| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 4,641,859 | A→G | S119P (TCC→CCC) | arcA ← | two‑component system response regulator ArcA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 4,641,859 | 0 | A | G | 99.0% | 1039.1 / ‑0.8 | 314 | S119P (TCC→CCC) | arcA | two‑component system response regulator ArcA |
| Reads supporting (aligned to +/- strand): ref base A (1/2); new base G (184/127); total (185/129) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.70e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.75e-01 | |||||||||||
Only 100 of 314 total aligned reads displayed.
TGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGACAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGACTTCGTTGTCACGGCCAGTCAGGAACATCAACGCAACATT > NZ_CP025268/4641724‑4641994 | gcgcGGCAGCTTGTACTGCTCGCCATCGGGGCCGATCAACGAACGGCTATTGATGTCCAGTTCCCAACCATTGAACTTGTAGCCTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACTGGGCAGTa > 2:3744088/1‑140 (MQ=255) aGCTTGTACTGCTCGCCATCAGGGACGATCAACGAACGGCTGTTGATGTCCAGTTCCAAACCATTGAACTTGTAGATTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCg < 2:3035262/140‑1 (MQ=255) cTTGTACTGCTCGCCATGAGGGCCGCTCAACGAACGGCTGTTGATGTCCAGTTCCCAAGCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTg < 2:4622849/140‑1 (MQ=255) tGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCa < 1:2507891/140‑1 (MQ=255) tGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCa < 1:132754/140‑1 (MQ=255) cTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTCGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCg > 1:2688505/1‑140 (MQ=255) cTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCg > 2:893709/1‑140 (MQ=255) cTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCg > 1:659441/1‑140 (MQ=255) cTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCg > 1:1853378/1‑140 (MQ=255) cTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCg > 1:1525856/1‑140 (MQ=255) cTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCg > 2:4635748/1‑140 (MQ=255) cTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGGAGGTTGCGTGCACGAATCg > 1:2182129/1‑140 (MQ=255) cTCGCCATCAGGGCCGATCAACGAACGGCTGTTGAGGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGCAGGTTGCGTGCACGAATCg > 1:3572921/1‑140 (MQ=255) cTCGCCATCAGGGCCGATCAACGAACGGCTGTCGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACGCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAACCg > 2:246890/1‑140 (MQ=255) tCGCCATCGGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGt < 2:1003436/140‑1 (MQ=255) tCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACACAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGt < 1:2762557/140‑1 (MQ=255) cGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTc > 2:424884/1‑140 (MQ=255) cATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGt > 2:4778023/1‑140 (MQ=255) cATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGt > 1:4573712/1‑140 (MQ=255) cATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGt > 2:439260/1‑140 (MQ=255) gggCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCAcg > 1:4063888/1‑140 (MQ=255) gggCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCAcg > 1:3023290/1‑140 (MQ=255) ggCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCAcgc < 1:437139/140‑1 (MQ=255) ggCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCAcgc < 1:4851698/140‑1 (MQ=255) ccGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCgg > 1:3424384/1‑140 (MQ=255) cGATCAACTAACGGCTGTTGATGTCCAGTTCCCAAGTATTGAACTTGTCGCTTTCAACGCTACGACGTTCTTCGCTGACAGTCCCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCggg < 2:1691945/140‑1 (MQ=255) gATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACTCTACGACGTTCTTCGCTGACCGTACCCAGATTCCTTGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGCTCACGCGGGt > 1:2231452/1‑140 (MQ=255) gATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACCGTACCCAGATTCATGGTACGGGGCAGGAGGTTGCGTGCCCGAATCGGCAGTTCACGCTGGt > 2:535900/1‑140 (MQ=255) gATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGt > 1:4727196/1‑140 (MQ=255) gATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGt > 1:3082347/1‑140 (MQ=255) gATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGt > 1:3783326/1‑140 (MQ=255) gATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGt > 2:2274222/1‑140 (MQ=255) aTCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGtt > 1:318230/1‑140 (MQ=255) aTCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGtt > 2:213284/1‑140 (MQ=255) tCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTg > 2:1810580/1‑140 (MQ=255) cAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGa > 1:1904017/1‑140 (MQ=255) aacgaacgGCTGTTGATGTGCAGTTCCCAACCATTGAACTTGTAGCTTTCACCGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGaa < 1:738881/140‑1 (MQ=255) aacgaacgGCTGTTGATGTCCAGTTCCCAACCATTGCACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGaa < 2:2054193/140‑1 (MQ=255) aacgaacgGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGaa < 2:3453919/140‑1 (MQ=255) aacgaacgGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGaa < 2:669534/140‑1 (MQ=255) aacgaacgGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGaa < 2:598500/140‑1 (MQ=255) aacgaacgGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGaa < 1:4912388/140‑1 (MQ=255) aacgaacgGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGaa < 2:3214732/140‑1 (MQ=255) aacgaacgGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGaa < 1:1728153/140‑1 (MQ=255) aacgaacgGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGaa < 1:604006/140‑1 (MQ=255) aacgaacgGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGaa < 1:1276585/140‑1 (MQ=255) aacgaacgGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGaa < 2:3259135/140‑1 (MQ=255) cgaacgGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACg > 1:3977656/1‑140 (MQ=255) tcgGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGtt < 1:4515087/139‑1 (MQ=255) acgGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGtt < 1:1004733/140‑1 (MQ=255) acgGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGtt < 2:3333872/140‑1 (MQ=255) ggCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTg > 2:2493936/1‑140 (MQ=255) gCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTgg < 2:3554938/140‑1 (MQ=255) tGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTg < 1:3309959/140‑1 (MQ=255) tGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGCACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTg < 2:3641117/140‑1 (MQ=255) ttGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGAt < 2:1293918/140‑1 (MQ=255) aTGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTa < 2:4956921/140‑1 (MQ=255) aTGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTa < 1:935495/140‑1 (MQ=255) aTGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTa < 1:2953461/140‑1 (MQ=255) gTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGGGCACGAATCGTCAGTTCACGCGGGGTGAACGGTGTGGTGATGTAGTCATCt > 2:2898256/1‑140 (MQ=255) cccAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCa < 1:4194901/140‑1 (MQ=255) aaCCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCg > 2:3705409/1‑140 (MQ=255) aaCCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCg > 2:3690289/1‑140 (MQ=255) aaCCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCg > 1:1003523/1‑140 (MQ=255) ttGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACTCAGATTCATGGTCCGGGGCAGTAGGTTGCGTTCACGAATAGTCAGTTTACGCGGGTTGAACGTTTTGGTGATGTAGTCATTTGCACCGATTTc > 2:1128273/1‑140 (MQ=255) ttGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTc > 2:1163017/1‑140 (MQ=255) ttGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTc > 1:2102468/1‑140 (MQ=255) ttGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTc > 1:3845869/1‑140 (MQ=255) aaCTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAg > 1:285601/1‑140 (MQ=255) gTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCga < 1:5066661/140‑1 (MQ=255) gTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCga > 1:240646/1‑140 (MQ=255) tCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCa > 1:4462095/1‑117 (MQ=255) tCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCa < 2:4462095/117‑1 (MQ=255) tCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAAtttt > 1:3581980/1‑140 (MQ=255) tCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAAtttt > 1:949112/1‑140 (MQ=255) aaCGCCACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTAt < 1:1189885/140‑1 (MQ=255) gCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGa < 2:5089899/140‑1 (MQ=255) tACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGACt > 2:3466908/1‑140 (MQ=255) gacgTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGACTTCg < 1:1151948/140‑1 (MQ=255) tcttcGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGACTTCGTTGTc > 1:3482704/1‑140 (MQ=255) ttcGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGACTTCGTTGTCAc > 2:2221127/1‑140 (MQ=255) cGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGACTTCGTTGTCACgg > 2:4185992/1‑140 (MQ=255) gCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCCGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGACTTCGTTGTCACGGc < 2:821273/140‑1 (MQ=255) gCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGACTTCGTTGTCACGGc < 1:424884/140‑1 (MQ=255) tGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGACTTCGTTGTCACGGCCa < 2:1584975/140‑1 (MQ=255) aGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGACTTCGTTGTCACGGCCAGTCa > 1:3259745/1‑140 (MQ=255) aCCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGACTTCGTTGTCACGGCCAGTCAGGa > 1:2384166/1‑140 (MQ=255) aTTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGACTTCGTTGTCACGGCCAGTCAGGAACATCa > 1:858611/1‑140 (MQ=255) cATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGACTTCGTTGTTACGGCCAGTCAGGAACATCAACg < 2:1347314/140‑1 (MQ=255) cATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGACTTCGTTGTCACGGCCAGTCAGGAACATCAACg < 2:3932913/140‑1 (MQ=255) cATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGACTTCGTTGTCACGGCCAGTCAGGAACATCAACg > 2:404835/1‑140 (MQ=255) cATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGACTTCGTTGTCACGGCCAGTCAGGAACATCAACg < 2:3814815/140‑1 (MQ=255) cATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGACTTCGTTGTCACGGCCAGTCAGGAACATCAACg < 1:1395048/140‑1 (MQ=255) cATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGACTTCGTTGTCACGGCCAGTCAGGAACATCAACg > 2:1482669/1‑140 (MQ=255) cATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGACTTCGTTGTCACGGCCAGTCAGGAACATCAACg > 1:539628/1‑140 (MQ=255) cATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGACTTCGTTGTCACGGCCAGTCAGGAACATCAACg > 2:2696882/1‑140 (MQ=255) tGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGACTTCGTTGTCACGGCCAGTCAGGAACATCAACGCa > 1:766343/1‑140 (MQ=255) cGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGACTTCGTTGTCACGGCCAGTCAGGAACATCAACGCAACAtt > 1:4820925/1‑140 (MQ=255) cGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGACTTCGTTGTCACGGCCAGTCAGGAACATCAACGCAACAtt > 1:4483855/1‑140 (MQ=255) cGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGACTTCGTTGTCACGGCCAGTCAGGAACATCAACGCAACAtt > 1:2573151/1‑140 (MQ=255) | TGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGACAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGACTTCGTTGTCACGGCCAGTCAGGAACATCAACGCAACATT > NZ_CP025268/4641724‑4641994 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |