| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 3,743,290 | +C | intergenic (‑66/‑116) | yiaJ ← / → galK | IclR family transcriptional regulator YiaJ/galactokinase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 3,743,289 | 1 | . | C | 96.0% | 391.2 / 8.7 | 125 | intergenic (‑65/‑117) | yiaJ/galK | IclR family transcriptional regulator YiaJ/galactokinase |
| Reads supporting (aligned to +/- strand): ref base . (1/4); new base C (65/55); total (66/59) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.88e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 129 total aligned reads displayed.
TCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑A‑CAATTGATTTTTATGTCTTTTGAAATTCATCAATCCTGTTGACAATTAATCATCGGCATAGTATATCGGCATAGTATAATACGACAAGGTGAGGAACTAAACCCAGGAGGCAGATCATGAGTCTGAAAGAA > NZ_CP025268/3743152‑3743420 | tctGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGAGAGATAATTTATA‑A‑cc > 1:5296452/1‑139 (MQ=255)tctGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑A‑cc > 1:2593072/1‑139 (MQ=255) ggCTTCCTGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑A‑ccaat < 2:5594513/140‑5 (MQ=255) ggCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGGTCTCTTTTTTTCCCATCCCTTCTTTCCCCCTTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCCCGATCTCGACAGATAATTTATC‑A‑ccaat > 2:2951425/1‑136 (MQ=255) ccGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGAtt > 2:1073472/1‑140 (MQ=255) cGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGAttt > 2:5145946/1‑140 (MQ=255) tGGACGCTCTTTTTCCTGCTCCATCTCGTTCTATTTTTTCCCCATCACCTCTTTCCCCATTCTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGCTCTCGACTGATAATTTCTA‑ACCAATTGATTTTTAt < 2:1170335/140‑1 (MQ=255) ggACGCTCTTTTTCCTTCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATg > 1:4898651/1‑140 (MQ=255) ttttCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGaa < 1:5604670/140‑1 (MQ=255) ttttCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGaa < 1:4281791/140‑1 (MQ=255) ttgtCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGaa < 1:28386/137‑1 (MQ=255) gcgcCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATtcatc > 2:5058710/1‑140 (MQ=255) gcgcCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATtcatc > 1:2797776/1‑140 (MQ=255) cgcCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATtcatca < 1:1920328/140‑1 (MQ=255) cgcCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATtcatca > 2:3456817/1‑140 (MQ=255) cgcCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATtcatca < 1:4064278/140‑1 (MQ=255) tctcGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCag > 1:3025118‑M1/1‑138 (MQ=255) ttCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgc > 1:4571486‑M1/1‑133 (MQ=255) ttCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgc > 2:472393‑M1/1‑133 (MQ=255) tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCCATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 1:5026918‑M1/140‑9 (MQ=255) tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 1:4152177‑M1/140‑9 (MQ=255) tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 1:4558034‑M1/140‑9 (MQ=255) tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 2:2571572‑M1/140‑9 (MQ=255) tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 1:5237483‑M1/140‑9 (MQ=255) tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 1:1996917‑M1/140‑9 (MQ=255) tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 2:3060853‑M1/140‑9 (MQ=255) tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 2:3061127‑M1/140‑9 (MQ=255) tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 2:1806417‑M1/140‑9 (MQ=255) tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 2:4787470‑M1/140‑9 (MQ=255) tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 2:4897248‑M1/140‑9 (MQ=255) tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 2:5315727‑M1/140‑9 (MQ=255) tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAGA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATAAATCagattgcc < 1:1780237‑M1/140‑9 (MQ=255) tctcTTTTTTTCACATCGCTTCTTGCCCCATTTTGTCGCGTCCTGCTGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAAGTTATAGC‑CAATTGATTTTTATGTCTTTTGAAATTAATCAATCagattgcc < 2:4756395‑M1/140‑9 (MQ=255) tttttttCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgt > 1:45422‑M1/1‑128 (MQ=255) tttttttCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgt > 2:2639960‑M1/1‑128 (MQ=255) tttttttCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgt < 1:5145946‑M1/140‑13 (MQ=255) tttCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaa < 1:5156644‑M1/140‑17 (MQ=255) tgccatCACTTCTTTCCCCATTTTGTCGCGTCCTGATGATAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattcccttgttaaaaa < 2:5521003‑M1/138‑19 (MQ=255) cATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtg < 2:2797776‑M1/140‑22 (MQ=255) aTCACTTCTTTCCCCATTTTGTCGCGTCCTGCTGGTAGCGCCAAGTGTGCCGTAGTTCACGCGCTCGACAGATAATTGATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCGTCAATCaaattgccttgttaaaaagtga > 2:446964‑M1/1‑118 (MQ=255) aTCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtga > 1:735724‑M1/1‑118 (MQ=255) aTCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtga > 1:1461514‑M1/1‑118 (MQ=255) aTCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtga > 2:5268692‑M1/1‑118 (MQ=255) tCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgct < 1:3654368‑M1/140‑24 (MQ=255) tCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgat < 2:2593072‑M1/140‑24 (MQ=255) tCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgat < 1:478142‑M1/140‑24 (MQ=255) ttcttTCCCCATGTTGACGCGTCCTCATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATATC‑CATTTGATTTTGGTGTCTGTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgat < 2:4332193‑M1/140‑28 (MQ=255) tCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAATTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatt > 1:212872‑M1/1‑108 (MQ=255) tCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatt > 2:4020126‑M1/1‑108 (MQ=255) tCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatt > 2:783852‑M1/1‑108 (MQ=255) tCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatt > 1:2563708‑M1/1‑108 (MQ=255) tCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTCTGCCGTAGTTCACGATCGCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaattgatcgatatatt > 2:4846257‑M1/1‑108 (MQ=255) tttGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatc < 2:3263497‑M1/140‑40 (MQ=255) tCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgc > 1:3915693‑M1/1‑92 (MQ=255) tCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgc > 1:3180714‑M1/1‑92 (MQ=255) tCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgc > 1:3180505‑M1/1‑92 (MQ=255) tCCTGATGGTAGCGCAAAGGGTGCCGTAGTTCACGATCTCGACAGATAATTTATACC‑CAATTGATTTTTATGTCTTTTGAAATTCATCAATCagatttccttgttaaaaagtgatcgatatatttgaaatcaagtttcgc > 1:3218374‑M1/1‑92 (MQ=255) ccTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGCTCTCGACAGTTAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAATTTCGTCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcacgtttcgca < 2:3355400‑M1/140‑50 (MQ=255) ggTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattga < 1:5010842‑M1/140‑56 (MQ=255) aGCGCAAAGTGTTCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaat > 2:5520827‑M1/1‑82 (MQ=255) aGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaat > 1:2180657‑M1/1‑82 (MQ=255) cAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaatttta < 1:1073472‑M1/140‑63 (MQ=255) aaGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTGTTAGGTCTTTTGAAATGCATCAATCagattgccttgtaaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaag > 2:4329586‑M1/1‑76 (MQ=255) aGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagc > 2:2948445‑M1/1‑75 (MQ=255) aGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagc > 2:2948524‑M1/1‑75 (MQ=255) ggtgcCGTAGTTCACTATCTCGTCAGGTAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagagtgccttgtgaaaaattgaactatatatttgaaatcaagtttcgtatatggaaattttaagtca > 2:1738135‑M1/2‑73 (MQ=255) gCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaa > 2:2084349‑M1/1‑70 (MQ=255) gCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaa > 2:1052734‑M1/1‑70 (MQ=255) ccGTAGTTCACGCTCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaa > 2:5522364‑M1/1‑69 (MQ=255) aGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcg > 2:2728703‑M1/1‑65 (MQ=255) aGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcg > 2:5349125‑M1/1‑65 (MQ=255) aGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttggtaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcg > 2:2728702‑M1/1‑65 (MQ=255) ttCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatttatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgat > 2:4477860‑M1/1‑63 (MQ=255) ttCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgat > 1:3455420‑M1/1‑63 (MQ=255) ttCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgat > 1:3596263‑M1/1‑63 (MQ=255) ttCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgat > 2:2190448‑M1/1‑63 (MQ=255) ttCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgat > 1:3923522‑M1/1‑63 (MQ=255) cACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatca < 1:5268692‑M1/140‑80 (MQ=255) cACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatca > 1:722598‑M1/1‑61 (MQ=255) cGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaa > 2:67850‑M1/1‑59 (MQ=255) cGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaa > 1:585970‑M1/1‑59 (MQ=255) gATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaa > 1:4191487‑M1/1‑58 (MQ=255) gATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaa > 1:2304648‑M1/1‑58 (MQ=255) aTCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaa < 1:2189295‑M1/140‑84 (MQ=255) cGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaaca > 2:2671481‑M1/1‑53 (MQ=255) cGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaaca > 2:5334767‑M1/1‑53 (MQ=255) cGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAACTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaaca > 2:5104479‑M1/1‑53 (MQ=255) aCAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaag < 1:1321159‑M1/140‑90 (MQ=255) aCAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaag < 1:2992556‑M1/140‑90 (MQ=255) aCAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaag < 1:4751268‑M1/140‑90 (MQ=255) aCAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaag < 1:1448632‑M1/140‑90 (MQ=255) cAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatctgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaagg < 2:1613586‑M1/140‑91 (MQ=255) aagATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatgttgaaattttaagccaaaaaagcgatcaaaaaaacaagg < 2:1614675‑M1/139‑91 (MQ=255) aGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaagga < 2:4288280‑M1/140‑92 (MQ=255) aGATAATGTATA‑ACCAACTTATCTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtgtcgcatattgaaattttaagccaaaaacgcgatcaaaaaaacaagga < 2:4383875‑M1/140‑92 (MQ=255) aaTTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaaggaagcc < 2:3488478‑M1/140‑96 (MQ=255) aaTTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaaggaagcc < 1:2639960‑M1/140‑96 (MQ=255) aTTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaaggaagcct > 1:3623412‑M1/1‑44 (MQ=255) aTTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaaggaagcct < 2:2674965‑M1/140‑97 (MQ=255) aTTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaaggaagcct < 1:3849629‑M1/140‑97 (MQ=255) | TCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑A‑CAATTGATTTTTATGTCTTTTGAAATTCATCAATCCTGTTGACAATTAATCATCGGCATAGTATATCGGCATAGTATAATACGACAAGGTGAGGAACTAAACCCAGGAGGCAGATCATGAGTCTGAAAGAA > NZ_CP025268/3743152‑3743420 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |