| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 4,542,898 | (A)6→7 | pseudogene (27/602 nt) | fimB → | type 1 fimbria switch DNA invertase FimB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 4,542,892 | 1 | . | A | 97.6% | 471.6 / 3.0 | 125 | pseudogene (21/602 nt) | fimB | type 1 fimbria switch DNA invertase FimB |
| Reads supporting (aligned to +/- strand): ref base . (3/0); new base A (77/45); total (80/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.52e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.69e-01 | |||||||||||
Only 100 of 134 total aligned reads displayed.
CCACTTACGTTAGTTATTAAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAAC‑AAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCGGGCGAGTGAAATTTGT > NZ_CP025268/4542754‑4543026 | ccACTTACGTTAGTTATTAAGCAAACGTTCGCTTTTATAAACATAATCAGTATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGAGGAAGAATAAGGCGGATAAC‑a > 2:2206360/1‑140 (MQ=255)ccACTTACGTTAGTTATTAAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAAC‑a > 2:3541721/1‑140 (MQ=255)ccACTTACGTTAGTTATTAAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAAC‑a > 1:2720578/1‑140 (MQ=255) cTTACGTTAGTTATTAAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAAC‑aaa‑a > 2:4197819/1‑140 (MQ=255) cTTACGTTAGTTATTAAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAAC‑aaa‑a > 1:1438017/1‑140 (MQ=255) aCGTTAGTTATTAAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAAC‑aaa‑aaaa > 2:211557/1‑139 (MQ=255) ttagttaTTAAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAAC‑aaa‑aaaagga < 1:694002/140‑5 (MQ=255) ttattaAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACtt > 2:3507462/1‑140 (MQ=255) ttattaAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACtt > 1:2257166/1‑140 (MQ=255) tattaAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTc < 2:12429/140‑1 (MQ=255) attaAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTcc < 2:407611/140‑1 (MQ=255) ttaAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCt < 1:5044965/140‑1 (MQ=255) aaGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGa > 2:1701938/1‑140 (MQ=255) aaGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAACGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGa > 2:1288909/1‑140 (MQ=255) aaCGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCAt > 1:2507579/1‑140 (MQ=255) aaCGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCAt > 2:58700/1‑140 (MQ=255) aCGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATa > 2:1033129/1‑140 (MQ=255) cGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGaa > 1:1167333/1‑140 (MQ=255) cTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAAt < 2:2720578/140‑1 (MQ=255) ataAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAAt < 2:2946482/140‑1 (MQ=255) ataAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAAt < 1:533041/140‑1 (MQ=255) ataAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAAt < 1:3152102/140‑1 (MQ=255) aaaCATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCa < 2:3658858/140‑1 (MQ=255) aaaCATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCa < 1:1212025/140‑1 (MQ=255) aaaCATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCa < 1:1212084/140‑1 (MQ=255) aTAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCa < 2:5011140/136‑1 (MQ=255) aTAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCa > 1:5011140/1‑136 (MQ=255) aaTCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCtt > 2:3788052/1‑140 (MQ=255) cAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTaaa < 2:3125255/140‑1 (MQ=255) cAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTaaa < 1:3138454/140‑1 (MQ=255) gTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATAcc < 2:1545897/140‑1 (MQ=255) gTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATAcc < 2:570645/140‑1 (MQ=255) gTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATAcc < 2:4571577/140‑1 (MQ=255) ttGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCg > 1:3833564/1‑140 (MQ=255) ttGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCg > 1:1970019/1‑140 (MQ=255) tGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCgg < 1:2634388/140‑1 (MQ=255) tGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCgg < 1:58700/140‑1 (MQ=255) tattGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGCCCCATAGTGAAATCGACTCACTCCTTAAAGCAGCAAATACCGGGCCTc < 2:1289900/140‑1 (MQ=255) ttGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCAt > 2:4335022/1‑140 (MQ=255) gCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATgc < 1:2028751/140‑1 (MQ=255) tAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATgcag < 2:965688/140‑1 (MQ=255) tAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATgcag < 1:3715563/140‑1 (MQ=255) tAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATgcag < 2:4782987/140‑1 (MQ=255) aaCCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATgcagc > 1:209016/1‑140 (MQ=255) aCCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATgcagca < 1:2060031/140‑1 (MQ=255) aCCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATgcagca < 1:972089/140‑1 (MQ=255) aGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTa > 2:2595400/1‑140 (MQ=255) aGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTa > 1:475897/1‑140 (MQ=255) aGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTa > 1:4107247/1‑140 (MQ=255) gCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTaa > 2:4265825/1‑140 (MQ=255) cacaGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAat > 2:706279/1‑140 (MQ=255) caaaGCTAGTGCGCGTCTGTAATTATAAGGG‑AAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAAGACCGGGCCTCATGCAGCACGTaagt > 2:4613648/4‑138 (MQ=255) acaGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAatt > 1:692847/1‑140 (MQ=255) cTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAgcagca < 2:1449832/108‑1 (MQ=255) cTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAgcagca > 1:1449832/1‑108 (MQ=255) cTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTg > 1:2626113/1‑140 (MQ=255) cTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTg > 2:1633036/1‑140 (MQ=255) cTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTg > 2:3458846/1‑140 (MQ=255) cTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTg > 1:598803/1‑140 (MQ=255) cTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTg > 1:661090/1‑140 (MQ=255) cTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCGCATGCAGCACGTAATTATTg > 1:2740474/1‑140 (MQ=255) cTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGGGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTg > 1:2862004/1‑140 (MQ=255) aGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTc < 2:4975208/140‑1 (MQ=255) tGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCa < 2:991172/89‑1 (MQ=255) tGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTg > 2:3567792/1‑140 (MQ=255) gcgcGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGa > 1:4811652/1‑140 (MQ=255) cgTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAAt < 2:4014936/83‑1 (MQ=255) cgTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAAt > 1:4014936/1‑83 (MQ=255) cgTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGActt > 1:4724898/1‑140 (MQ=255) cgTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGActt > 1:769940/1‑140 (MQ=255) cgTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAAC‑AAAGAAAGGAACTTCCGGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCAGGCAGCACGTAATTATTGTGTGActt > 2:2907330/1‑140 (MQ=255) tCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGActttg > 1:5027900/1‑140 (MQ=255) tCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGActttg > 1:1548267/1‑140 (MQ=255) tCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGActttg > 1:1759632/1‑140 (MQ=255) tCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGActttg < 2:4887911/140‑1 (MQ=255) tCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGActttg > 2:4819924/1‑140 (MQ=255) tCTGTAATTATAAGGGAAAAACGATGAACAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACGCAGAGTGAAAGCGAATCAATCCTTAAAGCAGCAAAAACCAGGCCTCATGCAGCACGTAATTATTGTCTAActttg > 2:1159569/1‑140 (MQ=255) tGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGActttgct < 2:2477968/140‑1 (MQ=255) tGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGActttgct < 2:2477830/140‑1 (MQ=255) tGTAATTATAAGGGAAAAACGATGAAGAATAAAGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGGCTGActttgct < 1:4327503/140‑1 (MQ=255) gTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGActttgctt > 2:1511538/1‑140 (MQ=255) gTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGActttgctt > 2:1511327/1‑140 (MQ=255) aTTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGt < 1:720046/140‑1 (MQ=255) aaGGGAAAAACGGTGAAGAAGAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTAt > 2:5048344/1‑140 (MQ=255) aaGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTAt > 2:3458188/1‑140 (MQ=255) aaGGGAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTAt > 1:1769519/1‑140 (MQ=255) ggAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCa > 2:839243/1‑140 (MQ=255) ggAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCa < 2:3785144/140‑1 (MQ=255) ggAAAAACGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCAGACCCATAGTGAAATCGAATCACTCCTTAATGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTAATTCa > 2:4502031/1‑140 (MQ=255) aaaaaCGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATg < 1:1400559/140‑1 (MQ=255) aaaaCGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATgg > 1:3495859/1‑140 (MQ=255) aaaCGATGAAGAATAAGGCTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGt > 1:3298506/1‑140 (MQ=255) gtcTGATAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACGTTGCTTTGTTTTATTCATGGTTTCCGGGCGAGTGaaa > 2:2158215/3‑140 (MQ=255) aTAACAAAA‑AAAGGACCTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCGGGCGAGTGAAATTTGt < 1:2991137/140‑1 (MQ=255) aTAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCGGGCTAGTGAAAttttt > 2:2438213/1‑138 (MQ=255) aTAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCGGGCGAGTGAAATTTGt > 2:4849284/1‑140 (MQ=255) aTAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCGGGCGAGTGAAATTTGt > 2:2665557/1‑140 (MQ=255) aTAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCGGGCGAGTGAAATTTGt > 2:4308168/1‑140 (MQ=255) aTAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCGGGCGAGTGAAATTTGt > 2:787329/1‑140 (MQ=255) aTAACAAAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCGGGCGAGTGAAATTTGt > 2:2909755/1‑140 (MQ=255) | CCACTTACGTTAGTTATTAAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAAC‑AAA‑AAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCGGGCGAGTGAAATTTGT > NZ_CP025268/4542754‑4543026 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |