| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 1,690,360 | (C)5→6 | pseudogene (1047/1403 nt) | fumC ← | class II fumarate hydratase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 1,690,355 | 1 | . | C | 97.2% | 1152.4 / 22.1 | 364 | pseudogene (1052/1403 nt) | fumC | class II fumarate hydratase |
| Reads supporting (aligned to +/- strand): ref base . (6/4); new base C (142/209); total (150/214) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.28e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 380 total aligned reads displayed.
TTCGCTCACGATTCGGTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑G‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTCCGGGATTGAGATTTC > NZ_CP025268/1690216‑1690485 | ttCGCTCACGATTCGGTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAgc‑g > 1:1669377/1‑140 (MQ=255) tCGCTCACGATTCGGTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAgc‑g‑c < 2:304734/140‑1 (MQ=255) tCGCTCACGATTCGGTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAgc‑g‑c < 1:2015800/140‑1 (MQ=255) gCTCACGATTCGGTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCAAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑G‑c‑cc < 2:199217/140‑1 (MQ=255) tCACGATTCGGTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑G‑c‑ccc‑c > 1:5239046/1‑140 (MQ=255) tCACGATTCGGTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑G‑c‑ccc‑c > 1:1876974/1‑140 (MQ=255) ggTTCAATACCCACTGCGCAGTGTTTGTTCAAACTTTCCATGCCATCGGCCCGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAAACGGTCAGTTCAAAGTTCCCGTACGC‑GCC‑CCC‑CATGTTGAt > 2:2149835/1‑140 (MQ=255) tACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCAcg < 2:2218346/140‑1 (MQ=255) tACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCAcg > 1:1192293/1‑140 (MQ=255) tACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCAcg < 1:2920816/140‑1 (MQ=255) tACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCAcg > 2:3622096/1‑140 (MQ=255) tACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGCTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCAcg < 1:17503/140‑1 (MQ=255) aCCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCAcgt < 2:2956229/140‑1 (MQ=255) ccACTGCGCACTGTCTGCTAAAACCTCCCATGCCATCCGCCAGCAAGCGCACCGATTGCAGGAAACCGTGGCTCACCATCGGCCGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCAcgtcg > 2:2861633/1‑140 (MQ=255) cACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCAcgtcgt < 2:143961/140‑1 (MQ=255) accgcgcATTGTTTGCTAAAACTTTACCTGCCATCTGCCAGCAAGCGCACTGATTGCAGTAACTTGTGCATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCAC‑C‑CCC‑CATGTTGATCGGCACGTCGtt > 2:2526449/4‑140 (MQ=255) aCTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGtt > 1:3539930/1‑140 (MQ=255) aCTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGtt > 2:5074661/1‑140 (MQ=255) aCTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGtt > 1:1288710/1‑140 (MQ=255) aCTGCGCAGTGTTTGTTAAAACTTTCCATGCCAGCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGtt > 1:4271425/1‑140 (MQ=255) aCTGCGCAGTGGTTGTTAAAACATTCCATGCCATCTGACAGCAAGCTCAACGATTGCAGGACATTGTGGAGCACCAGTGGACGGAATACATTCAGTTCAAAGTTACCGGCAGC‑G‑CACCC‑CATGTTGATCGCCACGTCttt > 2:2729367/1‑140 (MQ=255) tGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTcc > 2:3564810/1‑140 (MQ=255) tGCGCAGTGGTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTcc > 1:1624104/1‑140 (MQ=255) gcgcAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTccc < 2:4475344/140‑1 (MQ=255) gcgcAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTccc > 1:1602470/1‑140 (MQ=255) cAGTGTTTGTTAAGACTTTCCTTGCCATCTGCCAGCAAGCGCACCGATTGCAGAAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCTC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCAt < 2:4579484/140‑1 (MQ=255) cAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCAt < 1:3195452/140‑1 (MQ=255) cAGTGGTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCACGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAGAGTTCCCGGAACC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCAt < 2:2366778/140‑1 (MQ=255) aGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATc > 1:2407916/1‑140 (MQ=255) gtgtTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCa > 1:2459685/1‑140 (MQ=255) gtgtTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCa < 1:3905322/140‑1 (MQ=255) gtgtTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTCGAGCACCATTCGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGGCACGTCGTGCCCCATCa < 2:4934372/140‑1 (MQ=255) tttgttAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGCTTGCAGGACATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GAC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCt < 1:4388378/140‑1 (MQ=255) tttgttAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCt < 2:538607/140‑1 (MQ=255) tttgttAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCt > 2:2582929/1‑140 (MQ=255) tgttAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGa < 2:1813604/140‑1 (MQ=255) gttAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGAc > 2:1261886/1‑140 (MQ=255) tAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGAcag < 1:1941498/140‑1 (MQ=255) tAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGAcag < 1:5344534/140‑1 (MQ=255) tAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGAcag < 2:410598/140‑1 (MQ=255) aaaCTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGAcagca < 1:2553772/140‑1 (MQ=255) aaaCTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGAcagca < 2:1951957/140‑1 (MQ=255) aaCTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCAt < 2:4236519/127‑1 (MQ=255) aaCTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGAcagcag > 1:4569200/1‑140 (MQ=255) aaCTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGAcagcag > 1:1506272/1‑140 (MQ=255) aaCTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGAcagcag > 2:693461/1‑140 (MQ=255) aaCTTTCCATGCCAGCTGCCAGCAAGCGCAGCGATTGCCGGAAATTGGGGAACACAAGTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑G‑C‑CCCGCATGTTGATCGCCACGTCGTTCACCATCAGCTGAcagcag > 2:3336058/1‑140 (MQ=255) tttCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGc < 2:4651518/140‑1 (MQ=255) tttCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGc < 1:1141155/140‑1 (MQ=255) ttCCATGCGAGCTGCCGGCCAGCGCACCGATTGCAGGAAATTGTGGATCCAGATTGGTCGGGAGACGTTCAGTTCAAAGTTACCGGGAGC‑GCC‑CCC‑CATGTTGATCGCAACGTCGTTCCCCATCACCTGACCGCAGGGCa < 2:3472326/140‑1 (MQ=255) ttCCATGCCATCTGCCAGCAAGCGCATCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCa < 2:5445515/140‑1 (MQ=255) ttCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCa < 2:388928/140‑1 (MQ=255) ccATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATg > 1:938207/1‑140 (MQ=255) aTGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGt < 1:4209218/140‑1 (MQ=255) gCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGGAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTa < 1:4805951/140‑1 (MQ=255) gCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTa < 2:516426/140‑1 (MQ=255) gCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTa < 1:3308234/140‑1 (MQ=255) gCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTa < 2:5542910/140‑1 (MQ=255) gCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTa < 1:4491058/140‑1 (MQ=255) gCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTa < 2:1475093/140‑1 (MQ=255) gCCATCTGCCAGAAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTa < 2:3695365/140‑1 (MQ=255) gCCACCTGCCGGCAAGCGCACCGAGTGCAGGAAGTTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGACCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTa < 2:2456768/140‑1 (MQ=255) cATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAAt < 1:2646359/140‑1 (MQ=255) cATCTGCCAGCAAGCGCACCGAATGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAAt < 1:4038849/140‑1 (MQ=255) aTCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCGACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATg > 1:5145833/1‑140 (MQ=255) aTCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATg > 1:5025752/1‑140 (MQ=255) aTCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATAACCATTGGACGGAAGACGTTCAGCTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGGTCCCCATCACCTGACAGCAGAGCATGGTTAATg > 1:4096791/1‑140 (MQ=255) cTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGcc < 1:4077821/140‑1 (MQ=255) cTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGcc < 1:4867407/140‑1 (MQ=255) gCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTc < 1:2306182/140‑1 (MQ=255) cAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTcac < 1:4347790/140‑1 (MQ=255) cAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTcac < 1:3739834/140‑1 (MQ=255) aGCAAGCGCACCGATTGGAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTcaca < 2:3753370/140‑1 (MQ=255) aGCAAGCGCACCGATTGCAGGACATTGTCGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTCATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTcaca < 2:1600681/140‑1 (MQ=255) aGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTcaca < 1:3421443/140‑1 (MQ=255) aGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTcaca < 1:3593758/140‑1 (MQ=255) aGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTcaca < 2:1095535/140‑1 (MQ=255) aGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTcaca < 1:2968819/140‑1 (MQ=255) aGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCACATCACCTGACAGCAGAGCATGGTTAATGCCTcaca > 1:5530560/1‑140 (MQ=255) aGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACtgt < 2:3260417/140‑1 (MQ=255) aTTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTc > 2:250466/1‑140 (MQ=255) gCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGAGCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACt > 2:4012207/1‑140 (MQ=255) tgGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCAt > 2:1685391/1‑140 (MQ=255) ggATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATg > 2:3813196/1‑140 (MQ=255) ggATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATg > 1:1066432/1‑140 (MQ=255) gATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGa < 1:2122352/140‑1 (MQ=255) ccATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAg > 2:937844/1‑140 (MQ=255) cGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTcaca < 2:118920/98‑1 (MQ=255) aaGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTc > 2:4704601/1‑140 (MQ=255) aaGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTc > 1:2982646/1‑140 (MQ=255) aGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCa < 1:680157/140‑1 (MQ=255) gttcagttcaAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCAtttt < 1:5425283/140‑1 (MQ=255) gttcagttcaAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCAtttt < 1:3965869/140‑1 (MQ=255) gttcagttcaAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACGGTGTGGGGGTCACTATCCCCGGCATGATTGAGCTGCCCGGCTCaatgt > 2:4813143/1‑136 (MQ=255) tcagttcaAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGAGCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCGCACACTGTGTTGGGTCCACTTTCCTCGGCATGATGGAGCGGCCCGGCGGATTTTcc > 1:2813787/1‑140 (MQ=255) gttcaAAGTTACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGATTCACTTTCCCAGGCATGATTAAGCGGCGCGGATCAttttagggg > 1:5375042/1‑135 (MQ=255) ttACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTCCGGGATTGAGAt < 2:5508534/140‑1 (MQ=255) ttACCGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTCCGGGATTGAGAt < 1:3495322/140‑1 (MQ=255) ccGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTCCGGGATTGAGATTTc > 1:868480/1‑140 (MQ=255) ccGGAAGC‑GCC‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTCCGGGATTGAGATTTc > 2:864177/1‑140 (MQ=255) | TTCGCTCACGATTCGGTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑G‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTCCGGGATTGAGATTTC > NZ_CP025268/1690216‑1690485 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |