New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NZ_CP025268 = 12931011 (0.000)182 (0.720) 56/236 1.1 59.2% noncoding (114/132 nt) CXP41_RS06840 RtT sRNA
?NZ_CP025268 1293574 = 250 (0.980)noncoding (66/85 nt) CXP41_RS06855 tRNA‑Tyr

Only 100 of 255 total aligned reads displayed.

GCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGT  >  NZ_CP025268/1292962‑1293240
                                                                                                                                           |                                                                                                                                           
gCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGGGGGGGAAGGATT                                                                                                                                             >  2:2059043‑M1/1‑140 (MQ=255)
 cGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTc                                                                                                                                            >  1:694980‑M1/1‑139 (MQ=255)
   gCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcga                                                                                                                                          <  1:3819326‑M1/140‑4 (MQ=255)
      aCGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaacc                                                                                                                                       >  1:422391‑M1/1‑134 (MQ=255)
       cGCTCTCTCGCTGGCGCTCGAGTCGAAGCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGGTGGGAAGTTCAGGGACGTTTGAAAGTGATGGTGGTGGGGGAAGGGTTcgaacct                                                                                                                                      >  2:3761782‑M1/1‑133 (MQ=255)
       cGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaacct                                                                                                                                      >  1:2505141‑M1/1‑133 (MQ=255)
       cGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaacct                                                                                                                                      >  1:1823648‑M1/1‑133 (MQ=255)
         ctctctCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttc                                                                                                                                    >  2:555965‑M1/1‑131 (MQ=255)
          tctctcGCTGGCGCTTGTGTCGAACCTTGGTCGAAGCTTGTCATCCTTGCCCGCATGGGCAGAATGTTTAATTGGGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcg                                                                                                                                   <  2:3240349‑M1/140‑11 (MQ=255)
          tctctcGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcg                                                                                                                                   <  1:1760182‑M1/140‑11 (MQ=255)
            tctcGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaa                                                                                                                                 >  1:4937343‑M1/1‑128 (MQ=255)
             ctcGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaag                                                                                                                                <  1:4345996‑M1/140‑14 (MQ=255)
                   ggcgcTCGAGTCGAACCTTGGTCGCAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatg                                                                                                                          >  2:4646166‑M1/3‑121 (MQ=255)
                     cGCTGGAGTCGAACCTTAGGCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgac                                                                                                                        <  2:3468992‑M1/140‑22 (MQ=255)
                     cGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGGAGTTCAGGGACTTTTGAAAGTGATGGTGTTGGGGGAAGGATTcgaaccttcgaagtcgatgac                                                                                                                        <  2:4384933‑M1/140‑22 (MQ=255)
                      gCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgctgacg                                                                                                                       >  2:3417756‑M1/1‑118 (MQ=255)
                      gCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacg                                                                                                                       >  1:3140109‑M1/1‑118 (MQ=255)
                       ctcaagtcgaaccttGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacgg                                                                                                                      <  2:3281771‑M1/133‑24 (MQ=255)
                       ctcaagtcgaaccttGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacgg                                                                                                                      <  2:876655‑M1/133‑24 (MQ=255)
                       cTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGGTGGTGGTGGGGGAAGGATTcgacccttcgaagtcgatgacgg                                                                                                                      <  1:1154164‑M1/140‑24 (MQ=255)
                       cTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacgg                                                                                                                      <  2:1230143‑M1/140‑24 (MQ=255)
                       cTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacgg                                                                                                                      <  2:2272595‑M1/140‑24 (MQ=255)
                       cTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacgg                                                                                                                      <  1:3758554‑M1/140‑24 (MQ=255)
                       cTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacgg                                                                                                                      <  1:3654361‑M1/140‑24 (MQ=255)
                       cTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacgg                                                                                                                      <  1:3266323‑M1/140‑24 (MQ=255)
                       cTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacgg                                                                                                                      <  1:1904857‑M1/140‑24 (MQ=255)
                       cTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacgg                                                                                                                      <  2:4526214‑M1/140‑24 (MQ=255)
                       cTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacgg                                                                                                                      <  1:2599044‑M1/140‑24 (MQ=255)
                        tCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATCTTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggc                                                                                                                     >  1:2314796‑M1/1‑116 (MQ=255)
                         cGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggca                                                                                                                    <  1:2997602‑M1/140‑26 (MQ=255)
                                aaCCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttac                                                                                                             <  1:4894291‑M1/140‑33 (MQ=255)
                                 accttggtcgaagctTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttaca                                                                                                            <  2:4145364‑M1/133‑34 (MQ=255)
                                 accttggtcgaagctTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttaca                                                                                                            <  1:3719226‑M1/133‑34 (MQ=255)
                                 aCCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttaca                                                                                                            <  1:1636976‑M1/140‑34 (MQ=255)
                                      ggtcgAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctg                                                                                                       >  1:3421472‑M1/3‑102 (MQ=255)
                                      ggtcgAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctg                                                                                                       <  1:3548019‑M1/138‑39 (MQ=255)
                                      ggtcgAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctg                                                                                                       <  1:2453739‑M1/138‑39 (MQ=255)
                                      ggtcgAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctg                                                                                                       <  2:3718758‑M1/138‑39 (MQ=255)
                                      ggtcgAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctg                                                                                                       <  1:908963‑M1/138‑39 (MQ=255)
                                      ggtcgAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctg                                                                                                       <  2:4087648‑M1/138‑39 (MQ=255)
                                      ggtcgAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGGGGTGGGGGTAGGATTcgaaccttcgaagtcgatggcggcagatttacagtcta                                                                                                       >  2:4840708‑M1/3‑102 (MQ=255)
                                           aaGCTTCTCATCCTTCCCCGCATGGGCAGAATATGTAATTGCTGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatgtacagtctgctccc                                                                                                  >  2:3823574‑M1/1‑97 (MQ=255)
                                                 ctcATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggc                                                                                            <  1:1516990‑M1/140‑50 (MQ=255)
                                                 ctcATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggc                                                                                            <  1:3047809‑M1/140‑50 (MQ=255)
                                                 ctcATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggc                                                                                            <  2:2752890‑M1/140‑50 (MQ=255)
                                                 ctcATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggc                                                                                            >  1:2794685‑M1/1‑91 (MQ=255)
                                                  tcATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggcc                                                                                           <  1:2921332‑M1/140‑51 (MQ=255)
                                                      ccTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGGAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacgtcagatttacagtctgctccctttggccgctc                                                                                       >  1:4050072‑M1/1‑86 (MQ=255)
                                                        ttCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgg                                                                                     >  2:4964982‑M1/1‑84 (MQ=255)
                                                        ttCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgg                                                                                     >  1:2422767‑M1/1‑84 (MQ=255)
                                                         tCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcggg                                                                                    <  1:3888719‑M1/140‑58 (MQ=255)
                                                         tCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcggg                                                                                    >  1:2886650‑M1/1‑83 (MQ=255)
                                                           cccGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaa                                                                                  >  1:629085‑M1/1‑81 (MQ=255)
                                                           cccGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaa                                                                                  <  1:135411‑M1/140‑60 (MQ=255)
                                                             cGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaacc                                                                                <  2:1194864‑M1/140‑62 (MQ=255)
                                                              gCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccc                                                                               >  1:3101166‑M1/1‑78 (MQ=255)
                                                                aTGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaacccca                                                                             >  1:3949125‑M1/1‑76 (MQ=255)
                                                                  gggCAGAATATTTGATTGCGGATTCGTTGGGGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccacc                                                                           <  2:4454204‑M1/140‑67 (MQ=255)
                                                                  gggCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccacc                                                                           >  1:4340345‑M1/1‑74 (MQ=255)
                                                                  gggCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccacc                                                                           >  2:1571075‑M1/1‑74 (MQ=255)
                                                                   ggCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccacca                                                                          >  1:891648‑M1/1‑73 (MQ=255)
                                                                    gCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccag                                                                         >  1:1031792‑M1/1‑72 (MQ=255)
                                                                          tatTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAACTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggta                                                                   <  1:4656746‑M1/140‑75 (MQ=255)
                                                                             ttAATTGCGGATTCGTTGGGAAGTTCGGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAGTcgaaccttcgaagtcgatgacggcaggtttacagtctgctccctttggccgcgcgggaaccacagcagggggattta                                                                >  2:1371287‑M1/1‑63 (MQ=255)
                                                                               aactccagattagtgGGGATGTTCAGGCACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgct                                                              <  1:3180253‑M1/133‑80 (MQ=255)
                                                                                aTTGCGGATGCGTTGGGATGTTCAGGGACTTTGGAAAGTGATGGTGGGGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccaggggtaattcaaa                                                             <  2:2461166‑M1/140‑81 (MQ=255)
                                                                                  tGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccaggggtaattcaaatt                                                           >  1:2124243‑M1/1‑58 (MQ=255)
                                                                                  tGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccaggggtaattcaaatt                                                           >  1:2965280‑M1/1‑58 (MQ=255)
                                                                                  tGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccaggggtaattcaaatt                                                           >  1:54270‑M1/1‑58 (MQ=255)
                                                                                  tGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctgtt                                                           >  2:1886391‑M1/1‑58 (MQ=255)
                                                                                                                tGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggg                             <  1:267967‑M1/140‑113 (MQ=255)
                                                                                                                         tggtggtggGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggacccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcat                    <  2:534491‑M1/140‑122 (MQ=255)
                                                                                                                         tggtggtggGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcat                    >  2:1722517‑M1/1‑19 (MQ=255)
                                                                                                                          ggtggtggGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcata                   <  2:184839‑M1/140‑123 (MQ=255)
                                                                                                                           gtggtggGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatat                  >  2:2853880‑M1/1‑17 (MQ=255)
                                                                                                                           gtggtggGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatat                  >  1:1569646‑M1/1‑17 (MQ=255)
                                                                                                                              gtggGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaa               >  1:3867067‑M1/1‑14 (MQ=255)
                                                                                                                              gtggGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaa               >  2:394597‑M1/1‑14 (MQ=255)
                                                                                                                              gtggGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaa               >  1:791930‑M1/1‑14 (MQ=255)
                                                                                                                              gtggGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcagcatatcaa               >  1:2063920‑M1/1‑14 (MQ=255)
                                                                                                                                gggggAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaat             >  1:1696337‑M1/1‑12 (MQ=255)
                                                                                                                                 ggggAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctcccattggccgctcgggaaccccaccacggggtaatgctttttcctggcctgctcccttatcgggaagcggggcgcatcatatcaaatg            >  2:5017242‑M1/1‑11 (MQ=255)
                                                                                                                                   ggAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgac          >  2:353768‑M1/1‑9 (MQ=255)
                                                                                                                                    gAAGGATTcgacccttcgaagtcgatgacggcatatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacg         <  2:1343316‑M1/140‑133 (MQ=255)
                                                                                                                                    gAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacg         <  1:1589081‑M1/140‑133 (MQ=255)
                                                                                                                                    gAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctg                                                                                                       >  1:1247003‑M1/1‑8 (MQ=255)
                                                                                                                                      aGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggtgcatcatatcaaatgacgcg       <  2:5048471‑M1/140‑135 (MQ=255)
                                                                                                                                      aGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggggcatcatatcaaatgacgcg       <  2:5047747‑M1/140‑135 (MQ=255)
                                                                                                                                      aGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcg       <  1:1009944‑M1/140‑135 (MQ=255)
                                                                                                                                      aGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcg       <  1:227310‑M1/140‑135 (MQ=255)
                                                                                                                                      aGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcg       >  2:935311‑M1/1‑6 (MQ=255)
                                                                                                                                      aGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcg       <  2:2149668‑M1/140‑135 (MQ=255)
                                                                                                                                      aGGATTcgaaccttcgaaggcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcg       <  1:4964982‑M1/140‑135 (MQ=255)
                                                                                                                                      aGGATTcgaacctccgaagtcgatgacggcagatttacagtctgctccccttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcg       <  2:1093662‑M1/140‑135 (MQ=255)
                                                                                                                                        gATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaaggctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgcc     >  1:4240094‑M1/1‑4 (MQ=255)
                                                                                                                                         aTTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccg    <  1:3720278‑M1/140‑138 (MQ=255)
                                                                                                                                         aTTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgcgcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccg    >  2:954351‑M1/1‑3 (MQ=255)
                                                                                                                                          ttcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccacca                                                                          <  2:291714‑M1/69‑68 (MQ=255)
                                                                                                                                           tcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccgct  >  1:4063142‑M1/1‑1 (MQ=255)
                                                                                                                                           tcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccgct  >  1:948998‑M1/1‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                           
GCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGT  >  NZ_CP025268/1292962‑1293240

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.