| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 1,075,387 | +T | intergenic (+29/+226) | ymdF → / ← rutG | general stress protein/pyrimidine utilization transport protein G |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 1,075,387 | 1 | . | T | 98.5% | 1022.6 / 4.3 | 272 | intergenic (+29/+226) | ymdF/rutG | general stress protein/pyrimidine utilization transport protein G |
| Reads supporting (aligned to +/- strand): ref base . (0/4); new base T (120/148); total (120/152) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.33e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 273 total aligned reads displayed.
AAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAACCGGGCTAATCAATGA‑CGA‑AT‑CATTTTT‑G‑CTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACT > NZ_CP025268/1075253‑1075514 | aaaaGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑gtctg > 1:1076790/1‑136 (MQ=255) ggTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTTGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGc < 1:4932256/140‑1 (MQ=255) ggTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGc > 1:1849697/1‑140 (MQ=255) ggACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCg > 1:4230920/1‑140 (MQ=255) agcacagcGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCaa < 2:4037809/140‑1 (MQ=255) agcacagcGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCaa < 1:264020/140‑1 (MQ=255) cacagcGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCaaaa > 2:2473338/1‑140 (MQ=255) acagcGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCaaaaa < 1:4886000/140‑1 (MQ=255) agcGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTGATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGc > 2:4363685/1‑140 (MQ=255) gggTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCa > 2:1120040/1‑140 (MQ=255) gctAATTTCAAGAATGACCCGCAGCGCGCATCTGCAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGAAAAAGCGACCACTAGCCGGGCTAATCAATGC‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCAc < 2:4312043/138‑1 (MQ=255) gTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCTTCAcc > 2:4494945/1‑140 (MQ=255) gTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCAcc > 1:3882315/1‑140 (MQ=255) gTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCAcc > 2:2059822/1‑140 (MQ=255) gTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATCTTT‑GTCTGTAGCTCGTCAAAAAGCCATCAcc < 2:3887543/140‑1 (MQ=255) gTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGGCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCAcc > 2:4174825/1‑140 (MQ=255) ttCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCgg > 1:1038126/1‑140 (MQ=255) ttCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCgg > 2:5103344/1‑140 (MQ=255) gAATGACCCGCAGGGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGAGAACTAGCCGGGCTAATCAATGA‑CGATGG‑CATTTTT‑GTCTGTAGCGCGTCAAAAAGCCATCACCGCCGGTTAcc > 2:654689/1‑140 (MQ=255) aTGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCg < 2:1782166/140‑1 (MQ=255) aTGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCg < 1:3427318/140‑1 (MQ=255) aTGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCg < 1:4132999/140‑1 (MQ=255) aTGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCg < 2:2743261/140‑1 (MQ=255) aTGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCg < 1:705057/140‑1 (MQ=255) aTGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCg < 2:3787323/140‑1 (MQ=255) aCCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCggtg > 2:2136039/1‑140 (MQ=255) aCCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCggtg > 1:1156233/1‑140 (MQ=255) gCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTTCT‑CTCTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTg < 1:3583428/140‑1 (MQ=255) cgcATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGGTACCCGGTGGTTGATACtg > 2:454218/1‑140 (MQ=255) aTCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACtgatg > 2:304852/1‑140 (MQ=255) cTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCTATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGAc < 1:4836423/140‑1 (MQ=255) cTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGAc < 1:2032622/140‑1 (MQ=255) cTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGAc < 1:2683791/140‑1 (MQ=255) cTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGAc < 1:4414470/140‑1 (MQ=255) aGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAGAGCGACAACTAGCCGGGCTAATCAATGACCGA‑TG‑GCTTTTT‑GTCTGTAGCTCGTCACAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAAt < 2:4208310/140‑1 (MQ=255) ggTAAAAAAGGTGGTAAGAGCAGTCACGGCACAAGCGACAACTCGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCAATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTaa > 2:1414776/1‑140 (MQ=255) ggTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTaa > 1:376257/1‑140 (MQ=255) ggTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTaa > 2:3589877/1‑140 (MQ=255) ggTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTaa > 1:2753996/1‑140 (MQ=255) ggTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGAGGACAAATGTaa > 2:2680966/1‑140 (MQ=255) ggTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTAACCGGTGGTTGATACTGATGACAAATGTaa > 2:1552701/1‑140 (MQ=255) gTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAg < 1:4553577/140‑1 (MQ=255) tAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGc > 1:4481953/1‑140 (MQ=255) tAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGc > 2:191922/1‑140 (MQ=255) aaaaGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTg > 2:2347596/1‑140 (MQ=255) ataGGTGGTAAGAGCAGTCACGGCACAAGCGACAACTAGCGGGTCTAATCAGTGC‑CGA‑ATGCATTTGT‑GTCTGTTGCGCGTCAAAAATCCATCACCGCCGGTTACTCGGTGGTTGATACTGATGACAAATGTAAGCTTGc < 2:3667566/138‑1 (MQ=255) ggtggtAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTg < 2:2867821/140‑1 (MQ=255) ggtggtAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTg < 1:3090256/140‑1 (MQ=255) tggtAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGAt > 1:3039980/1‑140 (MQ=255) tggtAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGAt > 1:1504190/1‑140 (MQ=255) tggtAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGAt > 1:3289627/1‑140 (MQ=255) tggtAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGAt > 1:757625/1‑140 (MQ=255) ggtAAGAGCAGTCACGGCAAAGGCGACAACTAGCCGGGCTAATCAATAA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGCCAAATGGAAGCTTGCCTGATg > 2:2820587/1‑140 (MQ=255) ggtAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATg > 1:1558593/1‑140 (MQ=255) tAAGAGCAGTCACGGCAAAAGCGACACCTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATgcg < 1:4631266/140‑1 (MQ=255) tAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATgcg < 2:4412477/140‑1 (MQ=255) tAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATgcg < 1:956003/140‑1 (MQ=255) tAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATgcg < 1:2196198/140‑1 (MQ=255) tAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATgcg < 1:3448803/140‑1 (MQ=255) gccgTCACGGCAAAAGCGACAACTAGCCGTGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTCGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATg < 1:1314679/137‑1 (MQ=255) gCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATg < 1:4377804/140‑1 (MQ=255) cAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGc > 1:4781057/1‑140 (MQ=255) aGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCt > 2:1697563/1‑140 (MQ=255) aGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCt > 1:2343413/1‑140 (MQ=255) tCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTa > 1:655165/1‑140 (MQ=255) tCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTa > 2:4159727/1‑140 (MQ=255) tCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTa > 2:3287725/1‑140 (MQ=255) tCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTa > 2:3228061/1‑140 (MQ=255) gCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAgg < 1:5100478/140‑1 (MQ=255) gCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAgg < 2:3955749/140‑1 (MQ=255) gCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAgg < 1:2230376/140‑1 (MQ=255) gCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAgg < 1:2025313/140‑1 (MQ=255) gCAAAAGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTGTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAgg > 2:2516096/1‑140 (MQ=255) aaaaGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGcc < 1:2931216/140‑1 (MQ=255) aaaaGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGcc < 2:3534380/140‑1 (MQ=255) aGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAACGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTAc < 1:24691/140‑1 (MQ=255) aGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTAc > 1:1255813/1‑140 (MQ=255) aGCGACAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTAc > 2:3229519/1‑140 (MQ=255) aCAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCaga > 1:2094718/1‑140 (MQ=255) cAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCagaa < 2:4781057/140‑1 (MQ=255) cAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCagaa < 1:1900265/140‑1 (MQ=255) cAACTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCagaa < 1:3322463/140‑1 (MQ=255) aCTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCagaaga < 2:3584239/140‑1 (MQ=255) aCTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCagaaga < 2:4132599/140‑1 (MQ=255) cTAGCCGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGAt > 1:5029050/1‑140 (MQ=255) ccGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCa < 1:755285/140‑1 (MQ=255) ccGGGCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCa < 1:4696573/140‑1 (MQ=255) gCTAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAGAATCCATCACCGCCGGTTACCCGGCGGCTGATACTGATGACAAATGTAAGCTTGCACGATGCGCGCTGCTTATCACGCCTCCCAGAAGATTCCAacat > 2:750147/1‑140 (MQ=255) tAATCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAatatat < 2:1009313/140‑1 (MQ=255) caaTCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAatatat < 2:4921336/139‑1 (MQ=255) aTCAATGA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTg > 2:4297902/1‑140 (MQ=255) gA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTg > 1:581649/1‑140 (MQ=255) gA‑CGA‑ATGCATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTg > 1:2991984/1‑140 (MQ=255) cgcatccATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGACGATTACCCGGTGGTTGCTACTGATGCCAAATGTAAGCTTGCCTGATGCGAGATGCTTATCAGGCCTACCAGAAGATTGCCATATATTGCATCTGCa < 2:1328153/134‑1 (MQ=255) cgaatgcATTTTT‑GTCTGTAGCTCGTCAAAACGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGCTTGCAATATATTGAATTTGCa < 1:1795217/134‑1 (MQ=38) cgaatgcATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCa < 1:4118795/134‑1 (MQ=255) cgaatgcATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGAGTGCAATATATTGAATTTGCa < 2:2008392/134‑1 (MQ=39) aatgcATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACt > 1:774770/5‑140 (MQ=255) aatgcATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACt > 2:5058819/5‑140 (MQ=255) aatgcATTTTT‑GTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACt < 1:1327103/136‑1 (MQ=255) | AAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAACCGGGCTAATCAATGA‑CGA‑AT‑CATTTTT‑G‑CTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACT > NZ_CP025268/1075253‑1075514 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |