| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 1,705,019 | (T)6→5 | pseudogene (848/1594 nt) | malX → | PTS maltose transporter subunit IICB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 1,705,014 | 0 | T | . | 99.1% | 1071.2 / 1.2 | 228 | pseudogene (843/1594 nt) | malX | PTS maltose transporter subunit IICB |
| Reads supporting (aligned to +/- strand): ref base T (0/2); new base . (95/130); total (95/133) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.11e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 236 total aligned reads displayed.
GCCGTTTGGTCTGCATCACATTCTGGTGGCATTAATTCGCTTTACCGACGCAGGCGGCACGCAGGAAGTCTGCGGTCAAACCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGGTTTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAGGTGCAGCGTTAGCTATGTATCACTGCGCGCGCCCGGAAAATCGCCATAAAATTAAAGGTCTGCTGAT > NZ_CP025268/1704876‑1705149 | gCCGTTTGGTCTGCATCACATTCTGGTGGCATTAATTCGCTTTACCGACGCAGGCGGCACGCAGGAAGTCTGCGGTCAAACCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGGtt > 1:4472433/1‑140 (MQ=255) gTTTGGTCTGCATCACATTCTGGTGGCATTAATTCGCTTTACCGACGCAGGCGGCACGCAGGAAGTCTGCGGTCAAACCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGGttttt > 1:171663/1‑140 (MQ=255) tGGTCTGCATCACATTCTGGTGGCATTAATTCGCTTTACCGACGCAGGCGGCACGCAGGAAGTCTGCGGTCAAACCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGGtttttctg > 2:1456208/1‑137 (MQ=255) tGCATCACATTCTGGTGGCATTAATTCGCTTTACCGACGCAGGCGGCACGCAGGAAGTCTGCGGTCAAACCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAgc > 2:370136/1‑140 (MQ=255) cATCACATTCTGGTGGCATTAATTCGCTTTACCGACGCAGGCGGCACGCCGGAAGTCTGCGGTCAAACCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAgcgc > 1:1791292/1‑140 (MQ=255) aTCACATTCTGGTGGCATTAATTCGCTTTACCGACGCAGGCGGCACGCAGGAAGTCTGCGGTCAAACCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGcc < 1:2238146/140‑1 (MQ=255) tCACATTCTGGTGGCATTAATTCGCTTTACCGACGCAGGCGGCACGCAGGAAGTCTGCGGTCAAACCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCa < 2:4461575/140‑1 (MQ=255) aTTCTGGTGGCATTAATTCGCTTTACCGACGCAGGCGGCACGCAGGAAGTCTGCGGTCAAACCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCAcgcg < 2:1781457/140‑1 (MQ=255) ttCTGTTGGCATTAATTCTCTTTACCGACGCAGGCGGCACGCAGGAAGTCTGCGGTCAAACCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGt < 2:3304980/140‑1 (MQ=255) ttCTGGTGGCATTATTTCGCTTTAGCGACGCAGGCGGCACGCAGGTAGTCTGCGGTCAAACCGTCAGCGGCGCACTGACCATCTTCCACGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGt < 2:3531850/140‑1 (MQ=255) ttCTGGTGGCATTAATACGCTTTACCGACGCAGGCGGCACGCAGGAAGTCTGCGGTCAACCCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGt < 1:2820206/140‑1 (MQ=255) tggtggCATTAATTCGCTTTACCGACGCAGGCGGCACGCAGGAAGTCTGCGGTCAAACCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTc > 1:1498325/1‑140 (MQ=255) tggtggCATTAATTCGCTTTACCGACGCAGGCGGCACGCAGGAAGTCTGCGGTCAAACCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTc > 1:2331713/1‑140 (MQ=255) tggtggCATTAATTCGCTTTACCGACGCAGGCGGCACGCAGGAAGTCTGCGGTCAAACCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTc > 2:1287036/1‑140 (MQ=255) tggtggCATTAATTCGCTTTACCGACGCAGGCGGCACGCAGGAAGTCTGCGGTCAAACCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTc > 2:2626132/1‑140 (MQ=255) tggtggCATTAATTCGCTTTACCGACGCAGGCGGCACGCAGGAAGTCTGCGGTCAAACCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTc > 1:1843531/1‑140 (MQ=255) tggtggCATTAATTCGCTTTACCGACGCAGGCGGCACGCAGGAAGTCTGCGGTCAAACCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTc > 2:272166/1‑140 (MQ=255) tggtggCATTAATTCGCTTTACCGACGCAGGCGGCACGCAGGAAGTCTGCGGTCAAACCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGGTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCAACGCGGTTc > 2:2778903/1‑140 (MQ=255) ggtggCATTAATTCGCTTTACCGACGCAGGCGGCACGCAGGAAGTCTGCGGTCAAACCTTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTcc < 1:4250576/140‑1 (MQ=255) ggtggCATTAATTCGCTTTACCGACGCAGGCGGCACGCAGGAAGTCTGCGGTCAAACCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTcc < 2:130041/140‑1 (MQ=255) gtggCATTAATTCGCTTTACCGACGCAGGCGGCACTCAGGGAGTCTGTGGTCAAGCCGTCAGCGGCGCACTGAGCATCTTCCAGGCGCAA‑TTGAGTTGCCCGCCCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCt > 2:170482/1‑140 (MQ=255) gCATTAATTCGCTTTACCGACGCAGGCGGCACGCGGGAAGTCTGCGGTCAAACCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTc > 2:4344235/1‑140 (MQ=255) gCATTAATTCGCTTTACCGACGCAGGCGGCACGCAGGAAGTCTGCGGTCAAACCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTc < 2:4167271/140‑1 (MQ=255) aTTAATTCGCTTTACCGACGCAGGCGGCACGCAGGAAGTCTGCGGTCAAACCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGc < 1:110355/140‑1 (MQ=255) aTTAATTCGCTTTACCGACGCAGGCGGCACGCAGGAAGTCTGCGGTCAAACCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGc < 1:3767782/140‑1 (MQ=255) aTTAATTCGCTTTACCGACGCAGGCGGCACGCAGGAAGTCTGCGGTCAAACCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGc < 2:782468/140‑1 (MQ=255) aTTAATTCGCTTTACCGACGCAGGCGGCACGCAGGAAGTCTGCGGTCAAACCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGc < 1:2051004/140‑1 (MQ=255) aTTAATTCGCTTTACCGACGCAGGCGGCACGCAGGAAGTCTGCGGTCAAACCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGc < 1:1987256/140‑1 (MQ=255) ttcagtCGCTTTACCGACGCAGGCGGCACGCAGGAAGTGTGCGGTCAAACCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCa < 2:759929/135‑1 (MQ=255) tAATTCGCTTTACCGACGCAGGCGGCACGCAGGAAGTCTGCGGTCAAACCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCaa < 2:4405923/140‑1 (MQ=255) tAATTCGCTTTACCGACGCAGGCGGCACGCAGGAAGTCTGCGGTCAAACCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCaa < 2:618748/140‑1 (MQ=255) ttCGCTTTACCGACGCAGGCGGCACGCAGGAAGTCTGCGGTCAAACCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGt > 1:2540824/1‑140 (MQ=255) tttACCGACGCAGGCGGCACGCAGGAAGTCTGCGGTCAAACCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGTCACGCGGTTCCTGTCGCAAGGTAAAAt > 2:2883051/1‑140 (MQ=255) aCGCAGGCGGCACGCAGGAAGTCTGCGGTCAAACCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCg < 1:3218102/140‑1 (MQ=255) ggcggcACGCAGGAAGTCTGCGGTCAAACCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTtct > 1:3495700/1‑140 (MQ=255) cACTCAGGAAGTTTGAGGGCAACCGGCCAGCCGCGCGCTGACCATCTTCCAGGCGCAA‑GTGAGTTGCCCGACCTCTCCCGG‑GTGTTCTGAAAGCGCCACACGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTcggcg < 2:27638/140‑1 (MQ=255) cACGCAGGAAGTCTGCGGTCAAACCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTcggcg < 1:3529485/140‑1 (MQ=255) cACGCAGGAAGTCTGCGGTCAAACCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTcggcg < 1:3711502/140‑1 (MQ=255) cACGCAGGAAGTCTGCGGTCAAACCGTCAGAGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCCCGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTcggcg < 1:1246066/140‑1 (MQ=255) cAGGAAGTCTGCGGTCAAACCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTCGGCGGTCt < 2:22499/140‑1 (MQ=255) gAAGTCTGCGGTCAAACCGTCAGCGGCGCCACGCAGATCGTCTGCGGGCAA‑TCGGGCAGCCCGGCCCCGCCCGG‑TTTCTCTGCAAGCGCCACGCGCTCCCCCTCGCAAGGGAAAACTCCTGCGTTTCTCGGCGGGCTGcc < 2:4713216/140‑1 (MQ=255) gAAGTCTGCGGCCAAACCGTCGGCGGCGCACTGACCATCTTCCGCGCGCAA‑TCGAGTTGCCCGACC‑CTGCCCGGCTTTCCTGAAAGCGCGACGCGCTTCCTTTCGCAAGGTATAATGCCTGCGTTTCTCGGCGGTCTGcc < 2:2048399/140‑1 (MQ=255) gTCTGCGGTCAAACCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCCCGCGTTTCCTTTCGCACGGTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAgg > 2:3848522/1‑140 (MQ=255) gTCTGCGGTCAAACCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAgg > 1:4969840/1‑140 (MQ=255) tCTGCGGTCAAACCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAGGt < 1:1612614/140‑1 (MQ=255) tCTGCGGTCAAACCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAA‑GTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAGGTg < 1:4344235/140‑1 (MQ=255) cTGCGGTCAAACCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAGGTg < 1:4244368/140‑1 (MQ=255) tgaggTCAACCCGTCAGCGGCGCAAGGACACTCCTCCAGGCCCAA‑TTGAGTTGCCCCACCACTCACGG‑TTCCTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGACTGCGTATCTCGACGGTCTGCCAGGTGc < 2:1605881/137‑1 (MQ=255) tGCGGTCAAACCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTTAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAGGTGc < 1:4281546/140‑1 (MQ=255) tGCGGTCAAACCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGttt > 2:3928064/1‑120 (MQ=255) tGCGGTCAAACCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGttt < 1:3928064/120‑1 (MQ=255) tGCGGTCAAACCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAGGTGc > 2:3474376/1‑140 (MQ=255) tGCGGTCAAACCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TAGAGTTGCCCGACCACGCACGG‑TTTTGCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAGGTGc < 1:3047227/140‑1 (MQ=255) tCAAACCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAGGTGCAGCGt < 1:2017354/140‑1 (MQ=255) tCAAACCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAGGTGCAGCGt < 1:1008244/140‑1 (MQ=255) tCAAACCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAGGTGCAGCGt < 1:587594/140‑1 (MQ=255) tCAAACCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAGGTGCAGCGt < 1:2257700/140‑1 (MQ=255) tCAAACCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAGGTGCAGCGt < 1:82309/140‑1 (MQ=255) cAAACCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAGGTGCAGCGtt < 1:1401000/140‑1 (MQ=255) cAAACCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAGGTGCAGCGtt < 1:2018149/140‑1 (MQ=255) cAAACCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAGGTGCAGCGtt < 1:3991297/140‑1 (MQ=255) gaCCGTCTGCGCCTCACCGACCCTCGTGCAGG‑GCAAGTTGTGTGGCGCCACCCCTCACGG‑TGTTTCTGAAACCGCCGCGCGTTGCCTTTCGCTAGGTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAGGTGCAGCGTTAg < 2:1003741/139‑1 (MQ=255) aaCCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAGGTGCAGCGTTAg < 1:1179880/140‑1 (MQ=255) aaCCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAGGTGCAGCGTTAg < 1:4584591/140‑1 (MQ=255) aaCCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAGGTGCAGCGTTAg < 1:4928200/140‑1 (MQ=255) aaCCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAGGTGCAGCGTTAg < 1:1839528/140‑1 (MQ=255) aaCCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAGGTGCAGCGTTAg < 1:4727303/140‑1 (MQ=255) ccGTCAGCTGCGCCCTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACAACTCTCGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAGGTGCAGCGTTAGCt < 1:3021723/140‑1 (MQ=255) ccGTCAGCGGCGTACTGCCCCGCTGCCGGGCGGAA‑TTGAGTCGGCCGACCACCCACGG‑TTTTTCTGAAAGCGCCCCGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAGGTGCAGCGTTAGCt < 2:1870561/140‑1 (MQ=255) ccGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAGGTGCAGCGTTAGCt < 1:2113102/140‑1 (MQ=255) ccGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAGGTGCAGCGTTAGCt < 1:3113007/140‑1 (MQ=255) ccGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAGGTGCAGCGTTAGCt < 1:3563920/140‑1 (MQ=255) ccGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAGGTGCAGCGTTAGCt < 1:251172/140‑1 (MQ=255) ccGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAGGTGCAGCGTTAGCt < 1:4770878/140‑1 (MQ=255) ccGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAGGTGCAGCGTTAGCt < 1:5086756/140‑1 (MQ=255) gTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAGGTGCAGCGTTAGCTAt < 1:1262157/140‑1 (MQ=255) tCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAGGTGCAGCGTTAGCTATg < 1:3292778/140‑1 (MQ=255) aGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAGGTGCAGCGTTAGCTATGTa > 2:1227241/1‑140 (MQ=255) cACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAGGTGCAGCGTTAGCTATGTATCACTgc > 2:3010446/1‑140 (MQ=255) aCTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAGGTGCAGCGTTAGCTATGTATCACTgcg < 1:4026268/140‑1 (MQ=255) aCCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAGGTGCAGCGTTAGCTATGTATCACTgcgcgcg > 1:619433/1‑140 (MQ=255) aCCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAGGTGCAGCGTTAGCTATGTATCACTgcgcgcg > 2:158248/1‑140 (MQ=255) aCCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAGGTGCAGCGTTAGCTATGTATCACTgcgcgcg > 1:2871392/1‑140 (MQ=255) aCCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAGGTGCAGCGTTAGCTATGTATCACTacgcgcg > 2:2363778/1‑140 (MQ=255) tCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAGGTGCAGCGTTAGCTATGTATCACTGCGCGCGCCCg > 1:1550148/1‑140 (MQ=255) ttCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAGGTGCAGCGTTAGCTATGTATCACTGCGCGCGCCCGGa > 1:2910434/1‑140 (MQ=255) ccAGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTCGGCGGTCTCCCAGGTGCTGCGTTAGCTATGTATCACTGCGCGCGCCCGGcaa > 2:2749816/1‑140 (MQ=255) aGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAGGTGCAGCGTTAGCTATGTATCACTGCGCGCGCCCGGAAAAt > 2:510669/1‑140 (MQ=255) aGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAGGTGCAGCGTTAGCTATGTATCACTGCGCGCGCCCGGAAAAt > 2:4298347/1‑140 (MQ=255) aGGCGCAA‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAGGTGCAGCGTTAGCTATGTATCACTGCGCGCGCCCGGAAAAt < 1:2376199/140‑1 (MQ=255) aa‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAGGTGCAGCGTTAGCTATGTATCACTGCGCGCGCCCGGAAAATCGCCAt < 1:807884/140‑1 (MQ=255) a‑TTGAGTTGCCCGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAGGTGCAGCGTTAGCTATGTATCACTGCGCGCGCCCGGAAAATCGCCATa > 2:4791889/1‑140 (MQ=255) a‑TTGAGTTGCCCGACCACTCACGG‑GTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAGGTGCAGCGTTAGCTATGTATCACTGCGCGCGCCCGGAAAATCGCCATa > 1:4873704/1‑140 (MQ=255) ttGCCCGACCACTCACGG‑TTTTTCTGAAAGCGTCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTGGGCGGTCGGCCGGGCACTGCGATAGCGAGGTATCACTGCGCTAGCCCGGAACATTGCCCGACAATTa > 2:321894/1‑140 (MQ=255) cccGACCACTCACGG‑TTTTTCTGAATGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAGGTGCAGCGTTAGCTATGTATCACTGCGCGCGCCCGGAAAATCGCCATAAAATTAAAg > 2:4598692/1‑140 (MQ=255) cccGACCACTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAGGTGCAGCGTTAg > 2:4002550/1‑95 (MQ=255) ccatcacgTTTTTTCTCAAAGCGCCGCGCGTTGCCTTTCGCAAGGTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAGGTGCAGCGTTAGCTATGTATCACTGCGCGCGCCCGGAAAATCGCCATAAAATTAAAGGTctgc < 2:1513219/133‑1 (MQ=255) aCTCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAGGTGCAGCGTTAGCTATGTATCACTGCGCGCGCCCGGAAAATCGCCATAAAATTAAAGGTctgct < 1:1035890/140‑1 (MQ=255) aCTCACGG‑TTTTTCTGAAAGAGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAGGTGCAGCGTTAGCTATGTATCACTGCGCGCGCCCGGAAAATCGCCATAAAATTAAAGGTctgct < 1:3988938/140‑1 (MQ=255) tCACGG‑TTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAGGTGCAGCGTTAGCTATGTATCACTGCGCGCGCCCGGAAAATCGCCATAAAATTAAAGGTCTGCTGa > 2:245791/1‑140 (MQ=255) | GCCGTTTGGTCTGCATCACATTCTGGTGGCATTAATTCGCTTTACCGACGCAGGCGGCACGCAGGAAGTCTGCGGTCAAACCGTCAGCGGCGCACTGACCATCTTCCAGGCGCAA‑TTGAGTTGCCCGACCACTCACGGTTTTTTCTGAAAGCGCCACGCGTTTCCTTTCGCAAGGTAAAATGCCTGCGTTTCTCGGCGGTCTGCCAGGTGCAGCGTTAGCTATGTATCACTGCGCGCGCCCGGAAAATCGCCATAAAATTAAAGGTCTGCTGAT > NZ_CP025268/1704876‑1705149 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |