| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 3,864,419 | T→C | pseudogene (1103/1613 nt) | CXP41_RS20140 ← | PTS sugar transporter subunit IIB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 3,864,419 | 0 | T | C | 99.4% | 1164.1 / NA | 345 | pseudogene (1103/1613 nt) | CXP41_RS20140 | PTS sugar transporter subunit IIB |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (197/146); minor base A (1/1); total (198/147) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 345 total aligned reads displayed.
TGCACATGTTGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CC‑ATGT‑‑‑T‑‑‑CACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCG > NZ_CP025268/3864283‑3864550 | gTTGAACTGCATTATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCTATTTGGGTCAGCATCATATCCGCGTGGTTGCTGGACATCGGGATCAAGTTTTGCGGTAAAACCTAGTCAATcg > 2:1786058/1‑139 (MQ=255) cTGCAGAATCAGTGTGCGGAAAACCATAAAGTACACTAGGGGAAAGCACAACCCAATGGCGATTTGCGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCTGGTTTGCGGTAAACCCTAGTCAATCAGACCTc < 2:2090628/140‑1 (MQ=255) gCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCg > 1:3142946/1‑140 (MQ=255) cAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTc < 1:4606726/126‑1 (MQ=255) cAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCG‑c > 1:743388/1‑140 (MQ=255) cAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCG‑c > 1:3907138/1‑140 (MQ=255) gAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATGATATCCGCGTGGTAGCTGAACATCGGGAGCCAGTTTTGCGGTAAAACATAGTCAATCAGACCTCCG‑ccc > 2:4897147/1‑139 (MQ=255) gAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCG‑ccc < 1:5327024/140‑2 (MQ=255) tCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCG‑cccatg > 2:862111/1‑136 (MQ=255) aGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGt‑‑‑t < 2:1151285/140‑1 (MQ=255) aGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGt‑‑‑t < 2:4060879/140‑1 (MQ=255) gtgtGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tg < 1:917896‑M1/140‑2 (MQ=255) gtgtGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATAACCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGt‑‑‑tt > 1:2830501/1‑139 (MQ=255) gtgCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcc < 1:1873266‑M1/140‑4 (MQ=255) gtgCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcc < 2:459140‑M1/140‑4 (MQ=255) gCGGGAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgccca < 2:312319‑M1/140‑6 (MQ=255) gCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgccca < 1:3705405‑M1/140‑6 (MQ=255) cGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccac < 2:4125218‑M1/140‑7 (MQ=255) cGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccac < 2:3226816‑M1/140‑7 (MQ=255) ggAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccacc < 2:2723264‑M1/140‑8 (MQ=255) aaaaCCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccac < 1:4049425‑M1/140‑10 (MQ=255) aaCCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacac < 1:5070769‑M1/140‑12 (MQ=255) aCCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacacc > 1:4574822‑M1/1‑128 (MQ=255) ccACGAGGTACAGCAGGGTAAAGCACAATCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCTGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacacca < 2:538679‑M1/140‑14 (MQ=255) ccACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCCGCATCATATCCGCGTGGTTGCTCAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacacca < 2:1991709‑M1/140‑14 (MQ=255) cGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaag < 1:1057651‑M1/140‑17 (MQ=255) cGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaag > 1:2943996‑M1/1‑124 (MQ=255) cGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaag < 2:357409‑M1/140‑17 (MQ=255) aaGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagag < 1:1534749‑M1/140‑19 (MQ=255) aGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagaga < 2:2629759‑M1/140‑20 (MQ=255) aGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagaga < 2:2512135‑M1/140‑20 (MQ=255) cagcagGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagataca < 2:924412‑M1/140‑24 (MQ=255) cagcagGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagataca > 1:4376438‑M1/1‑117 (MQ=255) agcagGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacat > 2:5216122‑M1/1‑116 (MQ=255) ggTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacgg > 2:4485317‑M1/1‑111 (MQ=255) ggTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacgg > 1:2778134‑M1/1‑111 (MQ=255) ggTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacgg > 1:1967562‑M1/1‑111 (MQ=255) ggTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacgg > 2:3335256‑M1/1‑111 (MQ=255) gTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggt < 1:4138429‑M1/140‑31 (MQ=255) gTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggt < 2:1401049‑M1/140‑31 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacacccaagagatacattacggtc > 2:3984564‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtc > 1:3836738‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtc > 2:462549‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtc > 1:2424919‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtc > 1:3034381‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtc > 1:845443‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtc > 2:3457928‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtc > 2:470827‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtc < 1:2058537‑M1/140‑32 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtc > 1:3434781‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtc < 1:415347‑M1/140‑32 (MQ=255) acaACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacatt < 1:2616905‑M1/140‑38 (MQ=255) caACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattg < 1:60306‑M1/140‑39 (MQ=255) aaCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattga > 2:475129‑M1/1‑101 (MQ=255) aaCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacgggcgacattga > 1:429246‑M1/1‑101 (MQ=255) aCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgag > 1:5220179‑M1/1‑100 (MQ=255) aCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgag > 2:3511839‑M1/1‑100 (MQ=255) aCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgag < 2:2424919‑M1/140‑41 (MQ=255) aCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgag < 1:4496092‑M1/140‑41 (MQ=255) aCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑AGGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgag < 2:2147805‑M1/140‑41 (MQ=255) cccAATGGCTATAAGGGTCAGCATCATAGCAGCGTGGTTGCTGAACATCGGGATCCAGTTTGGCGGTAAAACCGAGTCAATCAGATCTCCGCCC‑ATGT‑‑‑TGCCCAACACACCAAAGAGATACCTTACTTTTGACATTTAgg > 2:2533188/1‑140 (MQ=255) cccAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgagg > 1:2031898‑M1/1‑99 (MQ=255) cccAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGGAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagggatacattacggtcgacattgagg > 1:3324393‑M1/1‑99 (MQ=255) tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgcc > 1:1837946‑M1/1‑94 (MQ=255) cGATTTGGGTCAGCATCATCTCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 2:2979517‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 1:5050250‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 1:1260775‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 2:1292473‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 1:3204416‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 2:2866613‑M1/140‑50 (MQ=255) gATTTGGGTCAGCATCATATCCGCGTGGGTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTAAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagca < 1:5370327‑M1/140‑51 (MQ=255) aTTTGGGTCAGCATCATATCCGCGGGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgaccttgaggccgccagcac > 2:1147516‑M1/1‑89 (MQ=255) aTTTGGGTCAGCATCATAGCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCGCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacagtgaggccgccagcac > 2:3048631‑M1/1‑89 (MQ=255) tttGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTCGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacg > 2:190914‑M1/1‑88 (MQ=255) ttGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacgg > 1:2160642‑M1/1‑87 (MQ=255) tcatATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgca < 2:648754‑M1/140‑65 (MQ=255) tcatATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgca < 1:2578952‑M1/140‑65 (MQ=255) tatCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaac > 1:1738860‑M1/1‑73 (MQ=255) tatCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaac > 1:2975123‑M1/1‑73 (MQ=255) tatCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaaa > 1:1112794‑M1/1‑73 (MQ=255) cagccGCGTGGTTGCTTAACATCGGGAGCCAGTTGTGCGGTAAATCCGAGTCAATCAGACCTCCGCCC‑ATGTGGCC‑‑‑CACCCCACCAAAGATATACATTACGGTCGACAGTGAGGGCTCCAGCACGGCGGATACCGCTAAc > 2:4383423/4‑140 (MQ=255) tCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacag < 2:57895‑M1/140‑70 (MQ=255) cgcgTGGTTGCTGAACATAGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagca < 2:3962935‑M1/140‑72 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaa > 1:3950911‑M1/1‑68 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaa > 1:550707‑M1/1‑68 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgcgtaccgcaaacagcaa > 1:4846732‑M1/1‑68 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc > 1:5286632‑M1/1‑68 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAAGGAGACCTCCT‑CCGATGT‑‑‑Tgcccaccacacaaaagagatacattacggtcgacattgagaccgccagcacggcgtgtaccgcaaacagcaa > 2:1553878‑M1/1‑68 (MQ=255) aaCATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaa > 1:158935‑M1/1‑56 (MQ=255) aaCATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaa < 1:137535‑M1/140‑85 (MQ=255) tCGGGATCCTGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagg < 1:3538818‑M1/140‑89 (MQ=255) tCGGGATCCAGTTTTGCGGTGAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaaccgg > 2:1234052‑M1/1‑52 (MQ=255) cGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagga < 2:1044261‑M1/140‑90 (MQ=255) tGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccag < 1:3881212‑M1/140‑103 (MQ=255) tGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccag < 1:470827‑M1/140‑103 (MQ=255) tGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccag > 1:99865‑M1/1‑38 (MQ=255) tGCGGTAAAACCTAGTCAATCAGACCTCAGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccag > 1:4234286‑M1/1‑38 (MQ=255) tAAAACCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggtt < 1:2341248‑M1/140‑108 (MQ=255) aaaCCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcg > 1:4387260‑M1/1‑31 (MQ=255) aaaCCTAGTCAATCAGACCTCCGCCC‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcg > 1:2291958‑M1/1‑31 (MQ=255) | TGCACATGTTGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CC‑ATGT‑‑‑T‑‑‑CACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCG > NZ_CP025268/3864283‑3864550 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |