| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 1,075,387 | +T | intergenic (+29/+226) | ymdF → / ← rutG | general stress protein/pyrimidine utilization transport protein G |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 1,075,387 | 1 | . | T | 98.9% | 981.0 / 0.9 | 261 | intergenic (+29/+226) | ymdF/rutG | general stress protein/pyrimidine utilization transport protein G |
| Reads supporting (aligned to +/- strand): ref base . (0/3); new base T (98/159); total (98/163) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.93e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 261 total aligned reads displayed.
GGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAACCGGGCTAATCAATGACGAAT‑CAT‑TTTTG‑CTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGT > NZ_CP025268/1075257‑1075516 | ggTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGc < 2:984307/140‑1 (MQ=255) ggACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGGGGTAGGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGCATGCAT‑TTTTGTCTGTAGCTCg > 2:1498963/1‑140 (MQ=255) acagcacagcGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTc > 2:603261/1‑140 (MQ=255) cagcGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAg < 2:4979262/140‑1 (MQ=255) cGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGGAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCa > 1:4366231/1‑140 (MQ=255) ggggTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATc > 1:3981793/1‑140 (MQ=255) gggTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCa < 1:4167291/140‑1 (MQ=255) gggTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCa > 1:5011739/1‑140 (MQ=255) gTAATTTCAAGAATGCCCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCAcc < 1:3000681/140‑1 (MQ=255) gTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCAcc > 2:4803111/1‑140 (MQ=255) gTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCAcc > 1:5001209/1‑140 (MQ=255) aaTTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCAccgc < 1:4497792/140‑1 (MQ=255) ttCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCgg < 1:1576066/140‑1 (MQ=255) tCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGt < 1:1343922/140‑1 (MQ=255) tCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGt < 2:4931413/140‑1 (MQ=255) tCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGt < 2:2918256/140‑1 (MQ=255) aaGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTa < 2:1662665/140‑1 (MQ=255) gAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTAcc < 2:3461120/140‑1 (MQ=255) gAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTAcc < 1:2724892/140‑1 (MQ=255) aTGACCCGCAGGGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCg < 2:793795/140‑1 (MQ=255) aTGACCCGCAGCGCGCATCTGAATCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCg < 1:798361/140‑1 (MQ=255) aTGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCg < 1:1456735/140‑1 (MQ=255) aTGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCg < 1:2157569/140‑1 (MQ=255) aTGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCg < 1:1930914/140‑1 (MQ=255) ccGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCggtggt < 1:4576062/140‑1 (MQ=255) gCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTg < 1:462544/140‑1 (MQ=255) cAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGa > 1:1212532/1‑140 (MQ=255) aGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGcc < 2:1695712/113‑1 (MQ=255) cgcgcATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATAc > 1:1028828/1‑140 (MQ=255) gcgcATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACt < 1:1919904/140‑1 (MQ=255) cgcATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACtg < 1:977667/140‑1 (MQ=255) gcATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACtga < 1:4952350/140‑1 (MQ=255) tCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACtgatga < 1:609542/140‑1 (MQ=255) tCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACtgatga < 1:3180181/140‑1 (MQ=255) aGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAAt < 1:702076/140‑1 (MQ=255) gCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATg < 1:3224895/140‑1 (MQ=255) ggTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTaa > 1:3621828/1‑140 (MQ=255) ggTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTaa > 2:452407/1‑140 (MQ=255) ggTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTaa > 2:2568813/1‑140 (MQ=255) ggTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCCGTGGTTGATACTGATGACAAATGTaa > 2:1178446/1‑140 (MQ=255) tAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGc > 1:1604825/1‑140 (MQ=255) aaaaGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTg > 1:480144/1‑140 (MQ=255) ggtggtAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTg < 1:663637/140‑1 (MQ=255) tgggAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGAt > 1:3678452/1‑140 (MQ=255) ggtAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATg > 2:4435984/1‑140 (MQ=255) ggtAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATg > 1:2871556/1‑140 (MQ=255) gtAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATgc > 2:2501121/1‑140 (MQ=255) tAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATgcg < 1:4316449/140‑1 (MQ=255) tAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATgcg < 1:3879454/140‑1 (MQ=255) tAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATgcg < 1:1988326/140‑1 (MQ=255) aaaGAGCAGTCACGGCAAAATCGCCACCTCGCCGGGATAAGCTATCACAACTGCAC‑TTTTGATTTTCGCTCGTCAAAAAGCCATCTCCGCAAGTTCCCCGGTGGTTTATACTAATGACAAATGTAAGCTTGCCGGATgcg < 2:4214190/139‑1 (MQ=255) agagCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGcgcg < 1:5076910/140‑1 (MQ=255) agagCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGcgcg < 2:2273932/140‑1 (MQ=255) agagCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGcgcg < 2:879105/140‑1 (MQ=255) gagCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGa < 2:315517/140‑1 (MQ=255) gagCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGa < 1:2434284/140‑1 (MQ=255) agCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGAt < 1:3791769/140‑1 (MQ=255) cAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGc > 2:3669566/1‑140 (MQ=255) tCACGGCAAAAGCGACAACTATCCGTCCTAATAAATGACGAATGCATCTTTAT‑CTGTAGCTAATAAAAAAGCAATCACCGCCGGTTACCCGGTGGTTGACACTGATGACAAATGGAAGCTTGCCTCTAGCGCGATGCTTa < 2:4032252/140‑1 (MQ=255) tCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTa < 1:2369348/140‑1 (MQ=255) tCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTa > 1:702552/1‑140 (MQ=255) tCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTa > 1:1836589/1‑140 (MQ=255) tCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TGTTGTCTGTAGCTCGGCAAAAAGCCATCACCGCCGGTGACCGAGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTa > 2:1104609/1‑140 (MQ=255) tCACGGAAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTa < 1:4892439/140‑1 (MQ=255) cACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTAt < 1:514160/140‑1 (MQ=255) gCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTATGCTTGCCTGATGCGCGATGCTTATCAgg < 2:221354/140‑1 (MQ=255) gCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTAt > 2:4290132/1‑136 (MQ=255) gCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTAt < 1:4290132/136‑1 (MQ=255) gCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAgg > 1:1478595/1‑140 (MQ=255) gCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAgg > 2:3293667/1‑140 (MQ=255) aaaGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCt > 2:1254246/1‑140 (MQ=255) aCTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGCTACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCagaaga < 2:3844260/140‑1 (MQ=255) aCTAGCCGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCagaaga < 1:1694219/140‑1 (MQ=255) gccGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGc > 1:567520/2‑140 (MQ=255) ccgtgatAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTCCCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCa < 2:4131998/134‑1 (MQ=255) ccGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCAccgc > 1:2502773/1‑59 (MQ=255) ccGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACACATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCa > 2:3017495/1‑140 (MQ=255) ccGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCa < 2:487396/140‑1 (MQ=255) ccGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCa < 1:1167985/140‑1 (MQ=255) ccGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCa < 2:946987/140‑1 (MQ=255) ccGGGCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCa < 2:526149/140‑1 (MQ=255) gCTAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAatat > 2:1880493/1‑140 (MQ=255) tAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCGGGCCTACCAGAAGATTGCAatatat < 2:4584859/140‑1 (MQ=255) tAATCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAatatat < 1:4149121/140‑1 (MQ=255) tAATCAATGACGAATGCAT‑TTTTGTCTGTAGCCCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGCTGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAatatat < 2:2857937/140‑1 (MQ=255) aTCAATGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGCAGATTGAAATATATTg > 2:2006029/1‑140 (MQ=255) tGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAAttt > 2:1978767/1‑140 (MQ=255) tGACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAAttt > 2:2652905/1‑140 (MQ=255) gACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCg > 2:1021657/1‑55 (MQ=255) gACGAATGCAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCg < 1:1021657/55‑1 (MQ=255) ctaatgcAT‑TTTTGTCTGTACCTCGTCAAAAAGCCATCACAGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAATCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCa < 2:3978799/134‑1 (MQ=38) cgaatgcAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCa < 2:3423850/134‑1 (MQ=255) cgaatgcAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCa < 1:2116666/134‑1 (MQ=255) cgaatgcAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCa < 1:2593626/134‑1 (MQ=255) cgaatgcAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCa < 1:2659188/134‑1 (MQ=255) aatgcAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACt > 2:3771180/5‑140 (MQ=255) aatgcAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACt < 2:480144/136‑1 (MQ=255) aatgcAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACt < 1:1517713/136‑1 (MQ=255) aatgcAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACt > 1:3488833/5‑140 (MQ=255) aatgcAT‑TTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGACACCCGGCGGTCGATACTGACAACAGATGAAAGCTTGCCTGACGCGCTATCATCACCAGGCCTACCCTAAAATAGCAATATAGCTAATTTGCAcg > 2:1395399/5‑139 (MQ=255) | GGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAACCGGGCTAATCAATGACGAAT‑CAT‑TTTTG‑CTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGT > NZ_CP025268/1075257‑1075516 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |