| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NZ_CP025268 | 262,011 | Δ34,307 bp | ykfI–intF | 46 genes ykfI, yafW, ykfH, ykfG, yafX, ykfF, CXP41_RS01315, CXP41_RS01320, CXP41_RS01325, CXP41_RS01330, yafZ, ykfA, perR, CXP41_RS01355, CXP41_RS01360, CXP41_RS01365, ykfC, CXP41_RS01385, mmuP, mmuM, fbpC, CXP41_RS01405, CXP41_RS01410, CXP41_RS01410, CXP41_RS01420, CXP41_RS01425, yagB, CXP41_RS24560, yagA, yagE, yagF, yagG, yagH, xynR, argF, argL, CXP41_RS01470, CXP41_RS01480, CXP41_RS01480, CXP41_RS01490, yagK, yagL, CXP41_RS01505, ykgV, CXP41_RS01515, intF |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP025268 | 262011 | 296317 | 34307 | 364 [0] | [2] 371 | ykfI–intF | ykfI,yafW,ykfH,ykfG,yafX,ykfF,CXP41_RS01315,CXP41_RS01320,CXP41_RS01325,CXP41_RS01330,yafZ,ykfA,perR,CXP41_RS01355,CXP41_RS01360,CXP41_RS01365,ykfC,CXP41_RS01385,mmuP,mmuM,fbpC,CXP41_RS01405,CXP41_RS01410,CXP41_RS01410,CXP41_RS01420,CXP41_RS01425,yagB,CXP41_RS24560,yagA,yagE,yagF,yagG,yagH,xynR,argF,argL,CXP41_RS01470,CXP41_RS01480,CXP41_RS01480,CXP41_RS01490,yagK,yagL,CXP41_RS01505,ykgV,CXP41_RS01515,intF |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP025268 | = 262010 | 0 (0.000) | 192 (1.050) | 56/156 | 0.2 | 100% | intergenic (+11/+371) | CXP41_RS01280/ykfI | tRNA‑Thr/type IV toxin‑antitoxin system toxin YkfI |
| ? | NZ_CP025268 | 296318 = | 0 (0.000) | intergenic (‑170/+115) | intF/CXP41_RS01530 | integrase family protein/LysR substrate‑binding domain‑containing protein | |||||
Only 100 of 364 total aligned reads displayed.
GTTTTAACCTTGTCCACCGTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAATTGTTACGTAAGATCTTATCATTCTCCCACCAAAAAATTATCTTAATGTAACAGCTGGTGTAAGTAAATTCTATCAACGAAGATCAATCTTATCTACTGACCAAAAAGGCCTGATAGGGCTTCGCTCACTATACATC > NZ_CP025268/261874‑262147 | ttttAACCTTGTCCACCGTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagt < 2:1758929‑M1/140‑5 (MQ=255) aaCCTTGTCCACCGTGCTTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttacc < 1:3049463‑M1/140‑9 (MQ=255) aaCCTTGTCCACCGTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCTAAgagttacc < 2:1154308‑M1/140‑9 (MQ=255) aaCCTTGTCCACCGTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttacc < 1:194808‑M1/140‑9 (MQ=255) aCCTTGTCCACCGTGATTCATGTTCGTGAACATGTCCTTTCAGCGCCGATATAGCTCAGTTGTTACAGCAGCGCATTCGTAATCCCAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccc < 2:1291250‑M1/140‑10 (MQ=255) aCCTTGTCCACCGTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccc < 2:901984‑M1/140‑10 (MQ=255) aCCTTGTCCACCGTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccc > 1:386019‑M1/1‑131 (MQ=255) aCCTTGTCCACCGTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccc < 1:2686543‑M1/140‑10 (MQ=255) aCCTTGTACACCGTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCACTCGTAATGCGACGGTCGTAGGTTCCACTCCCATTATCGGCACCATTAAAATCAAAgagttaccc < 2:4240180‑M1/140‑10 (MQ=255) ccTTGTCCACCGTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttacccc > 1:863863‑M1/1‑130 (MQ=255) ccTTGTCCACCGTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGCTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTGAAATCAAAgagttacccc > 2:3995857‑M1/1‑130 (MQ=255) cTTGTCCACCGTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttacccca < 1:929295‑M1/140‑12 (MQ=255) cTTGTCCACCGTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttacccca < 1:4419686‑M1/140‑12 (MQ=255) tGTACACCGTAATTCACGTTCGAGAACATGTCCTTTCAGGGCCAATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccata < 2:345299‑M1/140‑14 (MQ=255) gTCCACCGTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatat > 1:3473137‑M1/1‑126 (MQ=255) gTCCACCGTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatat > 2:409141‑M1/1‑126 (MQ=255) gTCCACCGTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatat > 1:153162‑M1/1‑126 (MQ=255) gTCCACCGTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatat > 1:4969701‑M1/1‑126 (MQ=255) gTCCACCGTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatat > 2:4547860‑M1/1‑126 (MQ=255) ccACCGTGATTCACGTTCGTGAACATCTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGCCTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatattt < 1:1421152‑M1/140‑17 (MQ=255) cACCGTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatattta < 1:562057‑M1/140‑18 (MQ=255) ccGTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaa < 2:5483139‑M1/140‑20 (MQ=255) tGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatac > 1:1970940‑M1/1‑118 (MQ=255) gATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaataca < 2:416641‑M1/140‑24 (MQ=255) aTTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacac > 1:3888864‑M1/1‑116 (MQ=255) ttCCCGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacacc < 2:4696749‑M1/140‑26 (MQ=255) ttCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGCCTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacacc > 1:4020339‑M1/1‑115 (MQ=255) ttCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacacc < 2:1635655‑M1/140‑26 (MQ=255) ttCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacacc < 2:4568794‑M1/140‑26 (MQ=255) cACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccac < 2:137809‑M1/140‑28 (MQ=255) gTTCGTGAACATGTCCTTTCGGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaacccatatttaaatacaccacgtt < 1:4518317‑M1/140‑31 (MQ=255) gTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtt < 2:537485‑M1/140‑31 (MQ=255) tGAAGATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAAAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctc < 2:295405‑M1/140‑36 (MQ=255) accatGTCCTTTCACGGCCGATATCGCTCCGTTCGTACAGCCGCGCATTCGTCATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAACATCCAAgagttaccccatatttaaatacaccacgtttcctcct < 1:3173223‑M1/138‑38 (MQ=255) ttcCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgcc < 2:5185435‑M1/139‑43 (MQ=255) gTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgcc < 2:595824‑M1/140‑43 (MQ=255) gTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgcc > 2:2671077‑M1/1‑98 (MQ=255) gTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgcc < 1:1843639‑M1/140‑43 (MQ=255) aGGGCCGATATAACTCAGTTGGTAGAGCAGTGCATTCGTAATGCGAAGGTCGTAGTTTCGACTCCTATTCTCGGCACCATTCCAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgt < 2:3037126‑M1/140‑51 (MQ=255) gggCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtg < 1:2149376‑M1/140‑52 (MQ=255) gggCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtg < 1:2704215‑M1/140‑52 (MQ=255) gggCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtg < 1:4724071‑M1/140‑52 (MQ=255) gggCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtg < 2:1642656‑M1/140‑52 (MQ=255) gATATGGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGTCTCCGATTAGCGGCAGCATTCAAATCAAAgagttaccccttctttacacacaccccctttcctcctgtgccgtagttgtgccatt < 2:284650‑M1/140‑57 (MQ=255) atatAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattg > 1:2480595‑M1/1‑83 (MQ=255) ataGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgta < 2:2471193‑M1/140‑60 (MQ=255) ataGCTCAGTTAGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgta < 1:5544525‑M1/140‑60 (MQ=255) gCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTTCTATTATCGGCCCCAGTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaacc > 2:5001807‑M1/1‑78 (MQ=255) ttGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggca > 1:2791850‑M1/1‑72 (MQ=255) ttGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggca > 2:478803‑M1/1‑72 (MQ=255) ttGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggca > 2:2098572‑M1/1‑72 (MQ=255) ttGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggca > 2:3822180‑M1/1‑72 (MQ=255) gTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaatt < 2:1812441‑M1/140‑72 (MQ=255) gTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaatt < 1:584045‑M1/140‑72 (MQ=255) gTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaatt > 2:1024711‑M1/1‑69 (MQ=255) cgcATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacacctcgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaat > 1:5012342‑M1/1‑60 (MQ=255) cgcATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaat > 1:2205644‑M1/1‑60 (MQ=255) cgcATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaat > 2:4840815‑M1/1‑60 (MQ=255) cgcATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaat > 1:3698847‑M1/1‑60 (MQ=255) cgcATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccc < 1:4368765‑M1/69‑10 (MQ=255) gcATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatg > 1:4950580‑M1/1‑59 (MQ=255) gcATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaata < 2:3552285‑M1/140‑82 (MQ=255) gcATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaata < 1:4191408‑M1/140‑82 (MQ=255) gcATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaata < 1:4667114‑M1/140‑82 (MQ=255) gcATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtctcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaata < 2:52686‑M1/140‑82 (MQ=255) cATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatac > 2:1519856‑M1/1‑58 (MQ=255) aTTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatact < 2:2009699‑M1/140‑84 (MQ=255) cGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgtt < 1:4547860‑M1/140‑87 (MQ=255) gTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCCAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttc < 1:3369560‑M1/140‑88 (MQ=255) gTAATGCGAAGGTCGTAGGTTCGACGCCTATTATCGGCACCATTAAAATCAAAgagttaactcatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccatggcaattcatcaaaatactgttc < 2:4468867‑M1/140‑88 (MQ=255) aTGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctga > 2:691545‑M1/1‑50 (MQ=255) aTGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctga > 1:2522461‑M1/1‑50 (MQ=255) gCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgaca < 1:3423302‑M1/140‑93 (MQ=255) ggTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcagg < 2:4327596‑M1/140‑98 (MQ=255) ggTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcagg < 2:2233141‑M1/140‑98 (MQ=255) ggTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcagg < 1:4823686‑M1/140‑98 (MQ=255) ggTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcagg < 1:5253241‑M1/140‑98 (MQ=255) ggTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcagg < 1:1045214‑M1/140‑98 (MQ=255) gTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcaggc < 1:2385949‑M1/140‑99 (MQ=255) gTCGTAGGTACGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcaggc < 2:3858662‑M1/140‑99 (MQ=255) tAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcaggcagtg < 1:3808169‑M1/140‑103 (MQ=255) tAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatagttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcaggcagtg > 1:3352544‑M1/1‑38 (MQ=255) tAGGTTCGACTACTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcaggcagtg < 2:365888‑M1/140‑103 (MQ=255) cGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcaggcagtgcaggtg > 1:1230152‑M1/1‑32 (MQ=255) cGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcaggcagtgcaggtg > 1:2235911‑M1/1‑32 (MQ=255) gACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcaggcagtgcaggtgc > 1:1476486‑M1/1‑31 (MQ=255) gACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcaggcagtgcaggtgc > 1:4096370‑M1/1‑31 (MQ=255) gACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcaggcagtgcaggtgc > 2:5562354‑M1/1‑31 (MQ=255) ggCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcaggcagtgcaggtgcagacatttaagcc > 1:771156‑M1/1‑18 (MQ=255) cACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcaggcagtgcaggtgcagacatttaagccaa > 2:3221811‑M1/1‑16 (MQ=255) cACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcaggcagtgcaggtgcagacatttaagccaa > 2:1071881‑M1/1‑16 (MQ=255) cACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcaggcagtgcaggtgcagacatttaagccaa > 1:5085519‑M1/1‑16 (MQ=255) cACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttc < 2:2496099‑M1/103‑88 (MQ=255) cACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttc > 1:1636955‑M1/1‑16 (MQ=255) cACCAGTAAAATCAAAgagttaccccagatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcaggcattgcaggtgcagacgtttaagccaa > 2:4111857‑M1/1‑16 (MQ=255) aCCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcaggcagtgcaggtgcagacatttaagccaat > 2:2411135‑M1/1‑15 (MQ=255) aCCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcaggcagtgcaggtgcagacatttaagccaat > 2:1853376‑M1/1‑15 (MQ=255) ttAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcaggcagtgcaggtgcagacatttaagccaattgct > 1:3245954‑M1/1‑11 (MQ=255) tCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcaggcagtgcaggtgcagacatttaagccaattgctgccgcc < 1:1285073‑M1/140‑136 (MQ=255) aaagagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcaggcagtgcaggtgcagacatttaagccaattgctgccgccat > 1:4907093‑M1/1‑3 (MQ=255) | GTTTTAACCTTGTCCACCGTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAATTGTTACGTAAGATCTTATCATTCTCCCACCAAAAAATTATCTTAATGTAACAGCTGGTGTAAGTAAATTCTATCAACGAAGATCAATCTTATCTACTGACCAAAAAGGCCTGATAGGGCTTCGCTCACTATACATC > NZ_CP025268/261874‑262147 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |