| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 3,864,419 | T→C | pseudogene (1103/1613 nt) | CXP41_RS20140 ← | PTS sugar transporter subunit IIB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 3,864,419 | 0 | T | C | 99.7% | 1237.9 / NA | 369 | pseudogene (1103/1613 nt) | CXP41_RS20140 | PTS sugar transporter subunit IIB |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (194/172); total (196/173) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.71e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 369 total aligned reads displayed.
GTGCACATGTTGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGA‑CCTCCG‑CC‑ATGTT‑‑‑CACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGG > NZ_CP025268/3864282‑3864546 | tGCACATGTTGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAg < 2:3626459/140‑1 (MQ=255) tGCACATGTTGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGAATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAg < 1:2181177/140‑1 (MQ=255) cacaTGTTGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTc < 1:4765310/140‑1 (MQ=255) cacaTGTTGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTc > 2:4174145/1‑140 (MQ=255) aTGTTGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACACCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAAt < 1:1876619/140‑1 (MQ=255) gTTGAACTGCAGAATCAGTGTTCGG‑AAACGACGAAGTACAGCAGGGTAGCGCACAACCCAATGGCGATTTGGGTCAGCAGCATATCCGCGGGGTTGCTTAACAGCTGGATCCAGTTATGCGGTAGAACCTAGTCAATCAg > 2:488564/1‑140 (MQ=255) ttGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAg > 1:660828/1‑140 (MQ=255) gAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑c > 2:2347032/1‑140 (MQ=255) aCTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCt > 1:4318761/1‑140 (MQ=255) cTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTc > 1:340968/1‑140 (MQ=255) gCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCg < 2:2519619/140‑1 (MQ=255) gCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCg > 2:1552669/1‑140 (MQ=255) cAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCG‑c > 2:2885322/1‑140 (MQ=255) cAGAATCAGTGTGCGGAAAACCACCAACCACACCACGGTAAAGCACAACCCAATCGCGATTGGGGCCAGCATCATATCCGCCTGGTCCCCGAACATCGCGATCCAGTTCTGCCGCAAAACCTACTCAATCAGA‑CCTCCG‑c < 1:2891314/140‑1 (MQ=255) tCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCG‑cccatg > 1:793359/1‑136 (MQ=255) tCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCG‑cccatg > 1:1064659/1‑136 (MQ=255) tCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCG‑cccatg > 1:2674495/1‑136 (MQ=255) tCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCG‑cccatg < 1:2373740/140‑5 (MQ=255) tCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGGCAGCATCATAACCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTACG‑cccagg > 2:1639879/1‑136 (MQ=255) aGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGtt < 2:1334507/140‑1 (MQ=255) gtgCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcc < 1:1567296‑M1/140‑4 (MQ=255) gtgCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcc > 2:3499282‑M1/1‑137 (MQ=255) gtgCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcc > 1:1758043‑M1/1‑137 (MQ=255) gtgCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcc > 2:4732872‑M1/1‑137 (MQ=255) gtgCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCG‑c > 2:2095432/1‑130 (MQ=255) gtgCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCG‑c < 1:2095410/130‑1 (MQ=255) gtgCGGAAAACCACGAAGTACAGCAGGGGAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcc > 1:3757293‑M1/1‑137 (MQ=255) gCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgccca < 1:928785‑M1/140‑6 (MQ=255) gCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTCGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgccca < 2:4092235‑M1/140‑6 (MQ=255) cGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccac < 1:3158139‑M1/140‑7 (MQ=255) aaCCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacac < 1:3977572‑M1/140‑12 (MQ=255) aaCCACGAAGTACAGCAGGGTAAAGCACAACCAAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTCGCTAAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCG‑CCAATGTTgcccaccacac < 2:325543‑M1/140‑12 (MQ=255) aCCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCTGCCC‑ATCTTgcccaccacacc > 2:729473‑M1/1‑128 (MQ=255) aCCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacacc > 1:3835810‑M1/1‑128 (MQ=255) aCCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacacc > 2:2046279‑M1/1‑128 (MQ=255) aCCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTGGTGCGGTAAAACCGAGTCAATGAGA‑CCTCCGCCC‑ATGTTgcccaccacacc > 1:3242002‑M1/1‑128 (MQ=255) ccACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacacca < 2:1289711‑M1/140‑14 (MQ=255) ccACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacacca < 2:4290124‑M1/140‑14 (MQ=255) cACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacaccaa > 1:4403196‑M1/1‑126 (MQ=255) aCGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacaccaaa < 2:22526‑M1/140‑16 (MQ=255) cGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGGCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacaccaaag < 1:2516654‑M1/140‑17 (MQ=255) aaGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑CTGTTgcccaccacaccaaagag < 1:3894233‑M1/140‑19 (MQ=255) aGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACCTCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacaccaaagaga < 2:1185764‑M1/140‑20 (MQ=255) aGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacaccaaagaga < 1:1872364‑M1/140‑20 (MQ=255) cagcagGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacaccaaagagataca < 2:1730562‑M1/140‑24 (MQ=255) ggTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacgg > 2:4612688‑M1/1‑111 (MQ=255) gTAAAGCCCAACCCACTGGCGATTTGGGTCAGCTTCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTCGTCAATCAGA‑CTTCCGCCC‑ATGTTgcccaccacaccacagagatacattacggt < 2:650635‑M1/140‑31 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtc < 2:4141372‑M1/140‑32 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtc > 1:1139268‑M1/1‑109 (MQ=255) tAAACCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTGGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtc > 2:4707275‑M1/1‑109 (MQ=255) aaaGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcg < 1:825835‑M1/140‑33 (MQ=255) aaGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcga > 1:2867369‑M1/1‑107 (MQ=255) aGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgac > 1:172631‑M1/1‑106 (MQ=255) aGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACAGCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgac > 1:1013867‑M1/1‑106 (MQ=255) cacaACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacat > 2:4856945‑M1/1‑104 (MQ=255) aaCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattga > 2:3033011‑M1/1‑101 (MQ=255) aaCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattga > 1:211859‑M1/1‑101 (MQ=255) aCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgag < 2:3839617‑M1/140‑41 (MQ=255) aCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgag < 1:4958041‑M1/140‑41 (MQ=255) cccAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑CTGTTgcccaccacacccaagagatacattacggtcgacattgcgg > 2:3854875‑M1/1‑99 (MQ=255) cccAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccacca < 2:1375784‑M1/107‑9 (MQ=255) cccAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccacca > 1:1375784‑M1/1‑99 (MQ=255) aTGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgc < 1:4204504‑M1/140‑46 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 2:79144‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 1:4889798‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 1:4847273‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacaccaaacagatacattacggtcgacattgaggccgccagc < 2:892472‑M1/140‑50 (MQ=255) cGATTTGGGTCAGAATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 2:4482597‑M1/140‑50 (MQ=255) aTTTGGGTCAGCATCATCTCCGCGTGGTTGCTGAACATCGGGATTCCGTTTTGCGGTAACACCTCGTCAATCAGACCCCCCC‑CC‑ATGTTgcccaccacaccaaagggatacattacggtcgacattgaggccgccagcac > 2:2170153‑M1/1‑89 (MQ=255) aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcac > 1:871195‑M1/1‑89 (MQ=255) aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcac > 2:3383748‑M1/1‑89 (MQ=255) aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcac > 2:2993628‑M1/1‑89 (MQ=255) ttttgttcagcatCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacaccgaagagatacattacggtcgacattgaggccgccagcacg < 2:2635092‑M1/134‑53 (MQ=255) tttGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacg > 1:1647020‑M1/1‑88 (MQ=255) tGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggc < 2:3165508‑M1/140‑55 (MQ=255) catcatATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccg > 1:3696426‑M1/1‑78 (MQ=255) tcatATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgca < 1:3560770‑M1/140‑65 (MQ=255) tcatATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgca < 2:4254847‑M1/140‑65 (MQ=255) atatCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaa < 1:3623380‑M1/140‑67 (MQ=255) atatCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaa < 1:4076180‑M1/140‑67 (MQ=255) tatCCGCGTGGTTGCTGAACATCGGGAGCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtgccgcaaac > 2:3751419‑M1/1‑73 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaa < 1:3037757‑M1/140‑73 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaa > 2:102165‑M1/1‑68 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGGAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaa > 1:4974939‑M1/1‑68 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTCTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgacgccgccagcacggcgtgtcccgcacaccgcaa > 2:3830056‑M1/1‑68 (MQ=255) cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaac > 1:3348428‑M1/1‑67 (MQ=255) cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaac > 2:1909433‑M1/1‑67 (MQ=255) gTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacg > 1:4680471‑M1/1‑66 (MQ=255) gTGGTTGCTGAACATCGGGATCCAGCTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcacacagcaacg > 1:3513471‑M1/1‑66 (MQ=255) tGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacgg > 1:2022469‑M1/1‑65 (MQ=255) gCTGAACATAGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATTTTGCCCACCACACTAAAGAGATACATTACGGTCGGCATTGAGGCCGCCAGCACGGCGTGTACCGGAAACAGCAACGGTGaaa > 2:1172419/1‑140 (MQ=255) tGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatg < 2:660990‑M1/140‑83 (MQ=255) tCGTGATCCATTTTTGCGGTAAACTCTAGTCAATCGGA‑CCTCCG‑CCTATGTTGCCCACCTCACCAAAGAGATACATTACGGTCGACAGTGAGGCCGCCAGCACGGCGAGTACCGCAAACAGCAAGGGTGAAGTGAACAgg > 2:4229331/1‑140 (MQ=255) tCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagg > 1:610317‑M1/1‑52 (MQ=255) cGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagga < 2:2948514‑M1/140‑90 (MQ=255) cGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagga < 2:2446644‑M1/140‑90 (MQ=255) ggATCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaag > 2:3331231‑M1/1‑49 (MQ=255) tCCAGTTTTGCGGTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggta < 2:1209115‑M1/140‑95 (MQ=255) ggTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcgg < 2:2607914‑M1/140‑106 (MQ=255) ggTAAAACCTAGTCAATCAGA‑CCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcgg < 1:1414050‑M1/140‑106 (MQ=255) | GTGCACATGTTGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGA‑CCTCCG‑CC‑ATGTT‑‑‑CACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGG > NZ_CP025268/3864282‑3864546 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |