| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 4,542,898 | (A)6→7 | pseudogene (27/602 nt) | fimB → | type 1 fimbria switch DNA invertase FimB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 4,542,892 | 1 | . | A | 95.7% | 686.0 / 18.0 | 184 | pseudogene (21/602 nt) | fimB | type 1 fimbria switch DNA invertase FimB |
| Reads supporting (aligned to +/- strand): ref base . (5/3); new base A (107/69); total (112/72) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 204 total aligned reads displayed.
CCACTTACGTTAGTTATTAAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAAC‑AA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCGGGCGAGTGAAATTTGT > NZ_CP025268/4542754‑4543026 | cTTACGTTAGTTATTAAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAAC‑aa‑aa > 2:2812956/1‑140 (MQ=255) gttagttaTTAAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAAC‑aa‑aa‑aaagg < 1:3773800/140‑4 (MQ=255) gttagttaTTAAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAAC‑aa‑aa‑aaagg < 2:2042095/140‑4 (MQ=255) ttatttatTAAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGTATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAAC‑aa‑aa‑aaagga < 2:494500/140‑5 (MQ=255) ttagttaTTAAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAAC‑aa‑aa‑aaagga < 1:5255420/140‑5 (MQ=255) tagttaTTAAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAAC‑aa‑aa‑aaaggaa < 1:1338840/140‑6 (MQ=255) tagttaTTAAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAAC‑aa‑aa‑aaaggaa < 2:3648179/140‑6 (MQ=255) agttaTTAAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAAc > 2:1633804/1‑140 (MQ=255) agttaTTAAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAAc > 2:4061868/1‑140 (MQ=255) ttattaAGCAAACGTTCGCTTTTATAAGCATAATTAGGTTAAAATTGTTGGATTATTGCTAACCCAGCACAGCTACTTCGCGTCTGTAATTATAATGTAAAAACGATGAAGAATAAGGCTGATAAC‑AA‑AA‑AAGGaaactt > 2:2660632/1‑136 (MQ=255) ttaAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTGATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCt < 2:5071201/140‑1 (MQ=255) ttaAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCt < 1:1014098/140‑1 (MQ=255) ttaAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCt < 1:2764872/140‑1 (MQ=255) taAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTg < 1:1985847/140‑1 (MQ=255) aaaCGTTCGCTGTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAAC‑AA‑AATAAGGAACTTCCTGACCCa > 2:3989268/1‑140 (MQ=255) cGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGaa > 1:4406244/1‑140 (MQ=255) ataAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAAt < 2:275535/140‑1 (MQ=255) ataAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAAt > 1:1267386/1‑140 (MQ=255) ataAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAAt < 2:5136033/140‑1 (MQ=255) aaaCATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCa < 1:3945210/140‑1 (MQ=255) aaaCATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCa < 2:37656/140‑1 (MQ=255) aCATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACt > 2:3483316/1‑140 (MQ=255) aTAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTcc > 1:325630/1‑140 (MQ=255) aTAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTcc > 1:674578/1‑140 (MQ=255) tAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCt < 2:1126525/140‑1 (MQ=255) tCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTaa > 2:5188269/1‑140 (MQ=255) cAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTaaa < 1:3059187/140‑1 (MQ=255) cAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCCTaaa < 1:4597662/140‑1 (MQ=255) aGGATAAAAATGTTTGATTATTGATAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAag < 1:5185835/140‑1 (MQ=255) gATAAAACTGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAagca > 2:2338302/1‑140 (MQ=255) gATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTCATTATAAGGGAAGAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACGCATAGTGAAAGCGAATCACTCCTTAAagca > 1:2703399/1‑140 (MQ=255) tAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAagcagc < 1:1797446/140‑1 (MQ=255) tAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAagcagc < 1:3665015/140‑1 (MQ=255) gTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATAcc < 1:816148/140‑1 (MQ=255) gTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATAcc < 2:4466377/140‑1 (MQ=255) ttGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCg > 1:4212016/1‑140 (MQ=255) ttGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCg > 2:3343859/1‑140 (MQ=255) ttGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCg > 1:1949648/1‑140 (MQ=255) ttGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCg > 2:3473601/1‑140 (MQ=255) ttGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCg > 1:2249891/1‑140 (MQ=255) gATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGTAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGc < 1:4652175/140‑1 (MQ=255) gATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGc < 1:1524976/140‑1 (MQ=255) tttcTAACCCAGCACAGTTATTGCGCGTCTGTTATTTTAAGGGAAAAACGATGAAGAATGAGGCTGATTAT‑AATAT‑AAGGAACTTCTTGACCTATGTTGAAATCCATTCACTCCTTAATTCAGTAAATACCGGGCCTctt > 2:836837/4‑138 (MQ=255) ttGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGAGGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCAt > 1:3371114/1‑140 (MQ=255) gCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATgc > 2:2224099/1‑140 (MQ=255) cTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATgca < 2:1949648/140‑1 (MQ=255) tAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATgcag < 1:3995515/140‑1 (MQ=255) tAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATgcag < 2:5507212/140‑1 (MQ=255) aaCCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGAGCCTCATgcagc > 2:565370/1‑140 (MQ=255) aCCCAGCCCCGCTAGTGCGCGTCTGTCATTATAAGGGAAACACGATGAAGCATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTAAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATgcagca < 2:4394907/140‑1 (MQ=255) aCCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATgcagca > 1:1119991/1‑140 (MQ=255) aCCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATgcagca < 2:3192229/140‑1 (MQ=255) aCCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATgcagca < 1:2566619/140‑1 (MQ=255) aCCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATgcagca < 2:1801791/140‑1 (MQ=255) aCCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATgcagca < 1:410765/140‑1 (MQ=255) aCCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATgcagca < 2:1204920/140‑1 (MQ=255) gCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGAGAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATTCAGCACGTaa > 2:2953877/1‑140 (MQ=255) cacaGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCATCAAATACCGAGCCTCATGCAGCACGTaga > 2:4671824/1‑138 (MQ=255) cTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTg > 1:359247/1‑140 (MQ=255) cTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTg > 1:3140620/1‑140 (MQ=255) cTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTg > 2:2493838/1‑140 (MQ=255) cTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTg > 2:878768/1‑140 (MQ=255) tAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGt > 2:1015257/1‑140 (MQ=255) tAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGt > 2:610111/1‑140 (MQ=255) aGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTc < 2:4520159/140‑1 (MQ=255) gTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCt > 2:1546711/1‑140 (MQ=255) cgTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGActt > 1:4855659/1‑140 (MQ=255) cgTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGActt > 2:3953883/1‑140 (MQ=255) cgTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGActt > 1:4700582/1‑140 (MQ=255) cgTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGActt > 1:2419710/1‑140 (MQ=255) cgTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTACTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGActt > 2:359228/1‑140 (MQ=255) tCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGActttg > 1:5441876/1‑140 (MQ=255) cTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGActttgc > 1:4578377/1‑140 (MQ=255) tGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGActttgct < 1:2462583/140‑1 (MQ=255) tGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGActttgct < 1:4486986/140‑1 (MQ=255) gTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGActttgctt < 2:3048276/140‑1 (MQ=255) gTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGActttgctt < 1:1626831/140‑1 (MQ=255) ataAGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGtttt > 1:2135423/1‑140 (MQ=255) aaGGGAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTAt > 2:972454/1‑140 (MQ=255) ggAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCa < 2:430190/140‑1 (MQ=255) ggAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCa < 2:4412901/140‑1 (MQ=255) ggAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCa > 1:4412395/1‑140 (MQ=255) ggAAAAACGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAAGCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCa < 2:4497224/140‑1 (MQ=255) aaaaCGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATgg > 2:3421746/1‑140 (MQ=255) aaaCGATGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGt > 1:3424154/1‑140 (MQ=255) tGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACTTAATTATTGTCTGACTTCGCTTTGTTTTATTCATGGTTTCCgg > 1:5092240/1‑140 (MQ=255) tGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCgg < 2:2642144/140‑1 (MQ=255) tGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCgg > 2:1139152/1‑140 (MQ=255) tGAAGAATAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCgg > 1:51290/1‑140 (MQ=255) gaagaaTAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCggg < 1:1162629/140‑1 (MQ=255) gaagaaTAAGGCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCggg < 1:2339107/140‑1 (MQ=255) ggCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCGGGCGAGTGaaa > 1:5601158/1‑140 (MQ=255) ggCTGATAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCGGGCGAGTGaaa > 1:3326339/1‑140 (MQ=255) aTAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCGGGCGAGTGAAATTTGt > 1:4399416/1‑140 (MQ=255) aTAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCGGGCGAGTGAAATTTGt > 1:2982120/1‑140 (MQ=255) aTAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCGGGCGAGTGAAATTTGt < 2:73719/140‑1 (MQ=255) aTAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCGGGCGAGTGAAATTTGt < 1:99867/140‑1 (MQ=255) aTAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCGGGCGAGTGAAATTTGt > 1:2040740/1‑140 (MQ=255) aTAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCGGGCGAGTGAAATTTGt > 2:953175/1‑140 (MQ=255) aTAACAAA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCGGGCGAGTGAAATTTGt > 2:4181778/1‑140 (MQ=255) | CCACTTACGTTAGTTATTAAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAAC‑AA‑AA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCGGGCGAGTGAAATTTGT > NZ_CP025268/4542754‑4543026 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |