| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 3,509,139 | +C | pseudogene (137/878 nt) | php ← | phosphotriesterase‑related protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 3,509,136 | 1 | . | C | 96.5% | 1186.0 / 32.8 | 368 | pseudogene (140/878 nt) | php | phosphotriesterase‑related protein |
| Reads supporting (aligned to +/- strand): ref base . (7/6); new base C (168/186); total (175/193) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.80e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 411 total aligned reads displayed.
CACATGTTCCGGGAAAAACGCGTCCTGGTAATAACCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACG‑CC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAGGGTGTAACCCGTCGGATCAAAA > NZ_CP025268/3508998‑3509270 | cacaTGTTCCGGGAAAAACGCGTCCTGGTAATAACCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTacgcacg‑c > 2:1889291/1‑140 (MQ=255)cacaTGTTCCGGGAAAAACGCGTCCTGGTAATAACCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTacgcacg‑c < 1:732588/140‑1 (MQ=255)cacaTGTTCCGGGAAAAACGCGTCCTGGTAATAACCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTacgcacg‑c > 1:1844314/1‑140 (MQ=255)cacaTGTTCCGGGAAAAACGCGTCCTGGTAATAACCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGGCATCTCAATCACATTacgcacg‑c > 1:4093019/1‑140 (MQ=255) aTGTTCCGGGAAACACGCGTCCTGGTAATAACCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACCTTACGCACG‑cc‑cc < 2:1818622/140‑2 (MQ=255) gTTCCGGGAAAAACGCGTCCTGGTAATAACCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACG‑cc‑ccgg > 1:3819927/1‑137 (MQ=255) gTTCCGGGAAAAACGCGTCCTGGTAATAACCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACG‑cc‑ccga > 1:4507443/1‑137 (MQ=255) tCCGGGAAAAACGCGTCCTGGTAATAACCGGTACAGGCCACCACGTTGATCCCCGTCTCACGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACG‑CC‑C‑cgggt > 2:3965374/1‑138 (MQ=255) gggAAAAACGCGTCCTGGTAATAACCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGtcat > 1:603310/1‑140 (MQ=255) aaaaCGCGTCCTGGTAATAACCGGTACAGGCCACCACGTTGATCCCCGTCTCGCACATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAgg < 1:386672/140‑1 (MQ=255) ggTAATAACCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTcc < 1:2284671/140‑1 (MQ=255) gTAATAACCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCt > 1:2405989/1‑140 (MQ=255) aataaCCGGTACAGGCCCCCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTgg < 1:4267470/140‑1 (MQ=255) aataaCCGGTACAGGCCACCACGTTGAGCCCCGTCTCCCGCATTACATCAAGCAGAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGACC‑G‑GGGTCATCAGGTCGTTCATCTCCTgg < 1:1191375/140‑1 (MQ=255) aCCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCaaa < 1:1917783/140‑1 (MQ=255) aCCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCaaa < 2:563911/140‑1 (MQ=255) aCCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCaaa < 1:2470810/140‑1 (MQ=255) aCCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCaaa < 2:219237/140‑1 (MQ=255) aCCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCaaa < 2:210050/140‑1 (MQ=255) aCCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCaaa < 1:3710048/140‑1 (MQ=255) aCCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCaaa < 1:3370336/140‑1 (MQ=255) aCCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCaaa < 2:1447182/140‑1 (MQ=255) cGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATg < 2:4850575/140‑1 (MQ=255) gTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGaa > 2:2978708/1‑140 (MQ=255) gTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGaa > 1:3534300/1‑140 (MQ=255) tACAGGCCACCACGTTGATCCCCGTCTCGCGCGTTACATCAAGCATACATTGCGCATTGCGCCCCCTGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAAc > 2:795555/1‑140 (MQ=255) tACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAAc < 2:2460643/140‑1 (MQ=255) tACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAAc < 1:4839167/140‑1 (MQ=255) gCCACCTCGTTGATCCCGGTCTCGCGCATTACATCGACCATAACTTGCGGATTGCGCCCCATGTAACGGTTTGTCATCTCAGTCACACTACGCACGCCC‑C‑GGATCATCCGGTCGGTCAGCTCCTGGCAAATGAACGCATa < 2:1089519/140‑1 (MQ=255) gCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTTATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATa < 1:4055673/140‑1 (MQ=255) gCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATa < 2:1711013/140‑1 (MQ=255) gCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATa > 2:1061396/1‑140 (MQ=255) gCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATa < 2:5098328/140‑1 (MQ=255) gCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATa < 1:4196968/140‑1 (MQ=255) gCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATa > 1:468086/1‑140 (MQ=255) caccacGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAGCGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACt > 1:3152534/1‑140 (MQ=255) caccacGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGTACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACt > 2:4091437/1‑140 (MQ=255) cacGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACttag > 1:1569622/1‑137 (MQ=255) cacGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACG‑CC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATc > 2:369969/1‑140 (MQ=255) cacGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCACATGTAACGGTTGGTCATCGCAATCACATTACGCACG‑CCGC‑GGGTACTCAGGTCGTTCATCTCCTGGAAAATGAACGGATACTGAt > 2:3312512/1‑140 (MQ=255) tGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAgg > 2:2280753/1‑140 (MQ=255) tGATCCCCGGCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAgg > 2:2812734/1‑140 (MQ=255) aTCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAggcg > 1:3130666/1‑140 (MQ=255) aTCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAggcg > 2:3455537/1‑140 (MQ=255) tctcGCGCATTACATCCAGCATAAATTGTGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTcc > 2:2564475/1‑140 (MQ=255) tctcGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGCTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCCTACTTATAAAGGCGGCAGTcc > 2:2367893/1‑140 (MQ=255) cgcgCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACg < 2:3787367/140‑1 (MQ=255) cgcATTACATCAAGCATACATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACgtt < 2:1763335/140‑1 (MQ=255) cgcATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACgtt > 2:2043755/1‑140 (MQ=255) cgcATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACgtt > 2:2686846/1‑140 (MQ=255) cgcATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAAAGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCCGCAGTCCACgtt < 2:5058988/140‑1 (MQ=255) cATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACgttgt > 1:4365711/1‑140 (MQ=255) cAACCATAAATTGCGCCTTGCGCCCCCGGTAACGGTTGGTCATCTCAATCACCTTCCGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCCTACTGATCAAGGCGGCAGTCCACGTTGTCTTTAAAg < 2:2247941/140‑1 (MQ=255) gCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCg < 1:2680525/140‑1 (MQ=255) cATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCgg < 1:1005054/140‑1 (MQ=255) cATAAATTACTCATTGCGCCCCATGTAACGGTGGGTCATCTCCATTACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCgg < 2:3419829/140‑1 (MQ=255) aTAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCCTCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGga < 2:289047/140‑1 (MQ=255) aTAAATTGCGCATTGCGCCCCATGTAACGGTTCGTCATCTCAATCACATTACGCACGCCC‑C‑GGCTTATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGga < 2:3680237/140‑1 (MQ=255) aTAAATTGCGCATTGCACCCCATGTAACGGTTGGTCATCTCACTCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGga < 2:431040/140‑1 (MQ=255) aaaTTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGgaga < 1:1357907/140‑1 (MQ=255) aaaGTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCATGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCTgaga < 2:4724978/140‑1 (MQ=255) ttgcgcattgcgcCCCGTGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGAt < 1:2820945/140‑1 (MQ=255) ttgcgcattgcgcCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATAGTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGAt < 2:4678284/140‑1 (MQ=255) ttgcgcattgcgcCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGAt < 1:3965374/140‑1 (MQ=255) gcgcattgcgcCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCa < 1:1975048/140‑1 (MQ=255) cgcattgcgcCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCaa > 2:4179810/1‑140 (MQ=255) cgcattgcgcCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCaa > 2:1321899/1‑140 (MQ=255) tcattgcgcCCCATGTAACGGTTGGGGATCTCAATCAGATTACGCGCGCCC‑C‑GGGTCAGCAGGTCGTTCATCTCTTGGCAAATGAACGCATACTGATCAAGGCGTCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAat > 2:3373888/2‑140 (MQ=255) gcattgcgcCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAat > 1:2214241/1‑140 (MQ=255) ttgcgcCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATg < 1:168168/140‑1 (MQ=255) tgcgcCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTACAGCCGGAGAGCTCAATATGc > 1:3404246/1‑140 (MQ=255) cgcCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAg < 1:3274182/140‑1 (MQ=255) cgcCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAg < 1:867206/140‑1 (MQ=255) gcCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGa < 2:2619758/140‑1 (MQ=255) gcCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGa < 1:2589346/140‑1 (MQ=255) ccccATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGAt < 2:1211525/140‑1 (MQ=255) cGGTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGCTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGc > 1:4945196/1‑140 (MQ=255) ggttatccATCTCACTCGCTTTACGATCC‑CC‑CTGGGTCTTGAGGTTGTTGTGCTGCTGGCAAATGATCGCGTAATGATCAAGGCGGGAGTGGACGTTGTTTTCGAAGCTGGGGAGATCAATATGCAGATGCTCATGGGCg < 2:1003054/133‑1 (MQ=255) ggTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCg < 1:3689448/140‑1 (MQ=255) ggTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCg < 2:892560/140‑1 (MQ=255) ggTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCg < 2:35531/140‑1 (MQ=255) ggTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCg < 2:3046485/140‑1 (MQ=255) ggTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGGCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCg < 1:2859756/140‑1 (MQ=255) ggTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGATCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCg < 2:4375607/140‑1 (MQ=255) gTTGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGa < 2:3163637/140‑1 (MQ=255) ttGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAAc > 1:3583304/1‑66 (MQ=255) ttGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTTTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAg > 1:4322165/1‑140 (MQ=255) ttGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAg > 2:1598502/1‑140 (MQ=255) tGGTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAgg < 1:852051/140‑1 (MQ=255) ggTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCACATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCGTGGGCGAggg > 1:1711316/1‑140 (MQ=255) ggTCATCTCAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAggg > 2:3253039/1‑140 (MQ=255) ctcAATCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAGGGTGTAAc > 1:2943170/1‑140 (MQ=255) aTCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAGGGTGTAACCCGt < 1:980891/140‑1 (MQ=255) aTCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAGGGTGTAACCCGt < 1:5021730/140‑1 (MQ=255) aTCACATTACGCACGCCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAGGGTGTAACCCGt < 2:4981507/140‑1 (MQ=255) acgcacgcCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAGGGTGTAACCCGTCGGATCaa < 1:652551/140‑1 (MQ=255) acgcacgcCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAGGGTGTAACCCGTCGGATCaa < 1:3429325/140‑1 (MQ=255) acgcacgcCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGCAGAGATCAATATGCAGATGCTCATGGGGGAGGGTGTAACCCGTCGGATCaa < 1:3060873/140‑1 (MQ=255) cgcacgcCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAGGGTGTAACCCGTCGGATCaaa > 2:1542340/1‑140 (MQ=255) cgcacgcCC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAGGGTGTAACCCGTCGGATCaaa > 1:2170454/1‑140 (MQ=255) | CACATGTTCCGGGAAAAACGCGTCCTGGTAATAACCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACG‑CC‑C‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAGGGTGTAACCCGTCGGATCAAAA > NZ_CP025268/3508998‑3509270 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |