| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 356,842 | T→C | *300* (TAA→TAG) | cynR ← | transcriptional regulator CynR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 356,842 | 0 | T | C | 99.6% | 775.2 / ‑4.7 | 246 | *300* (TAA→TAG) | cynR | transcriptional regulator CynR |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (150/95); total (150/96) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.90e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.79e-01 | |||||||||||
Only 100 of 246 total aligned reads displayed.
CGCAGCGGCTGTCTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑TTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAG > NZ_CP025268/356705‑356978 | gCAGCGGCTGTCTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTAc < 1:1308337/140‑1 (MQ=255) cGGCTGTCTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCTCAGACCTGTGTCAGCGG‑CTACCGTg > 2:5455901/1‑140 (MQ=255) gCTGTCTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGAt > 2:4312587/1‑140 (MQ=255) gCTGTCTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGAt > 1:637600/1‑140 (MQ=255) gCTGTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGcc > 1:465698/1‑140 (MQ=38) agcttAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCa < 2:3432574/128‑1 (MQ=9) ttATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACcg < 2:6017375/140‑1 (MQ=21) ttATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACcg < 1:2897796/140‑1 (MQ=21) ctGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACcgcg < 1:4244294/139‑1 (MQ=21) tGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCgcgc > 2:610260/1‑140 (MQ=21) tGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCgcgc > 1:1589944/1‑140 (MQ=21) tGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCgcgc > 1:6161891/1‑140 (MQ=21) gCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCa > 2:1027896/1‑140 (MQ=21) gCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCa > 1:3190580/1‑140 (MQ=21) gCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAAATCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCa > 2:3673939/1‑140 (MQ=21) ccGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCAt < 1:5870463/140‑1 (MQ=21) ccGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCAt < 1:3463844/140‑1 (MQ=21) ccGGATGCGGCGTGAACGCCTGATCCTGCCTACGTAGCGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCAt < 2:6204869/140‑1 (MQ=255) cGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCAtt > 2:4299058/1‑140 (MQ=21) cGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCAtt > 1:6302251/1‑140 (MQ=21) gATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTa > 1:3517112/1‑140 (MQ=21) cgTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCAt > 1:4012483/1‑130 (MQ=25) tgcaCGCCTTCGCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGcc < 2:4452388/137‑1 (MQ=255) tGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGcc < 2:3549440/140‑1 (MQ=21) tGAACGCCTTACCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGcc < 2:3874565/140‑1 (MQ=21) agcaCGCCTGACCCGGCCTACGACGCTCACTGACCGCGAAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGGCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGcc < 2:6296696/137‑1 (MQ=11) aCGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCAtg < 2:2837291/140‑1 (MQ=21) cGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCNGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCAtgt > 1:5692955/1‑140 (MQ=21) cTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAATCGTAGCGCATCAGGCAATTCCAGCCGCAGAACAGTGTCAGCGG‑CTACCGTGATTCATTACCGCCAACAACCGCGCATTAATCCAACGCCATGAGCa > 2:6378167/1‑140 (MQ=11) cTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACTTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGGGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCa > 1:4205698/1‑140 (MQ=255) ccTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCt > 2:2017918/1‑140 (MQ=21) cTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCCATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCtt > 2:5099439/1‑140 (MQ=21) cTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATGTATCCAACGCCATGTGCAAAAATGCCtt > 2:4626502/1‑140 (MQ=21) gTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTcgcg > 1:579403/1‑140 (MQ=25) tAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCgcgg < 1:3045519/140‑1 (MQ=37) agCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGcggcgg > 2:3850937/1‑140 (MQ=37) agCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGGGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGcggcgg > 1:5437296/1‑140 (MQ=255) gCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCggcggc > 2:4838564/1‑140 (MQ=37) tGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTc > 2:1576220/1‑140 (MQ=37) tGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTc > 1:3702841/1‑140 (MQ=37) tGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTc > 1:314677/1‑140 (MQ=37) tGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTc > 1:2462866/1‑140 (MQ=37) tGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTc > 2:6349452/1‑140 (MQ=37) tGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTc > 2:3491369/1‑140 (MQ=37) taCTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCAGTTATCCAACGCCATGTGCAAAACTGCCTTCGCGGCGGCTGTCTg > 2:2444714/2‑140 (MQ=255) tCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCa > 2:431341/1‑140 (MQ=37) gTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGc > 1:4858904/1‑140 (MQ=37) tAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGAACTGTGTCAGCGG‑CTACCGTGATTCATTACCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCt > 1:2830199/1‑140 (MQ=255) ggCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTAt < 1:503073/140‑1 (MQ=255) ggCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTAt > 1:4797356/1‑140 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCAttt < 2:5668137/68‑1 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTAttt > 2:6454875/1‑140 (MQ=255) gATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGG‑CTACCGTGATTCATTCCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTc > 1:5191269/1‑140 (MQ=255) aTAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTcc > 2:4479251/1‑140 (MQ=255) aTAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTcc > 1:2787547/1‑140 (MQ=255) aaGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTccgc < 1:5356031/140‑1 (MQ=255) tAGCGACTCAGGCACTTCCAGCCGCAGACCTGTGTCATCGGCTTACTG‑GATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGcaa < 2:1732528/140‑1 (MQ=17) cgcATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGcaccaa > 1:1459310/1‑140 (MQ=255) cgcATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGcaacaa < 2:1432242/140‑1 (MQ=255) cgcATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGcaacaa > 2:2932120/1‑140 (MQ=255) cgcATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCACGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGcaacaa > 1:564417/1‑140 (MQ=255) cgcATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGGGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCGTCGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGcaacaa > 2:2342404/1‑140 (MQ=255) cATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGG‑CTACCGTGATTCATTCCCGCCAACAACCGCGCATTACTCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTCATCCGctacccgg > 1:4109833/1‑136 (MQ=11) cATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCTCTGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACaaaa > 2:3358145/1‑140 (MQ=255) cATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACaaaa > 1:1000684/1‑140 (MQ=255) tCAGGCAATTCCAGCCGCATACCTTTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAAcc > 1:762965/1‑140 (MQ=255) cAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAAccg > 2:1848355/1‑140 (MQ=255) cAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAAccg > 1:1707104/1‑140 (MQ=255) cAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAAccg > 2:1294401/1‑140 (MQ=255) cAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAAccg > 2:4975768/1‑140 (MQ=255) cAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAAccg > 1:5112072/1‑140 (MQ=255) cAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAAccg > 1:6063761/1‑140 (MQ=255) cAGGCAAATCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATGTTTCCGCCGCAACAAAAccg > 2:2238960/1‑140 (MQ=255) gCAATTCCAGCCGCTGACCTGTGTCAGCGG‑CTACCGTGATTCATTCCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAAccgccg < 1:2110572/140‑1 (MQ=255) gCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGTCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAAcagccg > 1:458111/1‑140 (MQ=255) gCAATTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATGTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACACAAccgccg < 2:3244918/140‑1 (MQ=255) atagacAGCCGCTGATCTGTGTCAGCGG‑CTACCGTGATTCATTACCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGtt < 2:5168296/135‑1 (MQ=17) aaTTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCCGCTATTTTTCCGCCGCAACAAAACCGCCGtt < 1:2280636/140‑1 (MQ=255) aaTTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAACACCGCCGtt < 2:1820837/140‑1 (MQ=255) aaTTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGtt < 1:3396328/140‑1 (MQ=255) aaTTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGtt < 1:2112909/140‑1 (MQ=255) aaTTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTGATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGtt < 2:6430394/140‑1 (MQ=255) aTTCCAGCCGCTGATCTGTGTCAGCGG‑CTACCGTGATTCATTCCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTtc < 1:1875674/140‑1 (MQ=255) aTTCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTtc < 1:4671671/140‑1 (MQ=255) tCCAGCCGCAGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTtctc < 1:4419103/140‑1 (MQ=255) ccGCTGATCTGTGTCAGCGG‑CTACCGTGATTCATTCCCGCCAACAACCGCGCATTGATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTCCTCCGCAAATAAGCCGCCGGGCGCTCCag > 2:2112599/1‑140 (MQ=14) aGACCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCagtagt > 2:4683385/1‑140 (MQ=255) aCCTGTGTCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTgg < 1:4509744/140‑1 (MQ=255) aCCTGTGTCAGCGG‑CTACCGTGATTCAGTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTgg < 1:6457662/140‑1 (MQ=255) aCCTGTGTCAGCGG‑CTACCGTGATTCAGTTCCGCCAACAACCGCGCAATTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTgg < 2:6270451/140‑1 (MQ=255) gtgtCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCggg < 1:1097258/140‑1 (MQ=255) tgtCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCACCACAACCGCCGTTCTCTCCAGTAGTGGCgggg > 2:5718390/1‑140 (MQ=255) tgtCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCgggg > 2:59618/1‑140 (MQ=255) tgtCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCgggg > 2:5139654/1‑140 (MQ=255) tgtCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCgggg > 1:3598491/1‑140 (MQ=255) gtCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGc < 1:2859498/140‑1 (MQ=255) tCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCa < 1:3265199/140‑1 (MQ=255) tCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCa < 2:5085259/140‑1 (MQ=255) tCAGCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCa < 2:1000684/140‑1 (MQ=255) gCGG‑CTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAaga > 1:6266497/1‑140 (MQ=255) | CGCAGCGGCTGTCTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGG‑TTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAG > NZ_CP025268/356705‑356978 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |