BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP025268	1,873,836	(T)_5→6	pseudogene (67/1283 nt)	yeaH →	YeaH/YhbH family protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	1,873,831	1	.	T	97.6%	1064.1 / 12.7	295	pseudogene (62/1283 nt)	yeaH	YeaH/YhbH family protein
Reads supporting (aligned to +/- strand): ref base . (4/3); new base T (157/127); total (164/131)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 344 total aligned reads displayed.

ACAGCGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑G‑TT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATC  >  NZ_CP025268/1873697‑1873964

aCAGCGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑G‑tt‑ttt                                                                                                                                  >  1:3413763/1‑140 (MQ=255)

aCAGCGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑G‑tt‑ttt                                                                                                                                  >  1:800556/1‑140 (MQ=255)

 cAGCGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑G‑tt‑tttt                                                                                                                                 >  2:1245459/1‑139 (MQ=255)

 cAGCGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑G‑tt‑tttt                                                                                                                                 >  2:1419938/1‑139 (MQ=255)

 cAGCGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑G‑tt‑tttt                                                                                                                                 >  2:5310147/1‑139 (MQ=255)

  aGCGAACCGTGGGCCTGAGAAGCGGCAACCCAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑G‑tt‑tttta                                                                                                                                <  2:3928055/140‑3 (MQ=255)

  aGCGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑G‑tt‑tttta                                                                                                                                <  1:1515557/140‑3 (MQ=255)

   gCGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑G‑tt‑ttttac                                                                                                                               >  1:576555/1‑137 (MQ=255)

    cGAACCGTGGGCCTGCGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTAAGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGCACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑G‑tt‑ttttaag                                                                                                                              <  1:1556434/140‑5 (MQ=255)

    cGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTTGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑G‑tt‑ttttacg                                                                                                                              >  1:2104202/1‑136 (MQ=255)

    cGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑G‑tt‑ttttacg                                                                                                                              <  1:3744662/140‑5 (MQ=255)

    cGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑G‑tt‑ttttacg                                                                                                                              <  2:2017340/140‑5 (MQ=255)

    cGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑G‑tt‑ttttacg                                                                                                                              >  1:1682638/1‑136 (MQ=255)

    cGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑G‑tt‑ttttacg                                                                                                                              <  1:958142/140‑5 (MQ=255)

    cGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGCTGGGAAATGTAGTACGGGGGGCATATGACCTTGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑G‑tt‑ttttacg                                                                                                                              <  2:3067363/140‑5 (MQ=255)

           tGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCAGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTtat                                                                                                                        >  2:5047043/1‑140 (MQ=255)

             ggCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATaa                                                                                                                      >  1:1606010/1‑140 (MQ=255)

                cTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAgc                                                                                                                   <  2:5597343/140‑1 (MQ=255)

                cTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAgc                                                                                                                   <  1:3827564/140‑1 (MQ=255)

                cTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAgc                                                                                                                   <  2:5470883/140‑1 (MQ=255)

                 tGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAgcg                                                                                                                  >  2:2792420/1‑140 (MQ=255)

                        cGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTa                                                                                                           >  2:2143596/1‑140 (MQ=255)

                        cGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTa                                                                                                           >  2:2971087/1‑140 (MQ=255)

                        cGGCAACACAAGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACATGGTTTATTGACCGGCGTCTGAACGGC‑AAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTAGAAAGCGCAAATTaa                                                                                                          >  2:3026281/1‑140 (MQ=255)

                           cAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAAGCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAAc                                                                                                        <  1:4109394/140‑1 (MQ=255)

                              cacaGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGt                                                                                                     <  1:4947926/140‑1 (MQ=255)

                               acaGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTc                                                                                                    <  1:4975566/140‑1 (MQ=255)

                                caGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCg                                                                                                   <  2:1844581/140‑1 (MQ=255)

                                  ggCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAgc                                                                                                                   >  2:1600116/1‑122 (MQ=255)

                                   gCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTGTATTGACCGGTGTGTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCACAAATTAAACAGTCGAtc                                                                                                >  2:87958/1‑140 (MQ=255)

                                      tAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTcc                                                                                             <  2:1475420/140‑1 (MQ=255)

                                        gCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGa                                                                                           <  1:1131878/140‑1 (MQ=255)

                                        gCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGa                                                                                           <  1:4679320/140‑1 (MQ=255)

                                          aTACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAgg                                                                                         <  1:1631145/140‑1 (MQ=255)

                                          aTACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAgg                                                                                         <  2:2647193/140‑1 (MQ=255)

                                          aTACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAgg                                                                                         <  1:2358349/140‑1 (MQ=255)

                                          aTACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAgg                                                                                         <  2:3954758/140‑1 (MQ=255)

                                          aTACAATTGCCAAATGCAAAACGGGGGGCACATGACCTGGTTTAATGACAGGCGTCTACACGCCAAAAACAAAAGCATCATAAATCGCCAGC‑G‑TTATTTACGCCGTTATAAAGCGCAAAGTAAACAGTCGATCTCCGAgg                                                                                         <  2:2474518/140‑1 (MQ=255)

                                           tACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGc                                                                                        <  2:3512574/140‑1 (MQ=255)

                                             cAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCTAGGCCa                                                                                      >  2:337387/1‑140 (MQ=255)

                                             cAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCa                                                                                      >  1:2946733/1‑140 (MQ=255)

                                             cAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCa                                                                                      >  2:3305214/1‑140 (MQ=255)

                                               gTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCAtt                                                                                    >  2:237668/1‑140 (MQ=255)

                                                ttGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATta                                                                                   >  2:3856026/1‑140 (MQ=255)

                                                 tGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATtaa                                                                                  <  1:3522240/140‑1 (MQ=255)

                                                  ggCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATtaat                                                                                 >  1:4167950/1‑140 (MQ=255)

                                                  ggCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATtaat                                                                                 >  2:4207520/1‑140 (MQ=255)

                                                  ggCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATtaat                                                                                 >  1:5289027/1‑140 (MQ=255)

                                                  ggCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATtaat                                                                                 >  2:803301/1‑140 (MQ=255)

                                                  ggCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATtaat                                                                                 >  1:1149651/1‑140 (MQ=255)

                                                   gCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATtaata                                                                                >  1:61926/1‑140 (MQ=255)

                                                   gCAAATGAAGTATGGGGGGCATATGACCTGGTTTATTGACTGGCGTCTGAATGGCAACAACAAAAGCAGGGTGAATGGACAGC‑GATT‑TTTCCGACGGTATAAAGCACAAGTTAAACATTCGATCTCATAGGCGATgaata                                                                                >  2:4378004/1‑140 (MQ=255)

                                                     aaaTGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAg                                                                              >  1:2022764/1‑140 (MQ=255)

                                                          tagtaCGGGGGGCATGTGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTc                                                                         >  2:2581189/1‑140 (MQ=255)

                                                          tagtaCGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTc                                                                         >  1:2293567/1‑140 (MQ=255)

                                                          tagtaCGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTc                                                                         >  2:503084/1‑140 (MQ=255)

                                                              aCGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGtg                                                                     >  1:1965518/1‑140 (MQ=255)

                                                                 gggggCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGtgact                                                                  >  1:1827755/1‑140 (MQ=255)

                                                                 gggggCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGtgact                                                                  <  1:450867/140‑1 (MQ=255)

                                                                  ggggCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAGACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGtgactg                                                                 >  2:5112391/1‑140 (MQ=255)

                                                                      cATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGt                                                             >  1:2725822/1‑140 (MQ=255)

                                                                       atatGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTc                                                            >  1:1029578/1‑140 (MQ=255)

                                                                       atatGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTc                                                            >  2:3691336/1‑140 (MQ=255)

                                                                           gACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAATAGTCGATCACCGAGGCCATCAAGAAGCGCTCAGTGACTGACGTCGACa                                                        <  2:1655372/140‑1 (MQ=255)

                                                                            aCCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGTTGACTGACGTCGACAg                                                       >  2:3450206/1‑140 (MQ=255)

                                                                            aCCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAg                                                       >  1:251797/1‑140 (MQ=255)

                                                                              cTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAgcg                                                     >  1:5217504/1‑140 (MQ=255)

                                                                                ggTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAgcggc                                                   >  1:4800989/1‑140 (MQ=255)

                                                                                 gTTTATTGACCGGCTTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAAATAAACAGTCGATCTCCGAGGCCATTAATAACCATTCGGTGACTGACGTCGACAgcggcg                                                  <  2:1160531/140‑1 (MQ=255)

                                                                                 gTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAACCAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAgcggcg                                                  <  2:642216/140‑1 (MQ=255)

                                                                                 gTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAgcggcg                                                  <  1:500663/140‑1 (MQ=255)

                                                                                 gTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAgcggcg                                                  <  1:5021767/140‑1 (MQ=255)

                                                                                 gTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAgcggcg                                                  >  1:2857135/1‑140 (MQ=255)

                                                                                 gTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAgcggcg                                                  >  1:3251228/1‑140 (MQ=255)

                                                                                 gTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAgcggcg                                                  <  1:3164384/140‑1 (MQ=255)

                                                                                  tttATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGa                                                 >  2:451756/1‑140 (MQ=255)

                                                                                  tttATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGa                                                 <  1:3636933/140‑1 (MQ=255)

                                                                                     aTTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATc                                              <  1:2792420/140‑1 (MQ=255)

                                                                                      ttGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATcc                                             <  1:1257863/140‑1 (MQ=255)

                                                                                      ttGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATcc                                             >  1:4411233/1‑140 (MQ=255)

                                                                                           cGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGTATc                                        >  1:1389376/1‑140 (MQ=255)

                                                                                           cGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGTATc                                        >  1:5458229/1‑140 (MQ=255)

                                                                                           cGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGTATc                                        >  1:4028717/1‑140 (MQ=255)

                                                                                            ggCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGTATcc                                       >  1:4377121/1‑140 (MQ=255)

                                                                                                     aCGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGTATCCATTCCCACg                              <  2:173065/140‑1 (MQ=255)

                                                                                                         cAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGTATCCATTCCCACGGAAg                          >  2:3627046/1‑140 (MQ=255)

                                                                                                          aaaaaCAAAAGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGTATCCATTCCCACGGAAGa                         <  2:748312/140‑1 (MQ=255)

                                                                                                                 aaaGCATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGc                  <  1:4325458/140‑1 (MQ=255)

                                                                                                                     cATGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAAc              <  1:3337815/140‑1 (MQ=255)

                                                                                                                      aTGGTGAATCGCCAGG‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAATAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAAcc             <  2:1615397/140‑1 (MQ=255)

                                                                                                                      aTGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAAcc             <  1:2206498/140‑1 (MQ=255)

                                                                                                                       tGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGCCGTCGACAGCGGCGAATCCGTATCAATTCGCACGGAAGAGACTAGCGAAACg            >  2:1380643/1‑140 (MQ=255)

                                                                                                                       tGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCg            <  2:253568/140‑1 (MQ=255)

                                                                                                                       tGGTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCg            >  1:507276/1‑140 (MQ=255)

                                                                                                                        ggTGAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGa           >  1:4242224/1‑140 (MQ=255)

                                                                                                                           gAATCGCCCGCTA‑TT‑TTTACGCCCTTATAAAGCGCAAATTAACCAGTCGATCTCCGCGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGt        <  2:196064/140‑1 (MQ=255)

                                                                                                                           gAATCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGt        <  2:413150/140‑1 (MQ=255)

                                                                                                                           gAATCGCCAGC‑GTTT‑TTTACGCAGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGt        <  2:949157/140‑1 (MQ=255)

                                                                                                                            aaTCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGtt       >  1:3468630/1‑140 (MQ=255)

                                                                                                                             aTCGCCAGC‑GTTT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGttt      <  1:870057/140‑1 (MQ=255)

ACAGCGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑G‑TT‑TTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATC  >  NZ_CP025268/1873697‑1873964

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`