| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 2,204,490 | (A)7→8 | pseudogene (175/3632 nt) | CXP41_RS11705 → | DUF4132 domain‑containing protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 2,204,483 | 1 | . | A | 94.1% | 985.6 / 44.6 | 276 | pseudogene (168/3632 nt) | CXP41_RS11705 | DUF4132 domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base . (7/9); new base A (120/137); total (128/148) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 285 total aligned reads displayed.
GCCCAACTGGAACTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAG‑A‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGGCGGCGCTAGCCTGTATCGCG > NZ_CP025268/2204349‑2204617 | gCCCAACTGGAACTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAG‑a‑a‑a‑a‑a < 1:3536825/140‑1 (MQ=255) aCTGGAACTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAG‑a‑a‑a‑a‑aaaaca < 2:3416544/140‑4 (MQ=255) aaCTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTc > 2:1488950/1‑140 (MQ=255) aaCTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTc > 2:4119441/1‑140 (MQ=255) aaCTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTc > 1:3354062/1‑140 (MQ=255) aCTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCt > 1:2264043/1‑140 (MQ=255) aaaTATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCg > 1:2473146/1‑140 (MQ=255) ataAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGAGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTAt < 1:4019295/140‑1 (MQ=255) taAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATg > 2:2788034/1‑140 (MQ=255) taAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATg > 2:4313201/1‑140 (MQ=255) gCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTCTCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACACAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAAtttt > 1:3499081/1‑140 (MQ=255) gCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAAtttt > 1:2643450/1‑140 (MQ=255) aaaaCGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTCTGAGAATTTTTc > 1:4445998/1‑140 (MQ=255) cgcTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAg < 1:4194667/140‑1 (MQ=255) cgcTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAg < 2:2597846/140‑1 (MQ=255) cgcTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAg < 1:2798405/140‑1 (MQ=255) tCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTgg < 1:4985735/140‑1 (MQ=255) tCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTgg < 1:1004204/140‑1 (MQ=255) cctCAGCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAGGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCa < 2:3311060/138‑1 (MQ=255) agccATCGTCGCTGGCCGGGAGAACCAGTGTACGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACCTTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCa < 2:725667/137‑1 (MQ=255) cATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTc < 1:966767/140‑1 (MQ=255) cATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTc < 1:4848243/140‑1 (MQ=255) cATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTc < 1:2787925/140‑1 (MQ=255) gtcgCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGcc > 1:3733389/1‑140 (MQ=255) gCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATc > 1:4222239/1‑140 (MQ=255) gCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATc > 2:704699/1‑140 (MQ=255) tGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCAc > 2:1065098/1‑140 (MQ=255) cggCCGGGCGAACCAGTGTCTGTTACCACTGGAAGTCTCATCGAGACATTGCGTTTTGAATTGCTACAAAAAGCTGAGGAG‑A‑A‑A‑AGAAACATTGTCTGGCGTAATGAGAATTGTGCAGTGGAGTGGAAGTCCTCCATCAc > 2:635898/2‑140 (MQ=255) gCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGc < 1:549416/140‑1 (MQ=255) ggtgtaaCCAATTTCCGCTATCACAAGAAGTGTCAACCAGACATTGGGTGACGAAATGTGAGAAGAAGCTGAGAAGAA‑A‑A‑A‑AAACATGATATGGCGTTATGAGAATTTTTCAGTAGAGTGGCAGTCCGACATCACGCAgg < 2:1671369/135‑1 (MQ=255) gCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGcc > 2:2090056/1‑140 (MQ=255) gCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGcc > 1:3270629/1‑140 (MQ=255) gCGAACCAGTGTCCGTTATCACTGGAAGTCGCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGGGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCCGTCCGCCATCACGCAGGcc > 2:4766258/1‑140 (MQ=255) gCGAAACAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGcc < 1:1372146/140‑1 (MQ=255) ccAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCaa > 1:2300572/1‑140 (MQ=255) gtCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGTCCATCAACTTGa > 1:3145395/1‑140 (MQ=255) gtCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCACCTTGa > 2:4488747/1‑140 (MQ=255) gtCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGa > 2:24613/1‑140 (MQ=255) cGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAG‑A‑A‑ACA‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCg > 1:501073/1‑140 (MQ=255) ttATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGc < 2:2347700/140‑1 (MQ=255) tATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCg < 1:761640/140‑1 (MQ=255) cTGGAAGTCTCATCCTGACATTGGGTGATGAATTGCTACAAACAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAacac > 2:4888945/1‑140 (MQ=255) tGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAAcaca < 2:3460569/140‑1 (MQ=255) tGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAAcaca < 2:1409828/140‑1 (MQ=255) ggAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACaa > 1:3924063/1‑140 (MQ=255) ggAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACaa > 2:2875735/1‑140 (MQ=255) ggAAGTCTCAGCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGCAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGCGAATTTTTCACTGGCGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACaa < 2:3075490/140‑1 (MQ=255) gAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACaaa > 1:3398187/1‑140 (MQ=255) gTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAAccc > 2:2045404/1‑140 (MQ=255) tctcATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACCTTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCt < 1:1598718/140‑1 (MQ=255) tctcATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCt > 1:691693/1‑140 (MQ=255) tctcATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGGCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTGCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAAcctt > 2:4276194/1‑138 (MQ=255) tcATCCAGACATTGGGTGATGAATTGCTACAAAAAACTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGAGCGGCGAACACAAACCCTCa > 2:1279137/1‑140 (MQ=255) tcATCCAGACATTGGGTGAGGAATTGCTACAAAAAGCTGAGAAG‑A‑AGA‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCa > 1:3580187/1‑140 (MQ=255) aTCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACCAACCCTCAAt > 2:1196514/1‑140 (MQ=255) tCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATc < 1:1548723/140‑1 (MQ=255) tCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATc < 2:794750/140‑1 (MQ=255) ccAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATcc < 1:3041921/140‑1 (MQ=255) aCATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATcccggc > 1:36076/1‑140 (MQ=255) aCATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATcccggc > 2:3497714/1‑140 (MQ=255) aCATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATcccggc > 2:22791/1‑140 (MQ=255) aTTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACGCTCAATcccggccc > 2:1975725/1‑140 (MQ=255) tGGGTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATcccggcccgg > 1:110447/1‑140 (MQ=255) tGGGTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATcccggcccgg > 1:4562713/1‑140 (MQ=255) tGGGTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATcccggcccgg > 1:3102595/1‑140 (MQ=255) ggTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGAc > 2:863997/1‑140 (MQ=255) ggTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGAc < 2:592756/140‑1 (MQ=255) ggTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAATCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGAc > 2:2984301/1‑140 (MQ=255) ggTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAAAATTGTCTGGCGTTACGAGACTTTTTCACTGTACTGGCAGTCCGCCGTCACGCAGGCCATCAACGTGATCGGCGAACACAAACCCTCAATCCCGTCCCGGAc > 2:382352/1‑140 (MQ=255) gTGATGAATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACa < 1:1442429/140‑1 (MQ=255) atgaATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATg > 1:1302653/1‑140 (MQ=255) atgaATTGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATg > 1:1898497/1‑140 (MQ=255) tcgtACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 2:3198664/137‑1 (MQ=255) tGCTACAAAACGCTGAGAAG‑A‑ACA‑A‑AACCATAGTATAGAGATATGAGAATTTTTCACTGACGTGGCAGACCCCCCTCACCCAGACCATCAACTTGACCGCCGAACAAAAACCCTCACTCCCGGCAAGGACAATGgcggcg < 2:1345677/140‑1 (MQ=255) tGCTACAAAAAGCTGCGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 2:4076277/140‑1 (MQ=255) tGCTACAAAAAGCTGAGACG‑ACA‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:1531898/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGTCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 2:4549934/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGTTCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:4947654/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAACCCCTCAATCCCGGCCCGGACAATGgcggcg < 2:3561218/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:1237065/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:370039/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:3962689/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:311985/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:858892/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:216207/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:3648569/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:4277279/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 2:4970003/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:4313201/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:466408/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCACCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 2:4326451/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGCCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 2:2104566/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCACGCCATCAACTTGAGCGGCGAACACAACCCCTCAATCCCGGCCCGGACAATGgcggcg < 1:3497714/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGCAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:4077343/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTCGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:4261471/140‑1 (MQ=255) tGCTAAAAAAAGCTGAGAAG‑A‑A‑ATA‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGGGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:1751166/140‑1 (MQ=255) cTACAAAAAGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGGCGGCGCt > 2:770823/1‑140 (MQ=255) aaaaGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGGCGGCGCTAGCCt > 2:185495/1‑140 (MQ=255) aaaaGCTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGGCGGCGCTAGCCt > 2:1787180/1‑140 (MQ=255) cTGAGAAGAA‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGCCAATGGCGGCGCTAGCCTGTATc > 1:2345381/1‑140 (MQ=255) | GCCCAACTGGAACTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAG‑A‑A‑A‑A‑AAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGGCGGCGCTAGCCTGTATCGCG > NZ_CP025268/2204349‑2204617 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |