mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 1,292,848 | 0 | A | T | 64.0% | 33.7 / inf | 308 | noncoding (11/132 nt) | CXP41_RS06830 | RtT sRNA |
| * | NZ_CP025268 | 1,293,000 | 0 | A | G | 62.1% | 132.4 / 286.2 | 281 | noncoding (37/132 nt) | CXP41_RS06835 | RtT sRNA |
| * | NZ_CP025268 | 1,292,991 | 0 | C | T | 58.7% | 100.0 / 299.5 | 292 | noncoding (46/132 nt) | CXP41_RS06835 | RtT sRNA |
| * | NZ_CP025268 | 1,292,810 | 0 | G | A | 53.0% | 148.8 / inf | 425 | noncoding (49/132 nt) | CXP41_RS06830 | RtT sRNA |
| * | NZ_CP025268 | 1,292,982 | 0 | A | G | 51.9% | 34.3 / inf | 291 | noncoding (55/132 nt) | CXP41_RS06835 | RtT sRNA |
| * | NZ_CP025268 | 448,506 | 0 | T | C | 21.9% | 748.5 / 52.8 | 333 | M396V (ATG→GTG) | cyoB | cytochrome o ubiquinol oxidase subunit I |
| * | NZ_CP025268 | 2,755,971 | 0 | A | C | 20.0% | 480.3 / 28.0 | 181 | E51D (GAA→GAC) | recN | DNA repair protein RecN |
| Marginal new junction evidence (lowest skew 10 of 329 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP025268 | 695911 = | 0 (0.000) | 191 (0.640) +GAAGAAACAATC |
41/252 | 3.1 | 57.5% | intergenic (‑33/+2) | CXP41_RS03680/CXP41_RS03685 | tRNA‑Gln/tRNA‑Gln |
| ? | NZ_CP025268 | = 696182 | 309 (0.950) | intergenic (‑1/+379) | CXP41_RS03695/asnB | tRNA‑Met/asparagine synthase B | |||||
| * | ? | NZ_CP025268 | = 1214906 | 305 (0.940) | 71 (0.250) | 38/244 | 3.3 | 21.8% | coding (305/630 nt) | CXP41_RS06370 | protein StfP |
| ? | NZ_CP025268 | = 1216702 | 239 (0.830) | coding (57/540 nt) | CXP41_RS06385 | phage tail protein | |||||
| * | ? | NZ_CP025268 | 4544596 = | 20 (0.060) | 61 (0.200) | 30/258 | 4.9 | 60.2% | intergenic (+49/‑433) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
| ? | NZ_CP025268 | 4544910 = | 62 (0.200) | intergenic (+363/‑119) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||
| * | ? | NZ_CP025268 | = 3549238 | 475 (1.460) | 45 (0.160) +21 bp |
26/234 | 5.0 | 10.2% | coding (1519/2085 nt) | malQ | 4‑alpha‑glucanotransferase |
| ? | NZ_CP025268 | 3549260 = | 458 (1.410) | coding (1497/2085 nt) | malQ | 4‑alpha‑glucanotransferase | |||||
| * | ? | NZ_CP025268 | = 4544604 | 28 (0.090) | 30 (0.100) | 19/258 | 7.3 | 40.8% | intergenic (+57/‑425) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
| ? | NZ_CP025268 | = 4544900 | 61 (0.200) | intergenic (+353/‑129) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||
| * | ? | NZ_CP025268 | = 3356291 | 401 (1.230) | 19 (0.060) | 15/260 | 8.5 | 4.9% | coding (882/4461 nt) | gltB | glutamate synthase large subunit |
| ? | NZ_CP025268 | = 3356327 | 367 (1.200) | coding (918/4461 nt) | gltB | glutamate synthase large subunit | |||||
| * | ? | NZ_CP025268 | = 4411560 | 335 (1.030) | 17 (0.060) | 13/256 | 9.1 | 4.7% | coding (360/732 nt) | rlmB | 23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB |
| ? | NZ_CP025268 | = 4411623 | 375 (1.240) | coding (423/732 nt) | rlmB | 23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB | |||||
| * | ? | NZ_CP025268 | 3009904 = | 233 (0.720) | 15 (0.050) | 12/244 | 9.1 | 6.6% | coding (89/1197 nt) | dpaL | diaminopropionate ammonia‑lyase |
| ? | NZ_CP025268 | 3009920 = | 220 (0.770) | coding (105/1197 nt) | dpaL | diaminopropionate ammonia‑lyase | |||||
| * | ? | NZ_CP025268 | = 2717853 | 486 (1.490) | 19 (0.060) | 12/254 | 9.4 | 4.6% | coding (934/1335 nt) | srmB | ATP‑dependent RNA helicase SrmB |
| ? | NZ_CP025268 | = 2717932 | 343 (1.150) | coding (1013/1335 nt) | srmB | ATP‑dependent RNA helicase SrmB | |||||
| * | ? | NZ_CP025268 | 760872 = | 330 (1.010) | 15 (0.050) | 12/254 | 9.4 | 5.0% | coding (302/1218 nt) | odhB | 2‑oxoglutarate dehydrogenase complex dihydrolipoyllysine‑residue succinyltransferase |
| ? | NZ_CP025268 | 760939 = | 268 (0.900) | coding (369/1218 nt) | odhB | 2‑oxoglutarate dehydrogenase complex dihydrolipoyllysine‑residue succinyltransferase | |||||