BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP025268	571,504	T→C	C29C (TGT→TGC)	CXP41_RS02970 →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	571,504	0	T	C	99.4%	1139.9 / NA	342	C29C (TGT→TGC)	CXP41_RS02970	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (2/0); new base C (209/129); total (212/130)
Fisher's exact test for biased strand distribution p-value = 5.28e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 342 total aligned reads displayed.

TCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGTGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTGGAGGAGGGCAAATGCTTTCGCATGGTGCTTAAACCGTGGCGTGAGA  >  NZ_CP025268/571367‑571639

tCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCgg                                                                                                                                       >  1:4632147/1‑140 (MQ=255)

tCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCgg                                                                                                                                       >  1:5353290/1‑140 (MQ=255)

  aCCGGAGCCTGAACAAATACGGTGCCTTCTGCGCTAAACGGGCACGTTTATGCGCACATACAATCCAAACTATCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAg                                                                                                                                     <  2:2170296/140‑1 (MQ=255)

    cGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAggg                                                                                                                                   <  2:5360327/140‑1 (MQ=255)

     ggAGCCTGAACAACTCCGGTGACTTCTGCGCTAGACGGGGACGTTTATGCGCACATACAATCCAAACTCGCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAgggg                                                                                                                                  <  2:2801786/140‑1 (MQ=255)

      gAGGCTGAACAACTACGGAGACTTCTGAGCTAAACGGGGACGTTTATGCGGACATAACATGCACACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCCCCTAAGGTTGGGCCGCTCTGGAggggc                                                                                                                                 >  2:408947/1‑139 (MQ=255)

        gCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGCGGGGAAg                                                                                                                               >  2:3888175/1‑140 (MQ=255)

          cTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCg                                                                                                                             >  1:1243057/1‑140 (MQ=255)

            gAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTg                                                                                                                           <  1:255220/140‑1 (MQ=255)

              acaacTCCGGTGGCTTCTGCGCTAAACGGGGACGTTTATGCGCACATACCATCCAACCTCTCTTCTCCCTTCACAGATGCACAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGaa                                                                                                                         <  2:1129988/140‑1 (MQ=255)

              acaacTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGaa                                                                                                                         <  1:4245922/140‑1 (MQ=255)

                 acTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACACTCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAggg                                                                                                                                   <  1:2853890/127‑1 (MQ=255)

                 acTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACct                                                                                                                      >  1:4184109/1‑140 (MQ=255)

                 acTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACct                                                                                                                      >  2:1224637/1‑140 (MQ=255)

                  cTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTTACCTCTGCGGAGGGGAAGCGTGAACctc                                                                                                                     >  1:2502952/1‑140 (MQ=255)

                  cTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACctc                                                                                                                     >  1:1031687/1‑140 (MQ=255)

                   tCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGa                                                                                                                                 <  2:56567/127‑1 (MQ=255)

                   tCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGa                                                                                                                                 >  1:56567/1‑127 (MQ=255)

                   tCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACctct                                                                                                                    >  1:624350/1‑140 (MQ=255)

                       gTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCCTCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTcaca                                                                                                                >  1:2247499/1‑140 (MQ=255)

                       gTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTcaca                                                                                                                >  1:4283201/1‑140 (MQ=255)

                       gTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTcaca                                                                                                                >  1:3291163/1‑140 (MQ=255)

                            ttCTGCGCTAAACGGGGACGTTTATGCGGAAATACAATCGAAACTCTCTTCTCCCTTCACAGATGCGGAAATGAACCTGCAAGTCTTTGCATCTAGCGGGGGGCCTCTGGGGAGGGGAAGCGTGAAGCTCACACAAGACg                                                                                                           >  2:4067981/1‑140 (MQ=255)

                               tGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCa                                                                                                        <  2:3762232/140‑1 (MQ=255)

                               tGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCa                                                                                                        >  1:3431551/1‑140 (MQ=255)

                                 cgcTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATc                                                                                                      >  2:3270649/1‑140 (MQ=255)

                                      aaCGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAAtt                                                                                                 >  2:4301116/1‑140 (MQ=255)

                                           ggACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATc                                                                                            >  2:2491803/1‑140 (MQ=255)

                                             aCGTTTATGCGCACATACAATCCACACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATcgc                                                                                          <  2:4015278/140‑1 (MQ=255)

                                                tttATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGc                                                                                       <  1:3500120/140‑1 (MQ=255)

                                                tttATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGc                                                                                       >  1:5278590/1‑140 (MQ=255)

                                                     gcgcACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACtt                                                                                  >  1:1317351/1‑140 (MQ=255)

                                                       gcACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCa                                                                                <  1:1875841/140‑1 (MQ=255)

                                                       gcACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCAGCAAATTACATCGCGGAAACTTCa                                                                                >  1:3915678/1‑140 (MQ=255)

                                                        cacaTACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGACGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCAc                                                                               <  2:1455413/140‑1 (MQ=255)

                                                         acaTACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCAcc                                                                              >  2:3123189/1‑140 (MQ=255)

                                                              cAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTAt                                                                         <  2:5061559/140‑1 (MQ=255)

                                                                aTCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAGTTCTTTGCAGCTAGCGGTTGACCTCTGCGGAGGGGAAGCGTGAACCGCTCACAGGACGGCGTCCAATTACATCGCGGCAACTTCAGCGCTaccc                                                                       >  2:2956244/1‑137 (MQ=255)

                                                                 tCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTAtcgg                                                                      >  2:2627373/1‑140 (MQ=255)

                                                                 tCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTAtcgg                                                                      >  1:2128037/1‑140 (MQ=255)

                                                                 tCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTAtcgg                                                                      >  2:662435/1‑140 (MQ=255)

                                                                     aaCTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTAtcggtcgg                                                                  >  1:1196848/1‑140 (MQ=255)

                                                                     aaCTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTAtcggtcgg                                                                  <  1:4561412/140‑1 (MQ=255)

                                                                     aaCTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTAtcggtcgg                                                                  >  1:1419958/1‑140 (MQ=255)

                                                                     aaCTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTAtcggtcgg                                                                  >  1:1566669/1‑140 (MQ=255)

                                                                     aaCTCTCCTCTCCCTTTACAGATGCAGATATGGACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGCGGAAGAGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTAtcggtcgc                                                                  <  2:4642443/140‑2 (MQ=255)

                                                                           cttctCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCGCAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATc                                                            >  1:5001917/1‑140 (MQ=255)

                                                                           cttctCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATc                                                            <  2:1836591/140‑1 (MQ=255)

                                                                           cttctCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATc                                                            <  1:2694367/140‑1 (MQ=255)

                                                                           cttctCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATc                                                            >  1:3055557/1‑140 (MQ=255)

                                                                           cttctCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATc                                                            >  1:3662730/1‑140 (MQ=255)

                                                                           cttctCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATc                                                            >  1:5400905/1‑140 (MQ=255)

                                                                           cttctCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATc                                                            <  1:4526248/140‑1 (MQ=255)

                                                                           cttctCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTGCACCGCTATCGGTCGGCAGATc                                                            >  1:1617866/1‑140 (MQ=255)

                                                                            ttctCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATcc                                                           <  2:4375702/140‑1 (MQ=255)

                                                                                cccTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGcc                                                       <  2:4693214/140‑1 (MQ=255)

                                                                                cccTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGcc                                                       <  2:2107419/140‑1 (MQ=255)

                                                                                  cTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCtt                                                     >  2:2448652/1‑140 (MQ=255)

                                                                                    tCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCTGTCGGCAGATCCAGCCTTAt                                                   >  2:1038403/1‑140 (MQ=255)

                                                                                    tCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTAt                                                   >  1:3247244/1‑140 (MQ=255)

                                                                                      acaGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCt                                                 >  1:4890315/1‑140 (MQ=255)

                                                                                         gATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTgga                                              <  2:22627/140‑1 (MQ=255)

                                                                                         gATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTgga                                              >  2:2329406/1‑140 (MQ=255)

                                                                                          aTGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTggag                                             >  1:2478883/1‑140 (MQ=255)

                                                                                           tGCAGAACTGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGACGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTggagg                                            <  2:1914227/140‑1 (MQ=255)

                                                                                           tGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTggagg                                            >  2:2887558/1‑140 (MQ=255)

                                                                                           tGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTggagg                                            <  2:3105068/140‑1 (MQ=255)

                                                                                           tGCAGAAATGCACATGCAATTCTTAGAAACTAGCGTTTGAACTCTGCGGAGGGGAAGCGCGAACCTCTCACAAGAGGGCCGCAAATGACAGCACGGCAACTTAACCGCTATCTGTCGGCAGATCCAGCCTTATCTggagg                                            >  2:5425990/1‑140 (MQ=255)

                                                                                                  aTGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTGGAGGAGGGCaa                                     >  1:5153328/1‑140 (MQ=255)

                                                                                                   tGCACCTGCAATTTTGTGCATCTAGCGTTTGACCTCTGCGGCGGGGAAGCGTGAACCTCTCACAAGCCGGCATCAAATTACATCGCGACCACTTCACCGCTGTCGGTCGGCAGGTCCAGTCTTATCTGGAGGAGGGCaaa                                    <  1:894467/140‑1 (MQ=255)

                                                                                                   tGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTGGAGGAGGGCaaa                                    <  2:532552/140‑1 (MQ=255)

                                                                                                    gCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTGGAGGAGGGCAAAt                                   >  1:2961465/1‑140 (MQ=255)

                                                                                                     cACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTGGAGGAGGGCAAATg                                  >  2:5306423/1‑140 (MQ=255)

                                                                                                     cACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTGGAGGAGGGCAAATg                                  >  2:3218365/1‑140 (MQ=255)

                                                                                                     cACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTGGAGGAGGGCAAATg                                  >  2:2395101/1‑140 (MQ=255)

                                                                                                          gCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTGGAGGAGGGCAAATGCTTTc                             >  1:4052807/1‑140 (MQ=255)

                                                                                                              ttCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGACCCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTGGAGGAGGGCAAATGCTTTCGCAt                         <  2:4568924/140‑1 (MQ=255)

                                                                                                              ttCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTGGAGGAGGGCAAATGCTTTCGCAt                         <  1:2330598/140‑1 (MQ=255)

                                                                                                              ttCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTGGAGGAGGGCAAATGCTTTCGCAt                         <  1:1982448/140‑1 (MQ=255)

                                                                                                              ttCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTGGAGGAGGGCAAATGCTTTCGCAt                         <  2:5258954/140‑1 (MQ=255)

                                                                                                              ttCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTGGAGGAGGGCAAATGCTTTCGCAt                         <  1:1387046/140‑1 (MQ=255)

                                                                                                              ttCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTGGAGGAGGGCAAATGCTTTCGCAt                         <  1:3842206/140‑1 (MQ=255)

                                                                                                              ttCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTGGAGGAGGGCAAATGCTTTCGCAt                         <  2:3607957/140‑1 (MQ=255)

                                                                                                              ttCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTGGAGGAGGGCAAATGCTTTCGCAt                         <  1:1812543/140‑1 (MQ=255)

                                                                                                              ttCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTGGAGGAGGGCAAATGCTTTCGCAt                         <  1:723158/140‑1 (MQ=255)

                                                                                                              ttCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTGGAGGAGGGCAAATGCTTTCGCAt                         <  2:1267449/140‑1 (MQ=255)

                                                                                                              ttCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTGGAGGAGGGCAAATGCTTTCGCAt                         <  2:1317351/140‑1 (MQ=255)

                                                                                                               tCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTGGAGGAGGGCAAATGCTTTCGCATg                        <  2:109176/140‑1 (MQ=255)

                                                                                                                cTTTGCATCTAGCGTTTGACCTCTGCGGCGGGGAAGCGTGAACCTCTCACAAGCCGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTGGAGGAGGGCAAATGCTTTCGCATgg                       <  1:4669525/140‑1 (MQ=255)

                                                                                                                cTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTGGAGGAGGGCAAATGCTTTCGCATgg                       <  1:4108425/140‑1 (MQ=255)

                                                                                                                cTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTGGAGGAGGGCAAATGCTTTCGCATgg                       >  2:868701/1‑140 (MQ=255)

                                                                                                                cTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTGGAGGAGGGCAAATGCTTTCGCATgg                       <  2:899102/140‑1 (MQ=255)

                                                                                                                     cATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTGGAGGAGGGCAAATGCTTTCGCATGGTGCtt                  <  2:3463188/140‑1 (MQ=255)

                                                                                                                          aGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTGGAGGAGGGCAAATGCTTTCGCATGGTGCTTAAAcc             <  2:1606959/140‑1 (MQ=255)

                                                                                                                          aGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCAGGAGGAGGGCAAATGCTTTCGCATGGTGCTTAAAcc             >  1:3133952/1‑140 (MQ=255)

                                                                                                                            cGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTGGAGGAGGGCAAATGCTTTCGCATGGTGCTTAAACCGt           <  2:3222266/140‑1 (MQ=255)

                                                                                                                                tGACCTCTGCGGGGGGGAAGCGTGAAGCTCTCACAAGACGGCGTCATATTACATCGCGGCAACTTCACCGCTGTCGGTCGGCAGATCGAGCCTTTTCTGGGGGGGGGGGGTTGCTTTCGCATGGTGCTTAAACCGTGGCg       >  1:3170772/1‑140 (MQ=255)

                                                                                                                                tGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTGGAGGAGGGCAAATGCTTTCGCATGGTGCTTAAACCGTGGCg       >  2:724647/1‑140 (MQ=255)

                                                                                                                                 gACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTGGAGGAGGGCAAATGCTTTCGCATGGTGCTTAAACCGTGGCGt      >  1:3774611/1‑140 (MQ=255)

                                                                                                                                  aCCTCGGCGGAGGGGAAGCGTGAACCTCTCACAAGCCGGCATCAAATTACAGCGCGGCAACCTCACCGCTATCGGTTGGCAGATCCAGCCTGATCTGGAGGAGGGCAAATGCTTTCGCATGGTGCTTAAACCGTGGCGTg     <  2:2603350/140‑1 (MQ=255)

TCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGTGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTGGAGGAGGGCAAATGCTTTCGCATGGTGCTTAAACCGTGGCGTGAGA  >  NZ_CP025268/571367‑571639

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`