BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP025268	1,879,869	(C)_5→6	pseudogene (521/821 nt)	nimR ←	DNA‑binding transcriptional regulator NimR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	1,879,864	1	.	C	96.5%	826.6 / 19.8	256	pseudogene (526/821 nt)	nimR	DNA‑binding transcriptional regulator NimR
Reads supporting (aligned to +/- strand): ref base . (4/5); new base C (113/132); total (118/138)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 294 total aligned reads displayed.

CCTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑G‑C‑C‑CCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCTGCGGG  >  NZ_CP025268/1879726‑1879998

ccTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑G‑c                                                                                                                                          >  2:3850622/1‑140 (MQ=255)

ccTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑G‑c                                                                                                                                          >  1:4900373/1‑140 (MQ=255)

ccTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑G‑c                                                                                                                                          >  1:431139/1‑140 (MQ=255)

ccTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑G‑c                                                                                                                                          >  1:4043239/1‑140 (MQ=255)

 cTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑G‑c‑c                                                                                                                                        <  1:1337142/140‑1 (MQ=255)

 cTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑G‑c‑c                                                                                                                                        <  1:661792/140‑1 (MQ=255)

  tttCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑G‑c‑c‑c                                                                                                                                      >  1:3501628/1‑140 (MQ=255)

   ttCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑G‑c‑c‑cc                                                                                                                                     >  2:1832827/1‑140 (MQ=255)

   ttCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑G‑c‑c‑cc                                                                                                                                     >  1:3853462/1‑140 (MQ=255)

    tCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑G‑c‑c‑ccc                                                                                                                                    <  1:414924/140‑1 (MQ=255)

     cACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑G‑c‑c‑cccc                                                                                                                                   >  1:1214116/1‑139 (MQ=255)

     cACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑G‑c‑c‑cccc                                                                                                                                   >  2:824472/1‑139 (MQ=255)

     cACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑G‑c‑c‑cccc                                                                                                                                   >  2:4162195/1‑139 (MQ=255)

     cACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑G‑c‑c‑cccc                                                                                                                                   >  2:2500111/1‑139 (MQ=255)

     cACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑G‑c‑c‑cccc                                                                                                                                   >  2:1900744/1‑139 (MQ=255)

     cACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑G‑c‑c‑cccc                                                                                                                                   >  1:1848149/1‑139 (MQ=255)

     cACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCAAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑G‑c‑c‑cccc                                                                                                                                   >  2:3144923/1‑139 (MQ=255)

      aCTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑G‑c‑c‑cccca                                                                                                                                  <  2:4043239/140‑3 (MQ=255)

           tCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGa                                                                                                                             >  2:4398827/1‑140 (MQ=255)

               tGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAgg                                                                                                                         >  1:2469288/1‑140 (MQ=255)

               tGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAgg                                                                                                                         >  1:1482796/1‑140 (MQ=255)

               tGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAgg                                                                                                                         >  1:4791622/1‑140 (MQ=255)

                gAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAACAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGc                                                                                                                        >  2:4637033/1‑140 (MQ=255)

                 caGCGCCATAATCAGCTGTAACTGCGGACGACACTGGCGAACACTCAACCCGGTCTCTTTTACTCTCAGTCGGGCAAGATTGCGTTCACTCAGCGCAAAAAAGCCCGCCCATGGCCCCAAG‑G‑CTC‑CCC‑TCGCGACGGGcc                                                                                                                       <  2:2545637/139‑1 (MQ=255)

                 aaGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGcc                                                                                                                       <  2:2441978/140‑1 (MQ=255)

                  aGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGccc                                                                                                                      >  1:2289118/1‑140 (MQ=255)

                    cgcCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCTCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCtt                                                                                                                    >  1:4172906/1‑140 (MQ=255)

                    cgcAATAATCAGCGGTAACTGCTGACGCCACTGGCGAAAACCCAACCCCGTCTGTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATTGCAAAAAAGCCAGCCCATTGCCCCAAT‑T‑CAC‑CCC‑ACTCGACAGGCCCtt                                                                                                                    >  2:4808525/1‑140 (MQ=255)

                      ccATAATCCGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCGCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTCCACTCCTCGCCAAAAAGCCAGCCCATTGCCCCACT‑G‑CGC‑CCC‑ACTCGACAGGCCCtttt                                                                                                                  >  2:2151664/1‑139 (MQ=255)

                      ccATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTc                                                                                                                  >  1:1692873/1‑140 (MQ=255)

                      ccATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTc                                                                                                                  >  2:1515421/1‑140 (MQ=255)

                      ccATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTc                                                                                                                  >  1:400477/1‑140 (MQ=255)

                         tAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGcc                                                                                                               <  1:2022849/140‑1 (MQ=255)

                         tAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGcc                                                                                                               >  1:2211110/1‑140 (MQ=255)

                         tAACCAGCTGTAACTGCTGCCCCCACTGGCGAAAACTCAGCCCCGTCTCTTCTACTATCCGTCGGCCCAGATTGCCTTCTTTCACCGCATAACCGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑CCTCGACAGGCCCTTTCGcc                                                                                                               <  2:577479/140‑1 (MQ=255)

                          caTCCGCTGTAACTGCTGACGCCACTGGCTAAAACTCAACCCCGTCTCCTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCca                                                                                                              <  2:3227232/139‑1 (MQ=255)

                          aaTCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCca                                                                                                              <  1:39057/140‑1 (MQ=255)

                          aaTCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCca                                                                                                              <  2:1710595/140‑1 (MQ=255)

                            tccgccgTAACTGCTGACGCCACCGGCGAAAACTCAAGCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCcatc                                                                                                            <  1:2781623/134‑1 (MQ=255)

                            tCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCcatc                                                                                                            <  2:1122672/140‑1 (MQ=255)

                            tCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCcatc                                                                                                            <  1:76165/140‑1 (MQ=255)

                            tCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCcatc                                                                                                            <  1:4633300/140‑1 (MQ=255)

                            tCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCcatc                                                                                                            <  2:2211110/140‑1 (MQ=255)

                              aGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCcatcat                                                                                                          <  1:3419280/140‑1 (MQ=255)

                                cTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCCATCAtct                                                                                                        >  1:1418622/1‑140 (MQ=255)

                                   tAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCCATCATCTcca                                                                                                     >  1:4501657/1‑140 (MQ=255)

                                   tAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTGTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCCATCATCTcca                                                                                                     >  1:158106/1‑140 (MQ=255)

                                          tgACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCCATCCTCTCCACCATCGt                                                                                              >  1:1730003/1‑140 (MQ=255)

                                          tgACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGt                                                                                              >  2:3103520/1‑140 (MQ=255)

                                          tgACGCCACTGGCGAAAACTCAACCCCGTCTCTTGTACTCTAAGTCGGGAAAGATTGCGGTCACTCATCGCAAAAAAGCCAGCCCATTGCCCAAATGG‑C‑C‑TGC‑ACTCGGCAGGCCCTTTCGCCATCATCTCCCCCTTCGt                                                                                              >  2:2905566/1‑140 (MQ=255)

                                           gACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTg                                                                                             <  1:4443086/140‑1 (MQ=255)

                                           gACGCCACGGGCGAAAACTCCACTCCGTCTCTTTTACTCTCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTg                                                                                             <  2:1952400/140‑1 (MQ=255)

                                             cGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGGCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑CCTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCg                                                                                           <  1:30495/140‑1 (MQ=255)

                                                   tGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGAtttt                                                                                     >  1:1904624/1‑140 (MQ=255)

                                                      cGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAgg                                                                                  <  2:3784918/140‑1 (MQ=255)

                                                        aaaaCTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGAt                                                                                >  1:239881/1‑140 (MQ=255)

                                                               aaCCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGagaaga                                                                         >  2:4967430/1‑140 (MQ=255)

                                                               aaCCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGagaaga                                                                         >  2:3712793/1‑140 (MQ=255)

                                                               aaCCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGagaaga                                                                         >  1:3119459/1‑140 (MQ=255)

                                                                aCCCCGTCTCTTTTACTATCAGGCGGGCAAGATTCCGGTCACTCATCGCAGAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAgaagaa                                                                        <  2:1250873/140‑1 (MQ=255)

                                                                      tctcTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACggg                                                                   <  1:583737/139‑1 (MQ=255)

                                                                      tctcTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGc                                                                  <  2:1688741/140‑1 (MQ=255)

                                                                      tctcTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGc                                                                  <  1:4876052/140‑1 (MQ=255)

                                                                      tctcTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGc                                                                  <  1:2728510/140‑1 (MQ=255)

                                                                      tctcTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGc                                                                  <  1:877208/140‑1 (MQ=255)

                                                                         ctTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAgg                                                               <  2:1925213/140‑1 (MQ=255)

                                                                          ttttACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGt                                                              <  2:2285703/140‑1 (MQ=255)

                                                                           tttACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTg                                                             >  2:1094284/1‑140 (MQ=255)

                                                                            ttACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGc                                                            <  1:770595/140‑1 (MQ=255)

                                                                                  tCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGTCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgt                                                      >  1:1790547/1‑140 (MQ=255)

                                                                                  tCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgt                                                      >  1:4978042/1‑140 (MQ=255)

                                                                                  tCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgt                                                      >  1:643487/1‑140 (MQ=255)

                                                                                    aGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCCGGTGCAGCtgttg                                                    >  1:3235691/1‑140 (MQ=255)

                                                                                    aGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgttg                                                    >  1:4233035/1‑140 (MQ=255)

                                                                                    aGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgttg                                                    >  2:4536474/1‑140 (MQ=255)

                                                                                     gTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgttgt                                                   <  2:642381/140‑1 (MQ=255)

                                                                                      tCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgttgtt                                                  >  2:1300925/1‑140 (MQ=255)

                                                                                         ggCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTtgtg                                               >  1:1032100/1‑140 (MQ=255)

                                                                                         ggCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTtgtg                                               >  1:977485/1‑140 (MQ=255)

                                                                                           cAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGgc                                             <  2:4831226/140‑1 (MQ=255)

                                                                                           cAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGgc                                             <  2:1338273/140‑1 (MQ=255)

                                                                                           cAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGgc                                             <  2:15346/140‑1 (MQ=255)

                                                                                           cAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGgc                                             <  2:2374950/140‑1 (MQ=255)

                                                                                               aTTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGGGCGGATCTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGgctgct                                         >  2:2682079/1‑140 (MQ=255)

                                                                                                 tGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGGCAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGa                                       <  1:2958533/140‑1 (MQ=255)

                                                                                                   cgtcaaCTCATCGCAAAAAAGCCTGCCCATTGCCCCATT‑G‑C‑CACCC‑ACTCGCCAGGCCCTTTCGCCATCATCTCCACCCTCGTGCGGCTTTTAGGCTGAGAAGAAACGGGTAGGTGCAGCTGTTCTTGTGGCTGCTGAgg                                     <  2:1942208/135‑1 (MQ=255)

                                                                                                    gTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAggg                                    >  1:1934192/1‑140 (MQ=255)

                                                                                                    gTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAggg                                    >  1:3303427/1‑140 (MQ=255)

                                                                                                           cATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTtcat                             >  2:217768/1‑140 (MQ=255)

                                                                                                           cATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTtcat                             <  2:400477/140‑1 (MQ=255)

                                                                                                           cATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTtcat                             <  2:2802547/140‑1 (MQ=255)

                                                                                                             tCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTtcatca                           >  1:3686915/1‑140 (MQ=255)

                                                                                                                     aaGCCAGCCCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGAc                   <  2:3451590/140‑1 (MQ=255)

                                                                                                                     aaGACAGCCCATTGCTCCAAT‑G‑C‑C‑CCCAACTCGACAGGCCCTTTCGCCATCATCACCACCATCGTGCGGGCTTTAGGATGAGATGAAACGGGCACGTGGAGCTGTTGTTGTGGCTGCGAAGGGAGATCATCAAACAggtc                   <  2:3539490/140‑3 (MQ=255)

                                                                                                                           gccCATTGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAAt             >  2:3680767/1‑140 (MQ=255)

                                                                                                                                 tGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCt       >  2:3347061/1‑140 (MQ=255)

                                                                                                                                 tGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCt       >  1:3614691/1‑140 (MQ=255)

                                                                                                                                 tGCCCCAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCt       >  2:2513673/1‑140 (MQ=255)

                                                                                                                                     ccAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCTGCgg   <  1:2492873/140‑1 (MQ=255)

                                                                                                                                      cAAT‑GCC‑C‑CCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCTGCggg  >  2:2334685/1‑140 (MQ=255)

CCTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑G‑C‑C‑CCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCTGCGGG  >  NZ_CP025268/1879726‑1879998

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`