New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP025268	= 3549238	396 (1.330)	51 (0.200) +TTTTTTAATGATACGGCGAC	26/236	4.4	13.6%	coding (1519/2085 nt)	malQ	4‑alpha‑glucanotransferase
	?	NZ_CP025268	3549259 =	366 (1.230)					coding (1498/2085 nt)	malQ	4‑alpha‑glucanotransferase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCCGCAACCGCCATCGACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP025268/3549123‑3549238 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCCCTGATCTGCCGTCTCGCCATA  >  NZ_CP025268/3549259‑3549376                                                                                                                     ||||||||||||||||||||                                                                                                                       GCCGCAACCGCCATCGACTGCTCCGGATACGCGTTCGGTGCACGGAACGTGTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCCGCTGCGCAGCTTACCTTTTTTAATGATACGGCGACCACC                                                                                                                    <  2:2167492/140‑1    cCAACCGCCATCGACTGCTCCGGATGCGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCTTTTTTAATGATACGGCGACCACCGAG                                                                                                                 <  2:4635449/139‑1           CCATCGCCTCCTCCGGATACGCTTTTGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCTTTTTTAATGATACGGCCGCCACCGAGATCTACA                                                                                                          <  2:4132885/140‑1             cTCGACTGCGCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACAGCGCTGCTGCGCAGCTTACCTTTTTTAATGATACGGCGACCACCGAGATCTACACC                                                                                                        <  2:3987051/139‑1             ATCGACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGTTTTTAATGATACGGCGACCACCGAGATCTACACC                                                                                                        <  2:2980511/140‑1             ATCGACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGTTTTTAATGATACGGCGACCACCGAGATCTACACC                                                                                                        <  2:2045832/140‑1             ATCGACTGCCCCGGATACGCTTTCGGTGCACGGACCGTCTTCTCGTGGTCGTTTTCGAAATCGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCTTTTTTAATGATACGGCGACCACCGAGATCTACACC                                                                                                        <  2:1123434/140‑1             ATCGACTACTCCAGATACGCTTTCGGAGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAACGCACTTTCTAAGAGTACACACCGCTGCCGCGCAGCTTACCTTTTTTAATGATACGGCGACCACCGAGATCTACACC                                                                                                        <  2:2705950/140‑1               cgcCTGCTTCGGATACGCTTTCAGTGCACGTAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACGTTGTAAGAATACACACCGCTGCTGAGCAGCTTACCTTTTTTAATGATACGGCGACCACCGAGATCTACACCAA                                                                                                      <  2:2835667/137‑1               CGACTGCTCCGTATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCTTTTTTAATGATACGGCGACCACCGAGATCTACACCAA                                                                                                      <  2:2610761/140‑1               CGACTGCTCCGGATACGCTTGCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCTTTTTTAATGATACGGCGACCACCGAGATCTACACCAA                                                                                                      <  2:1215022/140‑1               CGAATGCTCCGGATACGCTCTCGGTGCACGGAACCTCTTCTCGTTGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTCCGCAGCTTACCTTTTTTAATGATACGGCGACCACCGAGATCTACACCAA                                                                                                      <  2:987871/140‑1                GACTGCTCCGGATCCGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCTTTTTTAATGATACGGCGACCACCGAGATCTACACCAAT                                                                                                     <  2:2733948/140‑1                GACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCTTTTTTAATGATACGGCGACCACCGAGATCTACACCAAT                                                                                                     <  2:3545225/140‑1                GACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGTTTTTCATGATCCGGACGCTACCGAGATCTTCACCAAT                                                                                                     <  2:3078429/140‑1                GACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCCTACCGTTTTTAAAGACCCGGCGACCACCGAGATCTACACCAAT                                                                                                     <  2:4679457/140‑1                GACTGCTCCGGATAAGCTCTCGGGGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCTTCTTTCACGACCCGGCGGGCACCGAGATCTTCACCAAT                                                                                                     <  2:4423713/140‑1                GACTCCTCCGGATACGCTTTCGGTGCAAGGAATGTATTCCCGTGGTCGTTTTCGTAATAGAGTCCTTTGTAAGAGTCCACACCGCTGCTGCGCAGCTTACCTTTTTTAATGATCCGGCGACCACCGAGATCTACACCAAT                                                                                                     <  2:388040/140‑1                     CTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCTTTTTTAATGATACGGCGACCACCGAGATCTACACCAATCACCA                                                                                                <  2:1238513/140‑1                     CTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCTTTTTTAATGATACGGCGACCACCGAGATCTACACCAATCACCA                                                                                                <  2:1375640/140‑1                       ccacATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCTAAATACAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCTTTTTTAATGATACGGCGACCACCGAGATCTACACCAATCACCATA                                                                                              <  2:4558923/136‑1                       CCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCTTTTTTAATGATACGGCCACCACCGAGATCTACACCAATCACCATA                                                                                              <  2:3623278/140‑1                            TACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCTTTTTTAATGATACGGCGACCACCGAGATCTACACCAATCACCATACAGCG                                                                                         <  2:2479769/140‑1                              CGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGTCTTTAATGATACGGCGGCCACCGAGATCTACACCAATCACCATACAGCGAT                                                                                       <  2:852071/140‑1                               GCTTTCGGTGCACGGACCGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACGTTGTAGGAGTACACACCGCTGCTGCGCAGCTTACCTTTTTTAATGATCCGGCGACTACCGAGATCTACACCAATCACCATACAGCGATG                                                                                      <  2:732108/140‑1                               GCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGTCTTTAATGATCCGGACGCCACCGAGATCTACACCAATCACCATACAGCGATG                                                                                      <  2:1391869/140‑1                               GCTTTCGGTGCACGGAACGTCTGCTCGTGGTCGTTGGCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGTTTTTCACGATCGGGAGGCTACCGAGATCTTCACCAATCACCATACAGCGATG                                                                                      <  2:1392285/140‑1                                   TCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCTTTTTTCATGATACGGCGACCACCGAGATCTACACCAATCACCATACAGCGATGACGT                                                                                  <  2:5110686/140‑1                                                        CGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGATTACCTTTTTTAATGATACGGAGACCACCGAGATCTACACCAATCACCATACAGCGATGACGTTTACTGTCGAGTGCCAGAATC                                                             <  2:4357582/140‑1                                                          TGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCTTTTTTCATGATCCGGCCGCCACCGAGATCTACACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGA                                                           <  2:4459627/140‑1                                                            GTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCTTTTTTCATGATACGGAGGTCACCGAGATCTACACCAATCACCATACAGCGGTGACGTTTACTTTCGAGTGCCAGAATCGAGA                                                         <  2:2717573/140‑1                                                                   TCGAAATATAGGACTTTGTAAGAGCACACACCGCTGCTGGGAAGCTTACCTTTTTTAATGATACGGCGACCACCGAGATCTACACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATC                                                  <  2:167524/140‑1                                                                        atcgcGCAATTTGTAAGAGTAACCACCGCTGCTACGCAGCTTACCTTCTTTAATGATCCGGCGACCACCGAGATCTACACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCA                                             <  2:1895636/135‑1                                                                        ATAGCGAACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCTTTTTTAATGATACGGCGACCACCGAGATCTACACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCA                                             <  2:2813359/140‑1                                                                        ATAGAGCACTTTGTAATAGTACACACCGCTGCTGCGCAGCTTAACTTTTTTAATGATACGGCGACCACCGAGATCTACACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCA                                             <  2:2810349/140‑1                                                                        ATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCTTTTTTAATGATCCGGCGACCACCGAGATCTACACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCA                                             <  2:4673729/140‑1                                                                          AGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTTCCTTTTTTAATGATACGGCGACCACCGAGATCTACACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACC                                           <  2:1348164/140‑1                                                                          AGAGCACGTTGTAAGAGTACACACCGCTGCTGCTAAGCTTACCTTTTTTAATGATACGGCGACCACCGAGATCTACACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACC                                           <  2:1348149/140‑1                                                                             GCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGTCTTTCACGATCCGTCCGCCACCGAGATCTACACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGA                                        <  2:4692098/140‑1                                                                              CACTTTGTAAGAGTACACACCGCTGCTGCGGAGCTTACCGTTTTTCATGATCCGGCCGGTACCGAGATCTACACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGAT                                       <  2:3184159/140‑1                                                                                    GTAAGAGTACACACCGCTGCTGCGCAGCTTACCTTTTTTAATGATACGGCGACCACCGAGATCTACACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCCCCGGATAGTGAA                                 <  2:5040756/140‑1                                                                                    GTAAGAGTACACACCGCTGCTGCGCAGCTTACCGTTTTTAATGATCCGGCGACCACCGAGATCTACACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAA                                 <  2:2508380/140‑1                                                                                         AGTACACACCGCTGCTGCGCAGCTTACCTTTTTTCATGATCCGGCGACCACCGAGATCTACACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATAC                            <  2:1714864/140‑1                                                                                         AGTACACACCGCTGCTGCGCAGCTTACCTTTTTTAATGATCCGGCGACCACCGAGATCTACACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATAC                            <  2:1714883/140‑1                                                                                         AGTACACACCGCTGCTGCGCAGCTTACCGACTTTCATGATCCGTCCGCCACCGAGATCTACACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATAC                            <  2:5117496/140‑1                                                                                         AGTACACACCGCTGCTGCGCAGATTACCTTTTTTAATGATACGGCGACCACCGAGATCTACACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATAC                            <  2:2419467/140‑1                                                                                              cCACCGCTGCTGCGCAGCTTACCTTTTTTAATGATACGGCGACCACCGAGATCTACACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCC                       <  2:673183/139‑1                                                                                              ACACCGCTGCTGCGCAGCTTACCTTTTTTAATGATCCGGCCACCACCGAGATCTACACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCC                       <  2:143568/140‑1                                                                                                    CTGCTGCGCAGCTTACCGATATTATTGACCCGTCGACCACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCCCTGATC                 <  2:1598388/140‑1                                                                                                                TTACCTTCTTTAACGATCAGGCCACCACCGAGATCTACACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGACTCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCCCTGATCTGCCGTCTCGCC     <  2:3641122/140‑1                                                                                                                   aCTTTTTTAATGATACGGCGACCACCGAGATCTACACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCCCTGATCTGCCGTCTCGCCATA  <  2:654086/139‑1                                                                                                                     ||||||||||||||||||||                                                                                                                       GCCGCAACCGCCATCGACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP025268/3549123‑3549238 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCCCTGATCTGCCGTCTCGCCATA  >  NZ_CP025268/3549259‑3549376

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.