| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 3,864,439 | +C | pseudogene (1083/1613 nt) | CXP41_RS20140 ← | PTS sugar transporter subunit IIB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 3,864,437 | 1 | . | C | 97.2% | 1027.6 / 21.0 | 317 | pseudogene (1085/1613 nt) | CXP41_RS20140 | PTS sugar transporter subunit IIB |
| Reads supporting (aligned to +/- strand): ref base . (7/2); new base C (149/159); total (156/161) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.97e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 356 total aligned reads displayed.
GCAGAATCAGTGTGCGG‑AAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑C‑C‑ATGTT‑‑‑CACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATG > NZ_CP025268/3864298‑3864568 | gCAGAATCAGTGTGCGG‑AAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCg < 2:2519609/140‑1 (MQ=255) cAGAATCAGTGTGCGG‑AAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACATCCG‑c > 1:4088527/1‑140 (MQ=255) aaTCAGTGTGCGG‑AAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCG‑c‑cca < 1:3167974/140‑3 (MQ=255) tCAGTGTGCGG‑AAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCG‑c‑ccatg < 2:2929585/140‑5 (MQ=255) tCAGTGTGCGG‑AAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCG‑c‑ccatg > 2:1369255/1‑136 (MQ=255) tCAGTGTGCGG‑AAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCG‑c‑ccatg < 1:2373740/140‑5 (MQ=255) tCAGTGTGCGG‑AAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCG‑c‑ccatg > 1:793359/1‑136 (MQ=255) tCAGTGTGCGG‑AAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGGAAAACCTAGTCAATCAGACCTCCG‑c‑ccatt > 2:4267622/1‑136 (MQ=255) tCAGTGTGCGG‑AAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGAGTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCG‑c‑ccatg > 1:1312523/1‑136 (MQ=255) aGTGTGCGG‑AAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGAATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGtt < 2:4973354/140‑1 (MQ=255) gtgtGCGG‑AAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTg > 1:2181979‑M1/1‑139 (MQ=255) gtgCGGAAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCACCGCC‑C‑ATGTTgc > 2:4732959‑M1/1‑138 (MQ=255) gtgCGG‑AAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcc > 2:2807278‑M1/1‑137 (MQ=255) gtgCGG‑AAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcc > 2:3499282‑M1/1‑137 (MQ=255) gtgCGG‑AAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCG‑c < 1:2095410/130‑1 (MQ=255) gtgCGG‑AAAACCACGAAGTACAGCAGGGGAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcc > 1:3757293‑M1/1‑137 (MQ=255) gCGG‑AAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGCTCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgccca < 1:3073958‑M1/140‑6 (MQ=255) gCGG‑AAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGAATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgccca < 2:3845426‑M1/140‑6 (MQ=255) cGG‑AAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccac < 2:2224371‑M1/140‑7 (MQ=255) cGG‑AAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCG‑c < 1:173965/127‑1 (MQ=255) aCCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCTGCC‑C‑ATCTTgcccaccacacc > 2:729473‑M1/1‑128 (MQ=255) ccACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacacca < 1:5015287‑M1/140‑14 (MQ=255) ccACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACAGCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacacca < 1:3581558‑M1/140‑14 (MQ=255) cACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaa > 1:3839617‑M1/1‑126 (MQ=255) cACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaa > 1:4403196‑M1/1‑126 (MQ=255) cGAAGTCCAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaag < 2:1128287‑M1/140‑17 (MQ=255) gAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaaga > 2:83721‑M1/1‑123 (MQ=255) aaGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑CTGTTgcccaccacaccaaagag < 1:3894233‑M1/140‑19 (MQ=255) aGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagaga < 2:2981920‑M1/140‑20 (MQ=255) aGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagaga < 1:1872631‑M1/140‑20 (MQ=255) ggTTAAGCACAACCTAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTATTGCGGTGAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGCTccccacaacaccaaagcgatacattacgg > 2:4164385‑M1/1‑111 (MQ=255) ggTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacgg > 2:1183307‑M1/1‑111 (MQ=255) ggTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacgg > 2:3190394‑M1/1‑111 (MQ=255) ggTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacgg > 1:2880964‑M1/1‑111 (MQ=255) gTACAGCACAACGCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGCTCCAGTATTGCGGTACAACCTAGTCAATCAGACCACCG‑C‑CAAAGTTgcccaacacacccaagggatacattacggc < 2:303788‑M1/140‑31 (MQ=255) tAAAGCACCACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtc < 1:654525‑M1/140‑32 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtc > 1:4016950‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtc > 1:3618684‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtc < 2:1562420‑M1/140‑32 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtc < 2:4141372‑M1/140‑32 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtc > 2:3838528‑M1/1‑109 (MQ=255) aGCACAACCCAATGGCGCTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgac > 2:2428897‑M1/1‑106 (MQ=255) aGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgac > 2:3401768‑M1/1‑106 (MQ=255) aGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgac > 1:3360148‑M1/1‑106 (MQ=255) aGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgac > 2:1814236‑M1/1‑106 (MQ=255) aGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTCGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgac > 2:4307965‑M1/1‑106 (MQ=255) aGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACAGCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgac > 1:1013867‑M1/1‑106 (MQ=255) cacaACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacacccaagagatacattacggtcgacat > 2:3017280‑M1/1‑104 (MQ=255) aaCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacatttg > 2:3277223‑M1/1‑101 (MQ=255) aaCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattga > 1:2468400‑M1/1‑101 (MQ=255) aaccAATGGCGATTTGGGTCAGCATCTTAACCGCGTGGTTGCTGAACATCGGGATCCACTTTTGCGGTCAAGCCTAGTCAATCGGACCTCCGCC‑C‑ATGTTGCCCACCACACCACAGAGATACATTACGGTCGACATTGAg < 2:4713590/138‑1 (MQ=255) aCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgag < 2:2583822‑M1/140‑41 (MQ=255) aCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgag < 2:1045936‑M1/140‑41 (MQ=255) aCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgag < 1:1507653‑M1/140‑41 (MQ=255) aCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgag < 1:4958041‑M1/140‑41 (MQ=255) cccAATGGCGATTTGGGTCAGCCTCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgagg > 1:519664‑M1/1‑99 (MQ=255) cccAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgagg > 1:2616761‑M1/1‑99 (MQ=255) tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgcc > 2:1408577‑M1/1‑94 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 1:2706864‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 2:788058‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 2:2076429‑M1/140‑50 (MQ=255) aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcac > 1:1604690‑M1/1‑89 (MQ=255) aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcac > 1:871195‑M1/1‑89 (MQ=255) aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcac > 1:4861883‑M1/1‑89 (MQ=255) aTTTGCGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCGG‑CGC‑ATGGGgcgcaccacacgatagagatccattacggtcgacattgaggccgccagcac > 2:1191783‑M1/1‑89 (MQ=255) ttttgttcagcatCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccgaagagatacattacggtcgacattgaggccgccagcacg < 2:2635092‑M1/134‑53 (MQ=255) tttGGGTCAGCATCATATCCGCGTGGTTGTTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacg < 1:2979542‑M1/140‑53 (MQ=255) tttGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacgccaaagagatacattacggtcgacattgaggccgccagcacg < 2:3819461‑M1/140‑53 (MQ=255) tttGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacg > 1:1647049‑M1/1‑88 (MQ=255) tGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggc < 1:4717180‑M1/140‑55 (MQ=255) tGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATACAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggc > 2:596542‑M1/1‑86 (MQ=255) gCATCATATCCGCGTGGTTGCTGAACATCGGGATACAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtacc < 1:945531‑M1/140‑62 (MQ=255) catcatATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccg > 1:3696426‑M1/1‑78 (MQ=255) atatCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccac < 1:4217258‑M1/80‑7 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaa > 2:1265434‑M1/1‑68 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaa > 2:4866629‑M1/1‑68 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaa > 2:2102802‑M1/1‑68 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaa > 1:4798768‑M1/1‑68 (MQ=255) cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaac > 1:2128487‑M1/1‑67 (MQ=255) gTGGTTGCTGAACATCGGGATCCAGCTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcacacagcaacg > 1:3513471‑M1/1‑66 (MQ=255) tGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacgg > 1:2022469‑M1/1‑65 (MQ=255) gTTGCTGAACATCGGGATCCTGTTTTGCGGTAAGACCTAGTCAATCAGGCCTCCGCC‑C‑ATGTTgcccacgacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtt > 2:1324781‑M1/1‑63 (MQ=255) gCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaa > 1:107230‑M1/1‑60 (MQ=255) tGAACATCGGTATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatg < 2:4008256‑M1/140‑83 (MQ=255) tGAACACCGAGAACCCGTTTTGCGGTAAAACCTTGCCAATCAGACCAACGCC‑C‑ATGTTgcccaccacaccaaagagatacataacggtcgacattgaggccgcaagcacggcgtgtaccgcaaacagcaacggtgaaatg < 2:660828‑M1/140‑83 (MQ=255) aaCATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaa < 1:3315532‑M1/140‑85 (MQ=255) tCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagg > 1:3430478‑M1/1‑52 (MQ=255) cGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagga < 2:4229526‑M1/140‑90 (MQ=255) ggATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaag > 2:3331243‑M1/1‑49 (MQ=255) ttttGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattc > 1:1819191‑M1/1‑41 (MQ=255) tGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccag < 2:1683389‑M1/140‑103 (MQ=255) cGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcg > 2:456186‑M1/1‑36 (MQ=255) ggTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcgg < 1:1414050‑M1/140‑106 (MQ=255) ggTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcgg < 2:2288687‑M1/140‑106 (MQ=255) ggTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcgg < 2:3696426‑M1/140‑106 (MQ=255) ctaGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaa < 2:4680471‑M1/139‑114 (MQ=255) aGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaatt < 1:4286012‑M1/140‑116 (MQ=255) cTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccagcatg < 1:4931443‑M1/140‑128 (MQ=255) cTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccagcatg < 1:83721‑M1/140‑128 (MQ=255) cTCCGCC‑C‑ATGTTgcccaccacacaaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccagcatg < 1:1188633‑M1/140‑128 (MQ=255) | GCAGAATCAGTGTGCGG‑AAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑C‑C‑ATGTT‑‑‑CACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATG > NZ_CP025268/3864298‑3864568 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |