| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 2,204,490 | (A)7→8 | pseudogene (175/3632 nt) | CXP41_RS11705 → | DUF4132 domain‑containing protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 2,204,483 | 1 | . | A | 97.0% | 968.3 / 17.6 | 263 | pseudogene (168/3632 nt) | CXP41_RS11705 | DUF4132 domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base . (3/5); new base A (115/140); total (118/145) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.34e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 280 total aligned reads displayed.
ATAACGCCCAACTGGAACTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAG‑AA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGGCGGCGCTAGCCTGTATCGCG > NZ_CP025268/2204344‑2204617 | aTAACGCCCAACTGGAACTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGag‑aag < 2:4034232/140‑1 (MQ=255) aaCTGGAACTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAG‑aa‑aaa‑aaac < 2:2858984/140‑3 (MQ=255) aCTGGAACTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAG‑aa‑aaa‑aaaca < 2:712332/140‑4 (MQ=255) tGGAACTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAAGTGCTACAAAAAGCTGAG‑AAG‑aa‑aaa‑aaacatt < 1:5545683/140‑6 (MQ=255) gAACTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGt > 2:2584713/1‑140 (MQ=255) gAACTGAAATATAAAAAACGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGt > 2:2533611/1‑140 (MQ=255) aCTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCACATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAAA‑AA‑AAA‑AA‑CATTGTCt > 1:3107328/1‑140 (MQ=255) aaaTATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCg > 1:967465/1‑140 (MQ=255) taAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATg > 1:4244584/1‑140 (MQ=255) aaaCGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCa > 2:4950516/1‑140 (MQ=255) aaCGCCGTTCCGTCATCGTCGCTCGCCGGGCGATCCAGAGTCAGTTATCACTGGAAGTCTCCTCCAGACATGGGGTGCTAAATTGCGAGATAAATGTGAG‑AAC‑AA‑AAA‑AAGCATTGTCTGGCGTTATGAGAATTGTTCAc < 2:35758/140‑1 (MQ=255) aaCGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCAc < 2:3508098/140‑1 (MQ=255) cgcTCAGTCATCGTCGCTGGCGGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATGGTCTGGCGTTATGAGAAATTGTCACTTGAg > 2:842666/1‑140 (MQ=255) cgcTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAg < 2:1737562/140‑1 (MQ=255) cgcTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAg > 1:4433729/1‑140 (MQ=255) gcTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGt > 2:3436194/1‑140 (MQ=255) gcTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGt > 2:2251284/1‑140 (MQ=255) tCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTgg < 1:5063693/140‑1 (MQ=255) aGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCa > 2:4740927/1‑140 (MQ=255) cATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTc < 1:1002750/140‑1 (MQ=255) cATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTc < 2:1949980/140‑1 (MQ=255) cATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTc < 1:3262743/140‑1 (MQ=255) cATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCAGCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATGGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTc < 2:5453798/140‑1 (MQ=255) gtcgCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGcc > 1:2518685/1‑140 (MQ=255) tGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCCTCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCAc > 1:859556/1‑140 (MQ=255) tGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCAc > 2:5339893/1‑140 (MQ=255) tGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCAc > 1:2911652/1‑140 (MQ=255) gCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGc < 1:3383194/140‑1 (MQ=255) gCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGc < 2:4658504/140‑1 (MQ=255) gCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGc > 2:1365723/1‑140 (MQ=255) gCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGc < 1:2018027/140‑1 (MQ=255) ccGGGCGAACTAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCa < 1:2328668/140‑1 (MQ=255) ccGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCa < 1:2250067/140‑1 (MQ=255) ggCGAACCAGTGTGCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGGTATGAGAATTTTTCACTGAATTGGGA‑TCCGCCCTCAAGAAggac > 2:581200/1‑138 (MQ=255) aaCCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAG‑CAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATc < 2:5154973/140‑1 (MQ=255) ccAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCaa > 1:22768/1‑140 (MQ=255) tgtCCGTTATCACTGGAAGTCTCATCCAGACATTGGGGGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTg > 1:1901158/1‑140 (MQ=255) gtCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGa < 1:1972460/140‑1 (MQ=255) cGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCg > 2:1150755/1‑140 (MQ=255) gTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCgg > 2:5501249/1‑140 (MQ=255) gTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGATACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATGGTCTGGCGTTAGGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCgg > 2:5375150/1‑140 (MQ=255) cACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAac > 1:3246646/1‑140 (MQ=255) cACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAac > 2:3018592/1‑140 (MQ=255) cACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAac > 2:5046577/1‑140 (MQ=255) cTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAacac > 2:4708554/1‑140 (MQ=255) cTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAacac > 1:1623694/1‑140 (MQ=255) cTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAacac > 1:1218965/1‑140 (MQ=255) tGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAAcaca < 1:4911760/140‑1 (MQ=255) tGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAAcaca < 1:4276585/140‑1 (MQ=255) ggAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAT‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACCGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACaa < 2:2086070/140‑1 (MQ=255) ggAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCATCTTGATCGGCGAACACaa > 2:3988237/1‑140 (MQ=255) gAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACaaa > 1:2488105/1‑140 (MQ=255) aGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAAcc < 2:3093923/140‑1 (MQ=255) tctcATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCTGGCCCTCAACTTGATCGGCGAACACAAACCCt > 2:5278664/1‑140 (MQ=255) tcATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCa > 2:1687704/1‑140 (MQ=255) aTCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAAt > 1:1113854/1‑140 (MQ=255) tCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATc < 1:2697803/140‑1 (MQ=255) tCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGGGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATc < 2:4489046/140‑1 (MQ=255) ccAGACATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCATTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATcc < 1:4084993/140‑1 (MQ=255) aCATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATcccggc > 1:4060006/1‑140 (MQ=255) cATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCACTcccggcc < 2:1026059/140‑1 (MQ=255) cATTCGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATcccggcc < 2:2713091/140‑1 (MQ=255) ttGGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATcccggcccg < 1:2392055/140‑1 (MQ=255) tGGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATcccggcccgg > 1:2764503/1‑140 (MQ=255) tGGGTGATGAATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATcccggcccgg > 2:3847456/1‑140 (MQ=255) gatgaATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAAt > 2:1109135/1‑140 (MQ=255) atgaATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATg > 1:1849394/1‑140 (MQ=255) tgaTTTGCTACAAAAAGCTTAT‑ATG‑AA‑AAATAC‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCCGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGTCCCGGACAAttg < 2:2498615/140‑3 (MQ=255) tgaATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATgg < 1:1683817/140‑1 (MQ=255) tgaATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATgg < 1:3311215/140‑1 (MQ=255) tgaATTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGACGTGATCAGAATTTTTCACTGGAGAGGCAGTCCGCCATCACGCAGTCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATgg < 1:3348059/140‑1 (MQ=255) aTTGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATggcgg < 1:577644/140‑1 (MQ=255) tGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg > 1:4166649/1‑140 (MQ=255) tGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 2:1806327/140‑1 (MQ=255) tGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:3943829/140‑1 (MQ=255) tGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:3846943/140‑1 (MQ=255) tGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:3608400/140‑1 (MQ=255) tGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:3472592/140‑1 (MQ=255) tGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 2:685675/140‑1 (MQ=255) tGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:1652964/140‑1 (MQ=255) tGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:1411075/140‑1 (MQ=255) tGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 2:1555051/140‑1 (MQ=255) tGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 2:4067791/140‑1 (MQ=255) tGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:4566755/140‑1 (MQ=255) tGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:476173/140‑1 (MQ=255) tGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 2:1083298/140‑1 (MQ=255) tGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:61119/140‑1 (MQ=255) tGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 2:3751604/140‑1 (MQ=255) tGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:4975635/140‑1 (MQ=255) tGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:5197726/140‑1 (MQ=255) tGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 2:322958/140‑1 (MQ=255) tGCTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGACCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:533548/140‑1 (MQ=255) tGCTACAAAAAGCTGAG‑AAG‑AACAAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 2:4400669/140‑1 (MQ=255) tGCTACAAAAAGCGGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCCCTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAACCCCTCACTCCCGGCCCGGACAATGgcggcg < 2:1892008/140‑1 (MQ=255) cTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGGCGgcgcc > 2:892211/1‑139 (MQ=255) cTACAAAAAGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCAGGACAATGGCGGCGCt > 1:3118863/1‑140 (MQ=255) aaaaGCTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATcccggcccg < 2:3918158/120‑1 (MQ=255) cTGAG‑AAGAAA‑AAA‑AA‑CATTGTCTGGCGTTAAGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGGCGGCGCTAGCCTGTATc > 2:4349932/1‑140 (MQ=255) ag‑aagaAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGGCGGCGCTAGCCTGTATcgcg > 1:369714/1‑140 (MQ=255) ag‑aagaAA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGGCGGCGCTAGCCTGTATcgcg > 2:1190976/1‑140 (MQ=255) | ATAACGCCCAACTGGAACTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAG‑AAG‑AA‑AAA‑AA‑CATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGGCGGCGCTAGCCTGTATCGCG > NZ_CP025268/2204344‑2204617 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |