| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 3,864,439 | +C | pseudogene (1083/1613 nt) | CXP41_RS20140 ← | PTS sugar transporter subunit IIB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 3,864,437 | 1 | . | C | 98.5% | 1097.1 / 6.7 | 332 | pseudogene (1085/1613 nt) | CXP41_RS20140 | PTS sugar transporter subunit IIB |
| Reads supporting (aligned to +/- strand): ref base . (3/2); new base C (178/149); total (181/151) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 355 total aligned reads displayed.
GCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑C‑CATGTT‑‑‑CACCA‑‑‑CACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAG > NZ_CP025268/3864298‑3864564 | gCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCg > 1:3772343/1‑140 (MQ=255) cAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCG‑c > 1:743388/1‑140 (MQ=255) cAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCG‑c > 1:4440792/1‑140 (MQ=255) aGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCG‑c‑c > 2:1493442/1‑140 (MQ=255) aGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACATCCG‑c‑c > 2:2755099/1‑140 (MQ=255) aGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGCAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCACTCAGACCTCCG‑c‑c > 2:2568857/1‑140 (MQ=255) aaTCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCAAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCG‑c‑cca < 1:2447631/140‑3 (MQ=255) tCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCG‑c‑ccatg < 1:5326286/140‑5 (MQ=255) aGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGtt < 2:4060879/140‑1 (MQ=255) gtgtGCGGACAACCACGCAGTACAGCAGGGTAAAGCACAACCCACTGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGACCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTg < 2:4435748‑M1/140‑2 (MQ=255) gtgtGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCCTATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTg < 2:4529652‑M1/140‑2 (MQ=255) gtgtGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATAACCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGttt > 1:2830501/1‑139 (MQ=255) gtgCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcc < 2:459140‑M1/140‑4 (MQ=255) gtgCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcc < 1:1873266‑M1/140‑4 (MQ=255) gtgCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcc < 1:4601792‑M1/140‑4 (MQ=255) tgCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgccc > 2:817985‑M1/1‑136 (MQ=255) cgtaaaaccaCGAAGTACAGCAGTGTAACGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTACAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccac < 2:3510291‑M1/137‑7 (MQ=255) cGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccac < 2:4125218‑M1/140‑7 (MQ=255) aCCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacacc > 1:4027977‑M1/1‑128 (MQ=255) aCCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacacc > 1:3878328‑M1/1‑128 (MQ=255) aCGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaacacaccaaa < 1:414778‑M1/140‑16 (MQ=255) cGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaag < 1:1057651‑M1/140‑17 (MQ=255) cGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaag > 1:2943996‑M1/1‑124 (MQ=255) cGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaag < 2:1967149‑M1/140‑17 (MQ=255) cagcagGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagataca < 2:924412‑M1/140‑24 (MQ=255) cagcagGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagataca < 1:1292690‑M1/140‑24 (MQ=255) agcagGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacat > 2:5216122‑M1/1‑116 (MQ=255) ggTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacgg > 1:5060225‑M1/1‑111 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacacccaagagatacattacggtc > 2:3984564‑M1/1‑109 (MQ=255) aGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgac > 1:3338521‑M1/1‑106 (MQ=255) aGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgac > 1:3947321‑M1/1‑106 (MQ=255) acaACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacatt < 1:2616905‑M1/140‑38 (MQ=255) aaCCCAATGGTGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccactacagcaaagagatacattacggtcgacattga > 2:2017415‑M1/1‑101 (MQ=255) aaCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattga > 2:1156533‑M1/1‑101 (MQ=255) aaCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattga > 2:475063‑M1/1‑101 (MQ=255) aaCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattga > 1:5144200‑M1/1‑101 (MQ=255) aaCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattga > 1:1819152‑M1/1‑101 (MQ=255) aaCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGACCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCCCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattga > 2:5604447‑M1/1‑101 (MQ=255) aCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgag > 1:5220180‑M1/1‑100 (MQ=255) aCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgag < 1:2311483‑M1/140‑41 (MQ=255) aCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CAGGTTgcccaccacaccaaagagatacattacggtcgacattgag < 2:2147805‑M1/140‑41 (MQ=255) cccAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgagg > 1:2031898‑M1/1‑99 (MQ=255) cccAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgagg > 1:3317098‑M1/1‑99 (MQ=255) cccAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgagg > 2:1054570‑M1/1‑99 (MQ=255) ccAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGCTgcccaccacaccaaagagatacattacggtcgacattgaggc < 2:5119109‑M1/140‑43 (MQ=255) aTGGCGATTTGGGTCAGCAACCTACCCGCGTGGATGCTGAACATCGGGCTCCAGTTGTGCGGTACAACCTAGTCAATCACACCTCCGCC‑CCTGTTGCCCACAA‑‑‑CACCAACGAGATACCTTACGGTCGACATTGAGgccgc < 2:4818692/140‑1 (MQ=255) tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgccca < 2:3147668‑M1/99‑6 (MQ=255) tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgccca > 1:3147668‑M1/1‑94 (MQ=255) tGGCGATTTGGGTCAGCATCATATCCGCGTGGCTGCTGGACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacagtgaggccgcc > 1:4520614‑M1/1‑94 (MQ=255) cgctttGGGTCAGCGTCATACACGCGTGGTTGCTGAGCATCGGGATCCAGTTTTGCGGTAAAACCTGGTCAATCAGACCGCCGCC‑CATGCTGCCCACCA‑‑‑CACCAAAGAGATACACTACGGTCGACATTGAGGCCGCCAGc < 2:2512256/137‑1 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatatattacggtcgacattgaggccgccagc < 2:4292121‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 1:3511839‑M1/140‑50 (MQ=255) gATTTGGGTCAGCATCATATCCGCGTGGGTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTAAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagca < 1:5370327‑M1/140‑51 (MQ=255) aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcac > 2:1147659‑M1/1‑89 (MQ=255) aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcac > 1:5300467‑M1/1‑89 (MQ=255) aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcac > 1:388738‑M1/1‑89 (MQ=255) aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcac > 1:4129476‑M1/1‑89 (MQ=255) ttGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacgg > 1:2160642‑M1/1‑87 (MQ=255) tGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggc < 1:4384123‑M1/140‑55 (MQ=255) cAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgta < 1:1559946‑M1/140‑60 (MQ=255) aGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtac > 1:3043325‑M1/1‑80 (MQ=255) aGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtac > 1:436081‑M1/1‑80 (MQ=255) tcatATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgca < 2:648754‑M1/140‑65 (MQ=255) tatCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaac > 1:1738860‑M1/1‑73 (MQ=255) tatCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaac > 1:2975123‑M1/1‑73 (MQ=255) tatCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaaa > 1:1112794‑M1/1‑73 (MQ=255) tatCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgggtaccgcaaac > 1:4228578‑M1/1‑73 (MQ=255) cgcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagca < 2:3962607‑M1/140‑72 (MQ=255) cgcgTGGTTGCCGAACATCGGGATCCAGTTTTGCGCTAAAACCTAGTCAATCAGCCCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagca < 2:3077199‑M1/140‑72 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaa > 1:550707‑M1/1‑68 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaa > 1:2529461‑M1/1‑68 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgcgtaccgcaaacagcaa > 1:4846732‑M1/1‑68 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCG‑CTCATGTTgcccaccacaccaaagagatacattacggtcgacagggtggccgccagcacggcgtttaccgcagaaagcaa > 2:1287719‑M1/1‑68 (MQ=255) cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaac > 1:932232‑M1/1‑67 (MQ=255) tGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacgg > 1:2774295‑M1/1‑65 (MQ=255) gTTGCTGAACATCGTGTTCCAGTTTTGTGGTAAAACCTAGTTAATATGCCCTCCGCC‑CGTGTT‑‑‑CGCCAACCCACCAGCGAGATACATCACGGTGGACATTGAGGCCGCCAACACGGCGGATACCGCAAACAGCAACGGTg > 2:2698296/1‑140 (MQ=255) gTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtg > 2:3019845‑M1/1‑63 (MQ=255) gTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacagtg > 2:1323143‑M1/1‑63 (MQ=255) aaCATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaa < 1:137535‑M1/140‑85 (MQ=255) aaCATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaa > 1:158935‑M1/1‑56 (MQ=255) aCATCGGGATCCAGTTTTTCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaac < 2:23478‑M1/140‑86 (MQ=255) tCGGGATCCTGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagg < 1:3538818‑M1/140‑89 (MQ=255) tCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagg < 1:796379‑M1/140‑89 (MQ=255) tCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagg > 1:2076687‑M1/1‑52 (MQ=255) cGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagga < 1:4288641‑M1/140‑90 (MQ=255) ggATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaag > 1:587863‑M1/1‑49 (MQ=255) aGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaat > 2:1707613‑M1/1‑43 (MQ=255) tgaggtaaCACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacgttacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccag < 2:3324393‑M1/137‑103 (MQ=255) tGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccag < 1:1922251‑M1/140‑103 (MQ=255) tGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccag > 1:99865‑M1/1‑38 (MQ=255) tGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccag < 1:470827‑M1/140‑103 (MQ=255) cGGTAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcg > 2:2442499‑M1/1‑36 (MQ=255) tAAAACCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggtt < 1:2341248‑M1/140‑108 (MQ=255) aacctagtcAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcgg < 1:5019039‑M1/136‑111 (MQ=255) aaCCTAGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcgg < 2:2951673‑M1/140‑111 (MQ=255) cctagTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggttgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggta < 2:3706522‑M1/138‑113 (MQ=255) aGTCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaatt < 2:353170‑M1/140‑116 (MQ=255) tCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcc > 2:4666797‑M1/1‑23 (MQ=255) tCAATCAGACCTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcc > 2:5434464‑M1/1‑23 (MQ=255) ccTCCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccagcat < 2:3434781‑M1/140‑127 (MQ=255) | GCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑C‑CATGTT‑‑‑CACCA‑‑‑CACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAG > NZ_CP025268/3864298‑3864564 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |