| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 3,119,176 | T→C | T748A (ACA→GCA) | sslE ← | lipoprotein metalloprotease SslE |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 3,119,176 | 0 | T | C | 99.8% | 1344.8 / NA | 399 | T748A (ACA→GCA) | sslE | lipoprotein metalloprotease SslE |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (224/173); total (224/175) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.37e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 400 total aligned reads displayed.
GTACGGCAGCGCACCATCTACGGCAGGATAACGTTCATAGACCCAAATGCCCGTTGCGCGCTGCTGACGAACGCGGTTCGGATA‑CCCTTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGTGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGATTGCTCATCACGTTTTCCATGATCAGCACCGATCCACCTTTGTTCAGATAGGCGATCAGATCGGTCACATCCTGCTGAGTCAGCTTCGGTTTG > NZ_CP025268/3119039‑3119315 | aCGGCAGCGCACCATCTACGGCAGGATAACGTTCATAGACCCAAATGCCCGTTGCGCGCTGCTGACGAACGCGGTTCGGATA‑CCCTTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCa > 1:457498/1‑140 (MQ=255) aCGGCAGCGCACCATCTACGGCAGGATAACGTTCATAGACCCAAATGCCCGTTGCGCGCTGCTGACGAACGCGGTTCGGATA‑CCCTTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCa < 2:4601871/140‑1 (MQ=255) cgcACCATCTACGGCAGGATAACGTTCATAGACCCAAATGCCCGTTGCGCGCTGCTGACGAACGCGGTTCGGATA‑CCCTTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACa > 2:2978695/1‑140 (MQ=255) cgcACCATCTACGGCAGGATAACGTTCATAGACCCAAATGCCCGTTGCGCGCTGCTGACGAACGCGGTTCGGATA‑CCCTTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACa > 1:4031166/1‑140 (MQ=255) cgcACCATCTACGGCAGGATAACGTTCATAGACCCAAATGCCCGTTGCGCGCTGCTGACGAACGCGGTTCGGATA‑CCCTTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACa > 1:328996/1‑140 (MQ=255) cgcACCATCTACGGCAGGATAACGTTCATAGACCCAAATGCCCGTTGCGCGCTGCTGACGAACGCGGTTCGGATA‑CCCTTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACa > 2:2745634/1‑140 (MQ=255) cgcACCATCTACGGCAGGATAACGTTCATAGACCCAAATGCCCGTTGCGCGCTGCTGACGAACGCGGTTCGGATA‑CCCTTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACa > 1:252398/1‑140 (MQ=255) cgcACCATCTACGGCAGGATAACGTTCATAGACCCAAATGCCCGTTGCGCGCTGCTGACGAACGCGGTTCGGATA‑CCCTTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACa > 2:3522881/1‑140 (MQ=255) cgcACCATCTACGGCAGGATAACGTTCATAGACCCAAATGCCCGTTGCGCGCTGCTGACGAACGCGGTTCGGATA‑CCCTTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACa > 1:2216642/1‑140 (MQ=255) cgcACCATCTACGGCAGGATAACGTTCATAGACCCAAATGCCCGTTGCGCGCTGCTGACGAACGCGGTTCGGATA‑CCCTTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACa > 2:396181/1‑140 (MQ=255) cgcACCATCTACGGCAGGATAACGTTCATAGACCCAAATGCCCGTTGCGCGCTGCCGACGATC‑TTGCGCGTGTAGATCTTGCGGGTCGCCGTTTCATACCAACATGTTCAGTGCCACAGACAGACTTGCGGCATCAAACa > 2:4727008/1‑140 (MQ=255) cACCATCTACGGCAGGATAACGTTCATAGACCCAAGTGCCCGTTGCGCGCTGCTGACGAACGCGGTTCGGATA‑CCCTTGCGGATCGTTATTTACTACCGCCTTGTTCAGTGCCATCGACAGACCTGCGTCATCCAACAGa < 2:1519750/140‑1 (MQ=255) cACCATCTACGGCAGGATAACGTTCATAGACCCAAATGCCCGTTGCGCGCTGCTGACGAACGCGGTTCGGATA‑CCCTTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGa > 2:2038183/1‑140 (MQ=255) cACCATCTACGGCAGGATAACGTTCATAGACCCAAATGCCCGTTGCGCGCTGCTGACGAACGCGGTTCGGATA‑CCCTTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGa < 1:2969808/140‑1 (MQ=255) cATCTACGGCAGGATAACGTTCATAGACCCAAATGCCCGTTGCGCGCTGCTGACGAACGCGGGTCGGATA‑CCCTTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGc > 1:1561103/1‑140 (MQ=255) aGGATAACGTTCATAGACCCAAATGCCCGTTGCGCGCTGCTGACGAACGCGGTTCGGATA‑CCCTTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAg > 2:2670811/1‑140 (MQ=255) gATAACGTTCATAGACCCAAATGCCCGTTGCGCGCTGCTGACGAACGTGGGCGGGATA‑CCCTCGGGGATCGCTATTTACTAACGACTTGTTCAGTCCCATCGACAGACCTGCGGCATACAACAGACCCACAAAACCAGAc > 2:853647/1‑140 (MQ=255) gATAACGTTCATAGACCCAAATGCCCGTTGCGCGCTGCTGACGAACGCGGTTCGGATA‑CCCTTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGAc > 2:3767933/1‑140 (MQ=255) gATAACGTTCATAGACCCAAATGCCCGTTGCGCGCTGCTGACGAACGCGGTTCGGATA‑CCCTTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGAc > 2:4218739/1‑140 (MQ=255) gATAACGTTCATAGACCCAAATGCCCGTTGCGCGCTGCTGACGAACGCGGTTCGGATA‑CCCTTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGAc > 1:1265917/1‑140 (MQ=255) gATAACGTTCATAGACCCAAATGCCCGTTGCGCGCTGCTGACGAACGCGGTTCGGATA‑CCCTTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGAc < 2:4308264/140‑1 (MQ=255) gATAACGTTCATAGACCCAAATGCCCGTTGCGCGCTGCTGACGAACGCGGTTCGGATA‑CCCTTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGAc > 2:1818267/1‑140 (MQ=255) gATAACGTTCATAGACCCAAATGCCCGTTGCGCGCTGCTGACGAACGCGGTTCGGATA‑CCCTTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGAc > 2:1114503/1‑140 (MQ=255) gATAACGTTCATAGACCCAAATGCCCGTTGCGCGCTGCTGACGAACGCGGTTCGGATA‑CCCTTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGAc > 1:4120837/1‑140 (MQ=255) gATAACGTTCATAGACCCAAATGCCCGTTGCGCGCTGCTGACGAACGCGGTTCGGATA‑CCCTTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGAc > 2:5031383/1‑140 (MQ=255) gATAACGTTCATAGACCCAAATGCCCGTTGCGCGCTGCTGACGAACGCGGTTCGGATA‑CCCTTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGAc > 1:2343515/1‑140 (MQ=255) aaCGTTCATAGACCCAAATGCCCGTTGCGCGCTGCTGACGAACGCGGTTCGGATA‑CCCTTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGAcgcg < 1:2927349/140‑1 (MQ=255) gTTCATAGACCCAAATGCCCGCTGCGCGCTGCTGACGAACGCGGTTCGGATA‑CCCTTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGCCAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGctc < 2:4673094/140‑1 (MQ=255) ttCATAGACCCAAATGCCCGTTGCGCGCTGCTGACGAACGCGGTTCGGATA‑CCCTTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGctct < 1:592148/140‑1 (MQ=255) tCATCGACCCAAATGCCCGTTGCGCGCTGCTGACGAACGCGGTTCGGATA‑CCCTTGCCGACCGTTATTTACTACCGACTTGTTCAGTGACATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGctctc < 2:721093/140‑1 (MQ=255) tCATAGACCCAAATGCCCGTTGCGCGCTGCTGACGAACGCGGTTCGGATA‑CCCTTGCGTATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGctctc < 1:4261764/140‑1 (MQ=255) tCATAGACCCAAATGCCCGTTGCGCGCTGCTGACGAACGCGGTTCGGATA‑CCCTTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGctctc < 2:1431394/140‑1 (MQ=255) tCATAGACCCAAATGCCCGTTGCGCGCTGCTGACGAACGCGGTTCGGATA‑CCCTTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGctctc < 2:3682662/140‑1 (MQ=255) tCATAGACCCAAATGCCCGTTGCGCGCTGCTGACGAACGCGGTTCGGATA‑CCCTTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGctctc < 2:139763/140‑1 (MQ=255) tCATAGACCCAAATGCCCGTTGCGCGCTGCTGACGAACGCGGTTCGGATA‑CCCTTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGctctc < 2:3171088/140‑1 (MQ=255) tCATAGACCCAAATGCCCGTTGCGCGCTGCTGACGAACGCGGTTCGGATA‑CCCTTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGctctc < 1:705509/140‑1 (MQ=255) aTAGACCCAAATGCCCGTTGCGCGCTGCTGACGAACGCGGTTCGGATA‑CCCTTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCtt > 1:191224/1‑140 (MQ=255) aTAGACCCAAATGCCCGTTGCGCGCTGCTGACGAACGCGGTTCGCATA‑CCCGTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTGtt > 1:3173744/1‑140 (MQ=255) aaaTGCCCGTTGCGCGCTGCTGACGAACGCGGTTCGGATA‑CCCTTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGa > 1:2419617/1‑140 (MQ=255) aaTGCCCGTTGCGCGCTGCTGACGAACGCGGTTCGGATA‑CCCTTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGAt < 1:5031383/140‑1 (MQ=255) aaTGCCCGTTACGCGCTGCTGACGAACGCGGTTCGGATA‑CCCTTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGAt < 2:3806666/140‑1 (MQ=255) tGCCCGTTGCGCGCTGCTGACGAACGCGGTTCGGATA‑CCCTTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGATTg < 1:2887914/140‑1 (MQ=255) gTTGCGCGCTGCTGACGAACGCGGTTCGGATA‑CCCTTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGATTGCtcat < 1:1430200/140‑1 (MQ=255) gctgACGAACGCGGTTCGGATA‑CCCTTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAACACCAGACGCGCTCTCTTCCTTAAGATTGCTCATCACGTTTTcc < 2:4653606/140‑1 (MQ=255) gctgACGAACGCGGTTCGGATA‑CCCTTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGATTGCTCATCACGTTTTcc < 1:1599536/140‑1 (MQ=255) gctgACGAACGCGGTTCGGATA‑CCCTTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGATTGCTCATCACGTTTTcc < 1:4551572/140‑1 (MQ=255) gcggACGAACGCGGTTCGGATA‑CCCTTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGATTGCTCATCACGTTTTcc < 2:2592934/137‑1 (MQ=255) cgcgGTTGGGATG‑CTCTCGCGGGTCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGATTGCTCATCACGGTTTCCATGATCAGc > 2:4153135/1‑140 (MQ=255) cgcgGTTCGGATA‑CCCTTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGATTGCTCATCACGTTTTCCATGATCAGc > 2:4117099/1‑140 (MQ=255) cgcgGTTCGGATA‑CCCTTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGATTGCTCATCACGTTTTCCATGATCAGc > 2:3856401/1‑140 (MQ=255) cgcgGTTCGGATA‑CCCTTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGATTGCTCATCACGTTTTCCATGATCAGc > 2:4805276/1‑140 (MQ=255) cgccGTGCGGATA‑CGCTCGCGGATCGCTCCTTACCACCGACTTGTTCAGTGCCATCGACAGACCGGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGATTGCTCATCACGTTTTCCATGATCAGc > 2:2156059/1‑140 (MQ=255) cgGTTCGGATA‑CCCTTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAACCCAGACGCGCTCTCTTCCTTAAGATTGCTCATCACGTTTTCCATGATCAGCAc < 2:2448178/140‑1 (MQ=255) cgGTTCGGATA‑CCCTTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGATTGCTCATCACGTTTTcc < 1:3016498/129‑1 (MQ=255) cgGTTCGGATA‑CCCTTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGATTGCTCATCACGTTTTCCATGATCAGCAc < 2:1208155/140‑1 (MQ=255) cgGTTCGGATA‑CCCTTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGATTGCTCATCACGTTTTCCATGATCAGCAc > 1:3776734/1‑140 (MQ=255) cgGTTCGGATA‑CCCTTGCGGATCGTGATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCGTCCTTAAGATGGCTCATCACGTTTTCCATGATCAGCAc > 2:1591885/1‑140 (MQ=255) ttCGGATA‑CCCTTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGATTGCTCATCACGTTTTCCATGATCAGCACCGa > 2:606824/1‑140 (MQ=255) cGGATA‑CCCTTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGATTGCTCATCACGTTTTCCATGATCAGCACCGATc < 1:2045960/140‑1 (MQ=255) cGGATA‑CCCTTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGATTGCTCATCACGTTTTCCATGATCAGCACCGATc < 1:2127697/140‑1 (MQ=255) a‑CCCTTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGATTGCTCATCACGTTTTCCATGATCAGCACCGATCCACCt < 1:3149506/140‑1 (MQ=255) ttGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGATTGCTCATCACGTTTTCCATGATCAGCACCGATCCACCTTTGt < 2:2509828/140‑1 (MQ=255) tGCGGATCGTTATTTACTACCGACTTGGTCAGGGCCATCGACCGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGATTGCTCATCACGATTTCCATGATCAGCACCGATCCACCtttttt > 2:910868/1‑140 (MQ=255) gATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGATTGCTCATCACGTTTTCCATGATCAGCACCGATCCACCTTTGTTCAGa < 1:2585134/140‑1 (MQ=255) ctCGTTATTTACTACCGACTTGCTCAGTGCCATAGACAGACCTGCGGCATCCAACAGACGCACCAAACCAGACGCGCTCTCTTCCTTAAGATTGCTCATCACGTTTTCCATGATAAGCACCGATCCACCTTTGTTCAGAt < 2:1329509/139‑1 (MQ=255) aTCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGATTGCTCATCACGTTTTCCATGATCAGCACCGATCCACCTTTGTTCAGAt > 1:4888318/1‑140 (MQ=255) tCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGATTGCTCATCACGTTTTCCATGATCAGCACCGATCCACCTTTGTTCAGATa < 1:4845489/140‑1 (MQ=255) cGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGATTGCTCATCACGTTTTCCATGATCAGCACCGATCCACCTTTGTTCAGATAg > 1:3469871/1‑140 (MQ=255) cGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGATTGCTCATCACGTTTTCCATGATCAGCACCGATCCACCTTTGTTCAGATAg > 1:4802446/1‑140 (MQ=255) cGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGATTGCTCATCACGTTTTCCATGATCAGCACCGATCCACCTTTGTTCAGATAg > 1:3969647/1‑140 (MQ=255) tttACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGATTGCTCATCACGTTTTCCATGATCAGCACCGATCCACCTTTGTTCAGATAGGCGAt < 1:3392764/140‑1 (MQ=255) ttACTACCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGATTGCTCATCACGTTTTCCATGATCAGCACCGATCCACCTTTGTTCAGATAGGCGATc < 1:3711814/140‑1 (MQ=255) actacCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCCGACGCGCTCTCTTCCTTAAGATTGCTCCTCACGTTTTCCATGATCAGCACCGATCCACCTTTGTTCAGATCGGCGATCAg > 1:2842460/1‑140 (MQ=255) actacCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGATTGCTCATCACGTTTTCCATGATCAGCACCGATCCACCTTTGTTCAGATAGGCGATCAg < 1:2672477/140‑1 (MQ=255) ctacCGACTTGTTCAGTGCCATCGACAGACCTGCCGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGATTGCTCATCACGTTTTCCATGATCAGCACCGATCCACCTTTGTTCAGATAGGCGATCAGa < 2:1672265/140‑1 (MQ=255) ttccGACTTGTTCAATGCCATCGACAGACCTGCGGCATCCCACCGACGCACAAAACCAGACGCGCTCTCCTCCTTAAGATTGCTCATCCCGTTCTCCATGATCAGCACCGACCCACCTTTGTTCAGCTAGGCGATCAGAt < 2:2870514/138‑1 (MQ=255) tacCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGATTGCTCATCACGTTTTCCATGATCAGCACCGATCCACCTTTGTTCAGATAGGCGATCAGAt < 2:4466108/140‑1 (MQ=255) tacCGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGATTGCTCATCACGTTTTCCATGATCAGCACCGATCCACCTTTGTTCAGATAGGCGATCAGAt > 1:3894405/1‑140 (MQ=255) ccGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGATTGCTCATCACGTTTTCCATGATCAGCACCGATCCACCTTTGTTCAGATAGGCGATCAGATCg > 1:4303200/1‑140 (MQ=255) cGACTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGATTGCTCATCACGTTTTCCATGATCAGCACCGATCCACCTTTGTTCAGATAGGCGATCAGATCgg > 1:4610277/1‑140 (MQ=255) aCTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTGTCTTCCTTAAGATTGCTCATCACGTTTTCCATGATCAGCACCGATCCACCTTTGTTCAGATAGGCGATCAGATCGGTc < 1:1003786/140‑1 (MQ=255) aCTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGATTGCTCATCACGTTTTCCATGATCAGCACCGATCCACCTTTGTTCAGATAGGCGATCAGATCGGTc > 2:349465/1‑140 (MQ=255) aCTTGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGATTGCGCATCACGTTTTCCATGATCAGCACCGATCCACCTTTGTTCAGATAGGCGATCAGATCGGTc > 2:228052/1‑140 (MQ=255) ttGTTCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGATTGCTCATCACGTTTTCCATGTTCACCACCGATCCACCTTTGTTCAGATAGGCGATCAGATCGGTcac < 1:3584379/140‑1 (MQ=255) ttCAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGATTGCTCATCACGTTTTCCATGATCAGCACCGATCCACCTTTGTTCAGATAGGCGATCAGATCGGTCACATc > 1:1798656/1‑140 (MQ=255) cAGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGATTGCTCATCACGTTTTCCATGATCAGCACCGATCCACCTTTGTTCAGATAGGCGATCAGATCGGTCACATCct > 2:3233621/1‑140 (MQ=255) aGTGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGATTGCTCATCACGTTTTCCATGATCAGCACCGATCCACCTTTGTTCAGATAGGCGATCAGATCGGTCACATCctg < 1:4746220/140‑1 (MQ=255) tGCCATCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGATTGCTCATCACGTTTTCCATGATCAGCACCGATCCACCTTTGTTCAGATAGGCGATCAGATCGGTCACATCctgct > 2:1066783/1‑140 (MQ=255) aTCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGATTGCTCATCACGTTTTCCATGATCAGCACCGATCCACCTTTGTTCAGATAGGCGATCAGATCGGTCACATCCTGCTGAGt < 2:2321113/140‑1 (MQ=255) aTCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGATTGCTCATCACGTTTTCCATGATCAGCACCGATCCACCTTTGTTCAGATAGGCGATCAGATCGGTCACATCCTGCTGAGt < 1:4988943/140‑1 (MQ=255) tCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGATTGCTCATCACGTTTTCCATGATCAGCACCGATCCACCTTTGTTCAGATAGGCGATCAGATCGGTCACATCCTGCTGAGTc > 1:1735741/1‑140 (MQ=255) tCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGATTGCTCATCACGTTTTCCATGATCAGCACCGATCCACCTTTGTTCAGATAGGCGATCAGATCGGTCACATCCTGCTGAGTc > 2:2115122/1‑140 (MQ=255) tCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGATTGCTCATCACGTTTTCCATGATCAGCACCGATCCACCTTTGTTCAGATAGGCGATCAGATCGGTCACATCCTGCTGAGTc > 2:3330875/1‑140 (MQ=255) tCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGATTGCTCATCACGTTTTCCATGATCAGCACCGATCCACCTTTGTTCAGATAGGCGATCAGATCGGTCACATCCTGCTGAGTc > 1:3507967/1‑140 (MQ=255) tCGACAGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGATTGCTCATCACGTTGTCCATGATCAGCACCGATCCACCTTTGTTCAGATAGGCGATCAGATCGGTCACATCCTGCTGAGTc > 2:301281/1‑140 (MQ=255) aGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGATTGCTCATCACGTTTTCCATGATCAGCAc > 1:4468302/1‑83 (MQ=255) aGACCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGATTGCTCATCACGTTTTCCATGATCAGCACCGATCCACCTTTGTTCAGATAGGCGATCAGATCGGTCACATCCTGCTGAGTCAGCtt > 2:4891856/1‑140 (MQ=255) aCCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGATTGCTCATCACGTTTTCCATGATCAGCACCGATCCACCTTTGTTCAGATAGGCGATCAGATCGGTCACATCCTGCTGAGTCAGCTTCg > 1:915709/1‑140 (MQ=255) aCCTGCGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGATTGCTCATCACGTTTTCCATGATCAGAACCGATCCACCTTTGTTCAGATAGGCGATCAGATCGGTCACATCCTGCTGAGTCAGCTTCg > 2:4869210/1‑140 (MQ=255) tgGCAACCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGATTGCTCATCACGTTTGCCATGATCAGCACCGATCCACCTTTGTTCATATAGGCGATCAGATCGGTCACATCCTGCTGAGTCAGCTTCGGTTTg < 2:4503553/140‑1 (MQ=255) | GTACGGCAGCGCACCATCTACGGCAGGATAACGTTCATAGACCCAAATGCCCGTTGCGCGCTGCTGACGAACGCGGTTCGGATA‑CCCTTGCGGATCGTTATTTACTACCGACTTGTTCAGTGCCATCGACAGACCTGTGGCATCCAACAGACGCACAAAACCAGACGCGCTCTCTTCCTTAAGATTGCTCATCACGTTTTCCATGATCAGCACCGATCCACCTTTGTTCAGATAGGCGATCAGATCGGTCACATCCTGCTGAGTCAGCTTCGGTTTG > NZ_CP025268/3119039‑3119315 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |