| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NZ_CP025268 | 262,011 | Δ34,307 bp | ykfI–intF | 46 genes ykfI, yafW, ykfH, ykfG, yafX, ykfF, CXP41_RS01315, CXP41_RS01320, CXP41_RS01325, CXP41_RS01330, yafZ, ykfA, perR, CXP41_RS01355, CXP41_RS01360, CXP41_RS01365, ykfC, CXP41_RS01385, mmuP, mmuM, fbpC, CXP41_RS01405, CXP41_RS01410, CXP41_RS01410, CXP41_RS01420, CXP41_RS01425, yagB, CXP41_RS24560, yagA, yagE, yagF, yagG, yagH, xynR, argF, argL, CXP41_RS01470, CXP41_RS01480, CXP41_RS01480, CXP41_RS01490, yagK, yagL, CXP41_RS01505, ykgV, CXP41_RS01515, intF |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP025268 | 262011 | 296317 | 34307 | 346 [1] | [1] 347 | ykfI–intF | ykfI,yafW,ykfH,ykfG,yafX,ykfF,CXP41_RS01315,CXP41_RS01320,CXP41_RS01325,CXP41_RS01330,yafZ,ykfA,perR,CXP41_RS01355,CXP41_RS01360,CXP41_RS01365,ykfC,CXP41_RS01385,mmuP,mmuM,fbpC,CXP41_RS01405,CXP41_RS01410,CXP41_RS01410,CXP41_RS01420,CXP41_RS01425,yagB,CXP41_RS24560,yagA,yagE,yagF,yagG,yagH,xynR,argF,argL,CXP41_RS01470,CXP41_RS01480,CXP41_RS01480,CXP41_RS01490,yagK,yagL,CXP41_RS01505,ykgV,CXP41_RS01515,intF |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP025268 | = 262010 | 1 (0.000) | 212 (1.270) | 61/156 | 0.1 | 99.9% | intergenic (+11/+371) | CXP41_RS01280/ykfI | tRNA‑Thr/type IV toxin‑antitoxin system toxin YkfI |
| ? | NZ_CP025268 | 296318 = | 0 (0.000) | intergenic (‑170/+115) | intF/CXP41_RS01530 | integrase family protein/LysR substrate‑binding domain‑containing protein | |||||
Only 100 of 346 total aligned reads displayed.
TTAGTTTTAACCTTGTCCACCGTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAATTGTTACGTAAGATCTTATCATTCTCCCACCAAAAAATTATCTTAATGTAACAGCTGGTGTAAGTAAATTCTATCAACGAAGATCAATCTTATCTACTGACCAAAAAGGCCTGATAGGGCTTCGCTCACTATACATCC > NZ_CP025268/261871‑262148 | ttAGTTTTAACCTTGTCCACCGTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAA < 1:613440‑M1/140‑1 (MQ=255) ttttAACCTTGTCCACCGTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagt < 1:997838‑M1/140‑5 (MQ=255) ttAACCTTGTCCACCGTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGTAGCGCATTCGTAATGCGAAGGTGGTAGGCTCGACTCCTATTATCGGCACCATTAAAATCAAAgagtta < 2:4844789‑M1/140‑7 (MQ=255) ttAACCTTGTCCACCGTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagtta > 2:3585831‑M1/1‑134 (MQ=255) aaCCTTGTCCACCGTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttacc < 1:339659‑M1/140‑9 (MQ=255) cTTGTCCACCGTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttacccca < 1:383523‑M1/140‑12 (MQ=255) cTTGTCCACCGTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttacccca < 1:1384221‑M1/140‑12 (MQ=255) cTTGTCCACCGTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttacccca < 1:260456‑M1/140‑12 (MQ=255) cTTGTCCACCGTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttacccca < 1:1703659‑M1/140‑12 (MQ=255) cTTGTCCACCGTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttacccca < 2:3277618‑M1/140‑12 (MQ=255) cTTGTCCACCGTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttacccca < 2:1506121‑M1/140‑12 (MQ=255) cTTGTCCACCGTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCCTAATGCGAAGGTCGTCGGTTCGACTCCTATTATCGGAAGCATTAAAATCAAAgcgttccccca < 2:1714956‑M1/140‑12 (MQ=255) gTCCACCGTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatat > 2:3501158‑M1/1‑126 (MQ=255) ccACCGTTATTCACGTTCGTGAACATGTCCTTTCAGGGACGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatattt < 2:2129557‑M1/140‑17 (MQ=255) cACCGTTATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatattta < 1:3481847‑M1/140‑18 (MQ=255) gTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaata > 2:253488‑M1/1‑119 (MQ=255) aTTCACGTTCGTGAACATGTCCTTCCAGGCCAGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTCGGTTCGACTCCTATTCTCGGCACCATTACAATCACAgagttaccccatatttaaatacac < 2:3023586‑M1/140‑25 (MQ=255) ttCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacacc < 2:2949529‑M1/140‑26 (MQ=255) ttCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacacc < 1:2534250‑M1/140‑26 (MQ=255) ttCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacacc < 1:1548481‑M1/140‑26 (MQ=255) ttCACGTTCGTGAACATGTCCTTTCAGGGCCGAGATAGCGCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGGCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgaggtaccccatatttaaatacacc > 1:2437403‑M1/1‑115 (MQ=255) ttCACGATCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacacc < 2:4952862‑M1/140‑26 (MQ=255) gTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtt < 1:5063297‑M1/140‑31 (MQ=255) gTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtt < 1:1252884‑M1/140‑31 (MQ=255) tCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttc < 2:4516274‑M1/140‑33 (MQ=255) aaCCTGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGCCTCCTATTATCAGCACCATTAAAATCAAAgagttaccccatatttaaataccccacgtttcctcct < 2:544366‑M1/140‑38 (MQ=255) aTGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtg > 1:4193177‑M1/1‑100 (MQ=255) gTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgcc > 2:898218‑M1/1‑98 (MQ=255) ccTTTCAGGGCCGATATAGCTCAGTGGGTAGGGCAGCGCATTCGTAATGCGAAGGTGGTAGGTTCGACTCCTATTATCGGCACCATTAAAAACAAAgagttacctcatatttaaatacaccacgattgctcctgtgccgt > 2:6580‑M1/1‑96 (MQ=255) tttCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtat < 1:2667168‑M1/140‑47 (MQ=255) tCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtattt > 1:1645138‑M1/1‑92 (MQ=255) tCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtattt > 2:3309889‑M1/1‑92 (MQ=255) aGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGTTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgt < 2:2374234‑M1/140‑51 (MQ=255) gggCCGATATAGCTCAGTTGGTCGCGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtg < 1:120245‑M1/140‑52 (MQ=255) gggCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatgcaccacgtttcctcctgtgccgtatttgtg < 2:3222315‑M1/140‑52 (MQ=255) gggCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtg < 1:539821‑M1/140‑52 (MQ=255) gggCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtg < 1:1417003‑M1/140‑52 (MQ=255) gggCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtg < 1:3610220‑M1/140‑52 (MQ=255) gggCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAaagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtg < 2:3958375‑M1/140‑52 (MQ=255) gccccgatATAGCTCAGTTGGTCGAACAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacacctcgtttcctcctgtgccgtatttgtg < 2:1608045‑M1/137‑52 (MQ=255) ggCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAACCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgc < 1:2111194‑M1/140‑53 (MQ=255) gATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccatt > 1:1770012‑M1/1‑84 (MQ=255) atatAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattg > 1:1516263‑M1/1‑83 (MQ=255) tCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaacctt < 1:1098125‑M1/140‑65 (MQ=255) ttGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggca > 2:1291946‑M1/1‑72 (MQ=255) ttGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggca > 1:88356‑M1/1‑72 (MQ=255) ttGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggca > 2:935765‑M1/1‑72 (MQ=255) ttGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggca > 1:4465453‑M1/1‑72 (MQ=255) ttGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggca > 1:3705034‑M1/1‑72 (MQ=255) ttGGTAGAGCAGCGCATTCGTAATGCGAAGATCGTAGGTTCGAGTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggca > 2:4678218‑M1/1‑72 (MQ=255) tgggtaGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggca > 2:1113963‑M1/3‑72 (MQ=255) tGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaa < 2:3864141‑M1/140‑70 (MQ=255) tGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaa < 1:2305429‑M1/140‑70 (MQ=255) gTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaatt < 1:77396‑M1/140‑72 (MQ=255) agagCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattca < 1:1040056‑M1/140‑74 (MQ=255) agagCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattca > 2:4189205‑M1/1‑67 (MQ=255) agcGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaa > 1:4873043‑M1/1‑62 (MQ=255) agcGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaa > 1:182001‑M1/1‑62 (MQ=255) cgcATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaat > 1:500417‑M1/1‑60 (MQ=255) cgcATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaat > 1:1877103‑M1/1‑60 (MQ=255) cgcATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaat > 2:204106‑M1/1‑60 (MQ=255) cgcATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccatagtaaccttggcaattcatcaaaat > 1:2805996‑M1/1‑60 (MQ=255) cgcATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttacccca > 2:3101276‑M1/1‑60 (MQ=255) gcATTCGTAATGCGAAGGTCGTGGGTTCGACTACTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaata > 2:3804551‑M1/1‑59 (MQ=255) gcATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccaggtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaata > 1:4575567‑M1/1‑59 (MQ=255) gcATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaata < 2:4575567‑M1/140‑82 (MQ=255) gcATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaata < 2:5020954‑M1/140‑82 (MQ=255) cATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatac > 1:202348‑M1/1‑58 (MQ=255) cGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgtt < 2:1957571‑M1/140‑87 (MQ=255) gTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttc < 1:3342996‑M1/140‑88 (MQ=255) gTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttc < 2:2669085‑M1/140‑88 (MQ=255) gTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttc < 1:314789‑M1/140‑88 (MQ=255) gTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttc < 1:4632919‑M1/140‑88 (MQ=255) aTGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgaagtaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgcccttgtaaccttggcaattcatcaaaatactgttctga > 2:4785068‑M1/1‑50 (MQ=255) aaGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatca > 2:2020247‑M1/1‑45 (MQ=255) tggcgtcGGTTCGACTCCTACTATCGGCACCATTAAAATCAAAgagttaccccatatctaaatccaccacgtttcctcctgtgccgtctttgtgccattgtaaccttcgcaattcatcaaaatactgttctgccatcagc < 2:1407161‑M1/137‑98 (MQ=255) ggTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCCAAgagttaccccatatttaaatacatcacgttccctcctgtgccgtatttgtgccattgtaaccttggcaattcatcgaaatactgttctgacatcagg < 2:4242524‑M1/140‑98 (MQ=255) ggTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtcccattgtaaccttggcaattcatcaaaatactgttctgacatcagg < 2:4444107‑M1/140‑98 (MQ=255) gTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcaggc < 1:3216448‑M1/140‑99 (MQ=255) tAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcaggcagtg > 1:4098970‑M1/1‑38 (MQ=255) cGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcagttcatcaaaatactgttctgacatcaggcagtgccggtg > 1:2407343‑M1/1‑32 (MQ=255) cGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcaggcagtgcaggtg > 1:3379986‑M1/1‑32 (MQ=255) gACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcaggcagtgcaggtgc > 2:4364124‑M1/1‑31 (MQ=255) aCTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcaggcagtgcaggtgca < 1:84610‑M1/140‑111 (MQ=255) aCTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcaggcagtgcaggtgca < 1:2213905‑M1/140‑111 (MQ=255) cTCCGATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaacctgggcaattcatcaaaatactgttctgacatcaggcagtgcaggtgcag < 1:4264698‑M1/140‑112 (MQ=255) cGGCACCATTAAAATCAAAgagttagcccatatttaaatacaccacgtctcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcaggcagtgcaggtgtcgacatttaagg > 2:3432623‑M1/1‑19 (MQ=255) cGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcaggcagtgcaggtgcagacatttaagc > 1:4770241‑M1/1‑19 (MQ=255) cGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcaggcagtgcaggtgcagacatttaagc > 1:3685404‑M1/1‑19 (MQ=255) cACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcaggcagtgcaggtgcagacatttaagccaa > 2:4029083‑M1/1‑16 (MQ=255) cACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcaggcagtgcaggtgcagacatttaagccaa > 1:4065589‑M1/1‑16 (MQ=255) cACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctc < 1:3943433‑M1/51‑36 (MQ=255) cACCATTAAAATCAAAgaggtaccccatatttaaatacaccacgtttcctgctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcaggcggtgcaggtgcagacatttaagccaa > 2:3391758‑M1/1‑16 (MQ=255) cATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcaggcagtgcaggtgcagacatttaagccaattg > 2:2446255‑M1/1‑13 (MQ=255) ttAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcaggcagtgcaggtgcagacatttaagccaattgct > 1:3299746‑M1/1‑11 (MQ=255) caacacaaaagagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatccacatactgttctgacatcaggcagtgcaggtgcagacatttaagccaattgctg < 2:2173393‑M1/133‑131 (MQ=255) aaaaTCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcacaatactgttctgacatcaggcagtgcaggtgcagacatttaagccaattgctgc < 2:2409798‑M1/140‑132 (MQ=255) aTCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcaggcagtgcaggtgcagacatttaagccaattgctgccgc > 1:760621‑M1/1‑6 (MQ=255) aaagagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcaggcagtgcaggtgcagacatttaagccaattgctgccgccat > 1:1074812‑M1/1‑3 (MQ=255) aagagttaccccatatttaaatacaccacgtttcctcctgtgccgttttcgtgccattgtaaccttggcaattcatcaaaatactgttttgacatcaggcagtgcaggttcagacaattaagccaattgctgccgccatt < 1:3049246‑M1/140‑139 (MQ=255) | TTAGTTTTAACCTTGTCCACCGTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAATTGTTACGTAAGATCTTATCATTCTCCCACCAAAAAATTATCTTAATGTAACAGCTGGTGTAAGTAAATTCTATCAACGAAGATCAATCTTATCTACTGACCAAAAAGGCCTGATAGGGCTTCGCTCACTATACATCC > NZ_CP025268/261871‑262148 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |