  1:455809/140‑1 (MQ=255)

                                                                                           gCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCata                                             <  2:217130/140‑1 (MQ=255)

                                                                                           gCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCata                                             >  1:4502048/1‑140 (MQ=255)

                                                                                              ccACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTAAGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCg                                          >  1:529906/1‑140 (MQ=255)

                                                                                                agggggTGAGGTCGGAGGTAATTATCAACAGGTTACTAAACCTTCACCTGCATGCTCATCAGTTCCTGATACGGCGCCACCAGCTTATTACGCTCGGGAATCCACATTTGCATAGAATCTGAGGCTTTTTGGATATgggg                                        >  2:1034853/5‑139 (MQ=255)

                                                                                                aCGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCAtt                                                                        <  2:5386012/108‑1 (MQ=255)

                                                                                                aCGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGt                                        <  1:11018/140‑1 (MQ=255)

                                                                                                aCGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGt                                        >  2:4121534/1‑140 (MQ=255)

                                                                                                aCGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGt                                        >  2:4772925/1‑140 (MQ=255)

                                                                                                aCGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGt                                        <  1:6389714/140‑1 (MQ=255)

                                                                                                aCGCGGTGAGATAGGATGTAATTAACAACAGGTGACAAACCCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGt                                        <  2:3262011/140‑1 (MQ=255)

                                                                                                 cgcgGTGAGTTCGGATGTCATTCACAACAGGTTACAAATCCTACCCCTGCATGGGCATCCCTTCCTGATACGCCGCCACCAGCGTAGTAAGCACCTGACTCCCCCTGTGCCTCGCAACTGAGGCTTGTTGCTTATCgggc                                       >  2:5813116/1‑138 (MQ=255)

                                                                                                 cgcgGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATccc                                                                            <  2:4221302/103‑1 (MQ=255)

                                                                                                 cgcgGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATccc                                                                            >  1:4221302/1‑103 (MQ=255)

                                                                                                 cgcgGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGtc                                       >  2:638756/1‑140 (MQ=255)

                                                                                                 cgcgGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGtc                                       >  2:2391994/1‑140 (MQ=255)

                                                                                                 cgcgGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGtc                                       >  1:1781956/1‑140 (MQ=255)

                                                                                                 cgcgGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGtc                                       >  2:297082/1‑140 (MQ=255)

                                                                                                 cgcgGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGtc                                       >  1:603056/1‑140 (MQ=255)

                                                                                                 cgcgGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGAATAGAAACTGAGGCTTTTTGCATATCGGtc                                       >  1:5836327/1‑140 (MQ=255)

                                                                                                 cgcgGGGAGATCGGATGTACTTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCAGTTGCATAGAAACTGAGGCTGTTTGCATATCGGtc                                       >  2:1370359/1‑140 (MQ=255)

                                                                                                   cgGTGAGATCGGATGTAATTAACATCTGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCTGCTTATTTCGCACCTGAATCCCGATTTGCATAGACACTGAGGCTTTTTGCTTGTCGGtcat                                     <  2:5425077/140‑1 (MQ=255)

                                                                                                     gTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGtcatca                                   <  1:6275561/140‑1 (MQ=255)

                                                                                                     gTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGAATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCTTTTGCATAGAAACTGAGGCTTTTTGCATATCGGtcatca                                   <  2:1475475/140‑1 (MQ=255)

                                                                                                      tGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATcac                                  >  1:4429018/1‑140 (MQ=255)

                                                                                                       gagaTCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATcaca                                 <  1:2978218/140‑1 (MQ=255)

                                                                                                       gagaTCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATcaca                                 <  1:1625006/140‑1 (MQ=255)

                                                                                                              gATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTa                          >  1:3117504/1‑140 (MQ=255)

                                                                                                              gATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTa                          >  2:1575207/1‑140 (MQ=255)

                                                                                                                tGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAac                        >  1:2059916/1‑140 (MQ=255)

                                                                                                                 gTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAacg                       <  2:5264292/140‑1 (MQ=255)

                                                                                                                    cttAACAACAGGTTCCAAAACCTACACCTGCCTGCTCATCACTTCCTGATACGCCGCCCCCAGCTTATTACGCACCTGAATCCCCATTTGCCTAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAacgcca                    >  2:570064/2‑140 (MQ=255)

                                                                                                                    aTTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAacgcca                    >  1:5167730/1‑140 (MQ=255)

                                                                                                                    aTTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGGCATCACATCGTTTAacgcca                    >  2:2879407/1‑140 (MQ=255)

                                                                                                                     ttAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCt                                                                                   >  2:1595174/1‑76 (MQ=255)

                                                                                                                       aacaacAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAacgccacgc                 <  1:5819893/140‑1 (MQ=255)

                                                                                                                       aacaacAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAacgccacgc                 <  1:1933813/140‑1 (MQ=255)

                                                                                                                       aacaacAGGTTACAAAACCTACACCTGCATGCTCATCACTTACTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAacgccacgc                 <  2:510578/140‑1 (MQ=255)

                                                                                                                         caacaGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCg               <  2:5631050/140‑1 (MQ=255)

                                                                                                                         caacaGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCg               >  1:83675/1‑140 (MQ=255)

                                                                                                                           acaGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCggg             <  2:2631504/140‑1 (MQ=255)

                                                                                                                            caGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGt            >  1:1170212/1‑140 (MQ=255)

                                                                                                                            caGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGt            >  1:3195493/1‑140 (MQ=255)

                                                                                                                            caGGTTACAAAACCTAAACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACATGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGt            >  1:4937794/1‑140 (MQ=255)

                                                                                                                             aGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGtt           >  2:4374165/1‑140 (MQ=255)

                                                                                                                             aGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGtt           >  1:959040/1‑140 (MQ=255)

                                                                                                                             aGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGtt           <  1:4995784/140‑1 (MQ=255)

                                                                                                                               gTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGc                                                       <  1:4287321/94‑1 (MQ=255)

                                                                                                                               gTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCa         >  2:1208305/1‑140 (MQ=255)

                                                                                                                               gTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTAATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCCTTTAACGCCACGCCGGGTTCa         >  2:6296745/1‑140 (MQ=255)

                                                                                                                                   cAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCga     >  1:4091935/1‑140 (MQ=255)

GTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAG  >  NZ_CP025268/2016603‑2016876

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`