| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 1,690,360 | (C)5→6 | pseudogene (1047/1403 nt) | fumC ← | class II fumarate hydratase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 1,690,355 | 1 | . | C | 95.7% | 1109.6 / 40.6 | 345 | pseudogene (1052/1403 nt) | fumC | class II fumarate hydratase |
| Reads supporting (aligned to +/- strand): ref base . (9/6); new base C (135/195); total (144/201) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.82e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 377 total aligned reads displayed.
TTCGCTCACGATTCGGTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑G‑CC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTCCGGGATTGAGATTTCACCA > NZ_CP025268/1690216‑1690489 | tCGCTCACGATTCGGTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAg‑c‑g‑c < 2:2914300/140‑1 (MQ=255) cGCTCACGATTCGGTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑G‑cc < 1:3921523/140‑1 (MQ=255) cGCTCACGATTCGGTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑G‑cc < 2:4275509/140‑1 (MQ=255) cTCACGATTCGGTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑G‑cc‑cc < 1:1610371/140‑1 (MQ=255) cACGATTCGGTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑G‑cc‑cc‑cc < 1:3751290/140‑2 (MQ=255) ggTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGAt > 2:3718644/1‑140 (MQ=255) gTTCAATACCCACTGCGCAGTGTTTATTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATc > 2:4582298/1‑140 (MQ=255) aaTCCCCTCTGCGCAGTGTTTGTTAACACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCCCCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCa < 1:1454751/140‑1 (MQ=255) tACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCAcg < 1:48850/140‑1 (MQ=255) tACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCAcg < 1:332251/140‑1 (MQ=255) tACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCAcg < 1:5121732/140‑1 (MQ=255) cACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCAcgtcgt < 1:2581876/140‑1 (MQ=255) aCTGCGCAGTGTTTGTTAAAACTTTCGATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCAcgtcgct > 1:3043781/1‑138 (MQ=255) aCTGCGCAGTGTTTGTTAAAACTTTCCATGCCCTCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGtt > 2:2443389/1‑140 (MQ=255) aCTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGtt > 2:1946266/1‑140 (MQ=255) aCTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGtt > 2:1760478/1‑140 (MQ=255) aCTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGtt > 1:3380904/1‑140 (MQ=255) aCTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGtt > 2:2777434/1‑140 (MQ=255) aCTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGtt > 2:2840562/1‑140 (MQ=255) aCTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGtt > 1:4199221/1‑140 (MQ=255) aCTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGtt < 2:3014774/140‑1 (MQ=255) tGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTcc > 2:3853410/1‑140 (MQ=255) gcgcAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCACAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTGccc > 2:2263248/1‑140 (MQ=255) gcgcAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTccc < 1:3869612/140‑1 (MQ=255) cgcAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTcccc > 1:4008817/1‑140 (MQ=255) cAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCAt < 2:3442060/140‑1 (MQ=255) tgtttgttAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCAc > 1:5069961/1‑140 (MQ=255) gtttgttAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCAcc > 1:3677819/1‑140 (MQ=255) tttgttAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCt > 1:1336655/1‑140 (MQ=255) tgttAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCCTCACCTGa < 2:2553640/140‑1 (MQ=255) gttAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGAc > 2:1176105/1‑140 (MQ=255) gttAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGAc > 2:2482656/1‑140 (MQ=255) tAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGAcag < 1:2773665/140‑1 (MQ=255) tAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGAcag < 2:647808/140‑1 (MQ=255) tAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGAcag < 2:1836998/140‑1 (MQ=255) aaaCTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGAcagca < 2:4435678/140‑1 (MQ=255) aaaCTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGAcagca < 1:4523754/140‑1 (MQ=255) aaaCTTTCCATGCCAGCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGAATCACCATTGGACTGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGAcagca < 2:4739365/140‑1 (MQ=255) aaCTTTCCATGCCATGTGCCATCAAGCGCACCGATTGCGGGAAATTGTGGATCACCATTGGACGGAAGACGTTGAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGAGCGCCACGTCGTGCCCCATCACCTGAcagcag > 2:4916599/1‑140 (MQ=255) aaCTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGAcagcag > 1:4475309/1‑140 (MQ=255) cTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCagag < 1:669380/140‑1 (MQ=255) tttCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGc < 1:540276/140‑1 (MQ=255) tttCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGc < 2:1214021/140‑1 (MQ=255) tttCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGc < 1:1042764/140‑1 (MQ=255) tttCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGc < 1:2860543/140‑1 (MQ=255) ttCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCa < 1:4047084/140‑1 (MQ=255) ttCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑G‑CC‑CCGCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCa < 1:4944049/140‑1 (MQ=255) ttCCATGCCACCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCa < 2:3741931/140‑1 (MQ=255) tCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGGGCAt < 2:2208706/140‑1 (MQ=255) tCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCAt > 1:2067875/1‑140 (MQ=255) aTGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGt < 1:3997583/140‑1 (MQ=255) aTGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGt < 1:1384249/140‑1 (MQ=255) gCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCACAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCAAGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTa < 1:719843/140‑1 (MQ=255) gCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTa < 2:36597/140‑1 (MQ=255) gCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTa < 1:2138301/140‑1 (MQ=255) gCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTa < 1:219346/140‑1 (MQ=255) gCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTa < 1:1239769/140‑1 (MQ=255) gCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTa < 2:4360541/140‑1 (MQ=255) gCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTa < 1:1975779/140‑1 (MQ=255) gCCAGCTGCCAGCGAGCGCACCGGTTGCAGGTAATTGTGGATCTCCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCC‑C‑CC‑CC‑CCTGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGTGCATGGTTa < 2:1285258/140‑1 (MQ=255) cTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGcc < 1:1539900/140‑1 (MQ=255) cTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGcc < 1:3590781/140‑1 (MQ=255) gCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTc < 2:402980/140‑1 (MQ=255) gCCAGCAAGCGCACCGATTGCAGGAAATTCTGGATCACCATTGGACGGAAGACGTGCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATTGGCACGTCGTTGCCCATCACCTGACAGCAGAGGATGGTTAATGCCTc > 2:576826/1‑140 (MQ=255) aGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTcaca < 1:4741952/140‑1 (MQ=255) aGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTcaca < 1:2470587/140‑1 (MQ=255) aGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTcaca < 1:309458/140‑1 (MQ=255) aGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTcaca < 2:4154111/140‑1 (MQ=255) aGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTcaca < 1:1891758/140‑1 (MQ=255) aGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACtgt < 2:1520589/140‑1 (MQ=255) gcgcACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACtgtg < 2:3135605/140‑1 (MQ=255) cgcACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTgtgt > 2:1632237/1‑140 (MQ=255) cACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTg > 2:2064127/1‑140 (MQ=255) cGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGt < 2:4962097/140‑1 (MQ=255) tGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCAc < 1:1084120/140‑1 (MQ=255) ggAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTc > 1:4310919/1‑140 (MQ=255) ttGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCgg < 2:1656442/140‑1 (MQ=255) ttGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCgg < 2:2962105/140‑1 (MQ=255) gtgGATCACAATTGGACGGAAGACGTTCAGGTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCa < 1:3018864/140‑1 (MQ=255) ggATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAg‑c‑g‑c > 1:605694/1‑48 (MQ=255) gATCACCGTTGGCCGGGAGACGGACAGTTCAAAGTTACCGGAAG‑C‑G‑CCGCC‑CATGTTGTTCGCCGCGTCCTTCCCCCTCACCTGGCAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACGTTCCCCGACATGa < 2:836437/140‑1 (MQ=255) gATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGa < 2:4082433/140‑1 (MQ=255) ggACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGcc < 2:3177845/140‑1 (MQ=255) aaGACGTTCAGTTCAAAGTTACCGGAAG‑CTC‑CC‑CC‑CATGTTTTTCGCCACGTCGTTCCCCATCCCCTGACAGCAGAGCATGGTTAATCCCTCACACTGTGTTGGGTTCACTTTGCCCGGCAGCATTGAGCTGCCCGGCTc > 2:4229781/1‑140 (MQ=255) aaGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTc > 1:990924/1‑140 (MQ=255) aaGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTc > 1:222376/1‑140 (MQ=255) aaGACGTTCAGTTCAAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGCGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTc > 1:5044327/1‑140 (MQ=255) gttcagttcaAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCAtttt > 1:4632582/1‑140 (MQ=255) ttcagttcaAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTc > 1:238067/1‑140 (MQ=255) aacagatcaAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTCAATGCCTCACACTGTGATGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTc > 2:3479641/3‑140 (MQ=255) cagttcaAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTCCg < 1:1749780/140‑1 (MQ=255) gttcaAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTCCggg > 2:1059567/1‑140 (MQ=255) tcaAAGTTACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTCCGGGAt < 1:180184/140‑1 (MQ=255) ttACCGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTCCGGGATTGAGAt < 1:2656814/140‑1 (MQ=255) ccGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTCCGGGATTGAGATTTc > 2:3558598/1‑140 (MQ=255) ccGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTCCGGGATTGAGATTTc > 1:1296446/1‑140 (MQ=255) ccGGAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTAGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGAATGATTGAGCTGCCCGGCTCATTTTCCGGGATTGGGATTTc > 2:3913753/1‑140 (MQ=255) ggAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTCCGGGATTGAGATTTCAc < 1:3145043/140‑1 (MQ=255) ggAAG‑C‑GCCC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTCCGGGATTGAGATTTCAc < 1:441739/140‑1 (MQ=255) aaG‑C‑GCCC‑CC‑CATTTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTCCGGGATTGAGATTTCACCa < 1:3498799/140‑1 (MQ=255) | TTCGCTCACGATTCGGTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAG‑C‑G‑CC‑CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTCCGGGATTGAGATTTCACCA > NZ_CP025268/1690216‑1690489 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |