BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP025268	695911 =	0 (0.000)	156 (0.570) +GAAGAAACAATC	36/252	3.2	59.4%	intergenic (‑33/+2)	CXP41_RS03680/CXP41_RS03685	tRNA‑Gln/tRNA‑Gln
*	?	NZ_CP025268	= 696182	234 (0.790)	156 (0.570) +GAAGAAACAATC	36/252	3.2	59.4%	intergenic (‑1/+379)	CXP41_RS03695/asnB	tRNA‑Met/asparagine synthase B
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 236 total aligned reads displayed.

CTTGCGGCGCCAGAACCTAAATCTGGTGCGTCTACCAATTTCGCCACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGAACAGCGTGGCGCTATATTCG  >  NZ_CP025268/696043‑696321

  tGCGGCGCCAGAACCTAAATCTGGTGCGTCTACCAATTTCGCCACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATc                                                                                                                                           >  1:825163/1‑140 (MQ=255)

  tGCGGCGCCAGAACCTAAATCTGGTGCGTCTACCAATTTCGCCACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATc                                                                                                                                           >  1:4189401/1‑140 (MQ=255)

         ccAGAACCTAAATCTGGTGCGTCTACCAATTTCGCCACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCttttttt                                                                                                                                    <  2:868552/140‑1 (MQ=255)

          cAGAACCTAAATCTGGTGCGTCTACCAATTTCGCCACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTACTCTAACCAACTGAGCTACGTAGCCATCtttttttt                                                                                                                                   >  1:970367/1‑140 (MQ=255)

          cAGAACCTAAACCTGGTGCGTCTACCATTTTCGCCACTCCCGCAAAAAAACAAGGTGTCTACGCCGGAATTCGAACCTGTGATCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCtttttttt                                                                                                                                   <  2:1406412/140‑1 (MQ=21)

            gAACCTAAATCTGGTGCGTCTACCAATTTCGCCACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTcg                                                                                                                                 >  1:1629920/1‑140 (MQ=255)

              aCCTAAATCTGGTGCGTCTACCAATTTCGCCACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTcgcg                                                                                                                               <  1:4387959/140‑1 (MQ=255)

                       tGGTGCGTCTACCAATTTCGCCACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTAt                                                                                                                      <  1:3580916/140‑1 (MQ=255)

                         gTGCGTCTACCAATTTCGCCACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCg                                                                                                                    >  2:857044/1‑140 (MQ=255)

                         gTGCGTCTACCAATTTCGCCACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCg                                                                                                                    >  1:3286782/1‑140 (MQ=255)

                         gTGCGTCTACCAATTTCGCCACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCg                                                                                                                    >  1:194605/1‑140 (MQ=255)

                         gTGCGTCTACCAATTTCGCCACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCg                                                                                                                    >  1:1805826/1‑140 (MQ=255)

                         gTGCGTCTACCAATTTCGCCACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCg                                                                                                                    >  1:1509506/1‑140 (MQ=255)

                         gTGCGTCTACCAATTTCGCCACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGAGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCg                                                                                                                    >  1:4972417/1‑140 (MQ=255)

                          tGCGTCTACCAATTTCGCCACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTACTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTTGCGATACCTTATCgg                                                                                                                   >  2:4929992/1‑140 (MQ=255)

                             gTCTACCAATTTCGCCACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGt                                                                                                                >  1:2975047/1‑140 (MQ=255)

                              tCTACCAATTTCGCCACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGtt                                                                                                               >  2:1975144/1‑140 (MQ=255)

                                    aatatagCCACGCCCGCAAAAAAAGATGGTAGCTACGACGGGATTCGAACCTGCGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGAAACCTTATCGGCGTTGCgggg                                                                                                         <  2:3195561/134‑1 (MQ=21)

                                    aaTTTCGCCACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCgggg                                                                                                         <  1:736405/140‑1 (MQ=255)

                                    aaTTTCGCCACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCgggg                                                                                                         <  1:3262788/140‑1 (MQ=255)

                                    aaTATCGCCTCTCCCGAATAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCgggg                                                                                                         <  2:4835756/140‑1 (MQ=255)

                                       ttCGCCACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGgcgc                                                                                                      <  1:857044/140‑1 (MQ=255)

                                        tCGCCACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCa                                                                                                     >  1:248595/1‑140 (MQ=255)

                                        tCGCCACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCa                                                                                                     >  2:2957556/1‑140 (MQ=255)

                                        tCGCCACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCa                                                                                                     >  2:2581400/1‑140 (MQ=255)

                                         cGCCACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCAt                                                                                                    <  2:5116437/140‑1 (MQ=255)

                                         cGCCACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCAt                                                                                                    <  2:1574454/140‑1 (MQ=255)

                                         cGCCACTACCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCAt                                                                                                    <  2:3910936/140‑1 (MQ=255)

                                         cGCCACGCCCGAAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCAt                                                                                                    <  2:902140/140‑1 (MQ=255)

                                          gCCACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCAtt                                                                                                   >  2:5031503/1‑140 (MQ=255)

                                            taCTACCGCAAAAGAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTAt                                                                                                 <  2:3288496/139‑1 (MQ=255)

                                            cACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTAt                                                                                                 <  2:424063/140‑1 (MQ=255)

                                            cACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTAt                                                                                                 <  2:3871990/140‑1 (MQ=255)

                                            cACTCCCGAAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGAACCCATCATTATGAGTGATGTGGTCTAACCAACTGAGCTACGTAGCCATATTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTAt                                                                                                 <  1:3390142/140‑1 (MQ=255)

                                                   gCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGtata                                                                                          <  2:705217/140‑1 (MQ=255)

                                                   gCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGtata                                                                                          <  2:2837714/140‑1 (MQ=255)

                                                   gCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGtata                                                                                          <  2:3479892/140‑1 (MQ=255)

                                                                   gCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCa                                                                          <  1:1298121/140‑1 (MQ=255)

                                                                             gATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCttttt                                                                >  1:4756517/1‑140 (MQ=255)

                                                                             gATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCttttt                                                                >  1:1240378/1‑140 (MQ=255)

                                                                                      cTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGaaaa                                                       <  1:1743472/140‑1 (MQ=255)

                                                                                       tgtgACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAAt                                                      >  1:4897737/1‑140 (MQ=255)

                                                                                        gtgACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAAtt                                                     >  1:4038175/1‑140 (MQ=255)

                                                                                            ccccATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTc                                                 <  1:2176898/140‑1 (MQ=255)

                                                                                              ccATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTAt                                                                                                 <  1:4727091/90‑1 (MQ=255)

                                                                                                atcatTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTcgcg                                                                                                                               >  1:291249/1‑58 (MQ=255)

                                                                                                atcatTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTcgcg                                                                                                                               <  2:291249/58‑1 (MQ=255)

                                                                                                atcatTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCGAGGAAAATTGCTCGaaa                                             >  1:1087209/1‑140 (MQ=255)

                                                                                                atcatTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGaaa                                             >  1:1674584/1‑140 (MQ=255)

                                                                                                 tcatTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAg                                            >  1:2090031/1‑140 (MQ=255)

                                                                                                 tcatTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGCCAACCTCTTTTTCAAGGAAAATTGCTCCAAAg                                            >  1:4115885/1‑140 (MQ=255)

                                                                                                   atTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTg                                          <  1:3002126/140‑1 (MQ=255)

                                                                                                    ttATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACTTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGa                                         <  1:4258618/140‑1 (MQ=255)

                                                                                                    ttATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGa                                         <  1:942789/140‑1 (MQ=255)

                                                                                                    ttAGGAGTGACGGGCTCTAACCAACTGGGCTACGTAGTCATCTTTCTTCTCGCGTTACGTTATCGGCGTTGTGGGGCGCATTATGCGTATAGATCCTTGCAGCGTCAACCTCTTCTTCGAGGAGAATTGCTAGAAAGTgt                                         <  2:650650/140‑2 (MQ=255)

                                                                                                     tATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGAc                                        <  2:1027017/140‑1 (MQ=255)

                                                                                                       tGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTg                                      >  2:3407427/1‑140 (MQ=255)

                                                                                                          gTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGttt                                   >  1:4482727/1‑140 (MQ=255)

                                                                                                          gTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGttt                                   >  2:2181480/1‑140 (MQ=255)

                                                                                                          gTGATGTGCTCTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTg                                  >  2:4107284/1‑140 (MQ=255)

                                                                                                           tGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTTAAGGAAAATTGCTCGAAAGTGACTGTTTg                                  >  2:2615631/1‑140 (MQ=255)

                                                                                                           tGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTg                                  >  2:414230/1‑140 (MQ=255)

                                                                                                           tGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTg                                  >  1:233235/1‑140 (MQ=255)

                                                                                                             aTGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATGCCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGt                                >  2:4018503/1‑140 (MQ=255)

                                                                                                             aTGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGt                                >  2:3373557/1‑140 (MQ=255)

                                                                                                             aTGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGt                                >  2:1234335/1‑140 (MQ=255)

                                                                                                             aTGTGCTCTAACCAACTGAGCGACGTAGCCATATTTTTTTTCGCGATACCTTCTCGGCATTGCGGGGCGCATTATGCGTATAGAGCCGTGCAGCGTACACCTCTTTTTCAAGGAAAATTGGGCGAAAGGGACGGTTTGGt                                >  2:923176/1‑140 (MQ=255)

                                                                                                              tgtgCTCTGACCAACGGCGCTACGCAGCCAGCTTCTTGTTCTCGTTACCGTATCGGCGTTGCGGGGCGCTTTATGCGTATAGAGCTTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGtt                               <  2:1926003/140‑1 (MQ=255)

                                                                                                              tgtgCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGtt                               <  1:1170680/140‑1 (MQ=255)

                                                                                                              tgtgCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGtt                               <  2:883758/140‑1 (MQ=255)

                                                                                                              tgtgCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGtt                               >  1:3653566/1‑140 (MQ=255)

                                                                                                              tgtgCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGtt                               <  2:2069236/140‑1 (MQ=255)

                                                                                                                   tctAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGtt                          <  2:3072259/140‑1 (MQ=255)

                                                                                                                   tctAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGtt                          <  2:1868324/140‑1 (MQ=255)

                                                                                                                   tctAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTGCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGtt                          <  1:3839210/140‑1 (MQ=255)

                                                                                                                     tAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTGTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGc                        >  1:4654662/1‑140 (MQ=255)

                                                                                                                       aCCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATATCTTATAGGCGTTGGGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTTTTTTTAAAGGAAAATTGCTCGAAAGAGAGTGTTTGGTTAGGTTGTGa                      >  2:2133873/1‑140 (MQ=255)

                                                                                                                       aCCAACTGAGCTACGTAGCCATCTTTTTTTTAGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACGGTTTGGTTAGGTTGCGa                      >  2:1438925/1‑140 (MQ=255)

                                                                                                                        ccAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGaa                     <  2:4972417/140‑1 (MQ=255)

                                                                                                                        ccAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGaa                     <  2:2591934/140‑1 (MQ=255)

                                                                                                                            cTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGAACAGc                 >  1:3120294/1‑140 (MQ=255)

                                                                                                                            cTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGAACAGc                 >  1:3216752/1‑140 (MQ=255)

                                                                                                                            cTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGAACAGc                 >  2:4547775/1‑140 (MQ=255)

                                                                                                                             tgtgttACGTAGCCCTCTTTTTTTTCGCGATACCTTATCGGGGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGAACAGCg                <  2:3880243/135‑1 (MQ=255)

                                                                                                                             tgtgCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGAACAGCg                <  1:387474/137‑1 (MQ=255)

                                                                                                                             tGAGCTCCGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGAACAGCg                <  2:2309817/140‑1 (MQ=255)

                                                                                                                             tGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGAACAGCg                <  1:1477105/140‑1 (MQ=255)

                                                                                                                             tGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGAACAGCg                <  1:2539236/140‑1 (MQ=255)

                                                                                                                             tGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCAATCTGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGAACAGCg                <  2:1292798/140‑1 (MQ=255)

                                                                                                                             tGAGCTACATAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGCGCCTTGCAGCGTCAACCTCTTTTTCCAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGAACAGCg                <  2:1844910/140‑1 (MQ=255)

                                                                                                                              gAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGAACAGCGt               <  1:2588836/140‑1 (MQ=255)

                                                                                                                               aGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGAACAGCGTg              >  2:1751594/1‑140 (MQ=255)

                                                                                                                               aGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGAACAGCGTg              >  1:3322257/1‑140 (MQ=255)

                                                                                                                               aGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGAACAGCGTg              >  2:4273660/1‑140 (MQ=255)

                                                                                                                                gCTACGTAGCCATCTTTTGTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGAACAGCGTgg             <  1:552819/140‑1 (MQ=255)

                                                                                                                                 cTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGGTGAGAACAGCGTGgc            >  1:1356122/1‑140 (MQ=255)

                                                                                                                                  tACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGAACAGCGTGgcg           <  1:1975144/140‑1 (MQ=255)

                                                                                                                                    cGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGAACAGCGTGGCGCt         >  2:4396646/1‑140 (MQ=255)

                                                                                                                                         ccATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTg                                                                                  >  1:186137/1‑62 (MQ=255)

                                                                                                                                         ccATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGAGCATTATGCGTATAGAGCCTTGCGGCGTCAACCGCTTTTTCAAGGAAAATTGCTAGAAAGTGACTGGTTGGTTAGGTTGCGAACAGCGTGGCGCGATAtt    >  2:2715617/1‑140 (MQ=255)

CTTGCGGCGCCAGAACCTAAATCTGGTGCGTCTACCAATTTCGCCACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCATCTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGAACAGCGTGGCGCTATATTCG  >  NZ_CP025268/696043‑696321

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.