Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
RA | NZ_CP025268 | 1,224,095 | +GA | coding (248/249 nt) | CXP41_RS06440 → | protein YmgC |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NZ_CP025268 | 1,224,094 | 1 | . | A | 97.3% | 837.8 / 11.4 | 224 | coding (247/249 nt) | CXP41_RS06440 | protein YmgC |
Reads supporting (aligned to +/- strand): ref base . (5/1); new base A (117/101); total (122/102) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 2.24e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
* | NZ_CP025268 | 1,224,094 | 2 | . | G | 97.3% | 735.1 / 11.5 | 224 | coding (247/249 nt) | CXP41_RS06440 | protein YmgC |
Reads supporting (aligned to +/- strand): ref base . (5/1); new base G (117/101); total (122/102) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 2.24e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 241 total aligned reads displayed.
CAGGCTTTACGCTTGCGTTTAAAAGATGAAACCAGTGTGATTCTTTCTGATCTCTATCTGCAAATATTGCAGTACATTGAAATGCATAAGACTACACTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑T‑‑AACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGGTGTCAAGAATGGAGAGTTCTCGCTCTC > NZ_CP025268/1223956‑1224223 || cAGGCTTTACGCTTGCGTTTAAAAGATGAAACCAGTGTGATTCTTTCTGATCTCTATCTGCAAATATTGCAGTACATTGAAATGCATAAGACTACACTAACGGATATCATTATTAATGACAGGGACTCCGTGCTCTCT‑‑T‑‑a > 2:2373125/1‑140 (MQ=255) aGGCTTTACGCTTGCGTTTAAAAGATGAAACCAGTGTGATTCTTTCTGATCTCTATCTGCAAATATTGCAGTACATTGAAATGCATAAGACTACACTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑T‑‑ag > 2:3324614/1‑139 (MQ=255) gCTTTACGCTTGCGTTTAAAAGATGAAACCAGTGTGATTCTTTCTGATCTCTATCTGCAAATATTGCAGTACATTGAAATGCATAAGACTACACTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑T‑‑agaa > 1:2663229/1‑137 (MQ=255) gCTTTACGCTTGCGTTTAAAAGATGAAACCAGTGTGATTCTTTCTGATCTCTATCTGCAAATATTGCAGTACATTGAAATGCATAAGACTACACTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑T‑‑agaa > 1:3227543/1‑137 (MQ=255) gCTTTACGCTTGCGTTTAAAAGATGAAACCAGTGTGATTCTTTCTGATCTCTATCTGCAAATATTGCAGTACATTGAAATGCATAAGACTACACTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑T‑‑agaa > 1:3367216/1‑137 (MQ=255) cTTTACGCTTGCGTTTAAAAGATGAAACCAGTGTGATTCTTTCTGATCTCTATCTGCAAATATTGCAGTACATTGAAATGCATAAGACTACACTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑T‑‑agaac < 1:2755690/140‑5 (MQ=255) cTTGCGTTTAAAAGATGAAACCAGTGTGATTCTTTCTGATCTCTATCTGCAAATATTGCAGTACATTGAAATGCATAAGACTACACTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTa < 2:1996013/140‑1 (MQ=255) cTTGCGTTTAAAAGATGAAACCAGTGTGATTCTTTCTGATCTCTATCTGCAAATATTGCAGTACATTGAAATGCATAAGACTACACTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTa < 1:3768084/140‑1 (MQ=255) cTTGCGTTTAAAAGATGAAACCAGTGTGATTCTTTCTGATCTCTATCTGCAAATATTGCAGTACATTGAAATGCATAAGACTACACTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTa < 1:1787175/140‑1 (MQ=255) cTTGCGTTTAAAAGATGAAACCAGTGTGATTCTTTCTGATCTCTATCTGCAAATATTGCAGTACATTGAAATGCATAAGACTACACTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTa < 2:3051048/140‑1 (MQ=255) tGCGTTTAAAAGATGAAACCAGTGTGATTCTTTCTGATCTCTATCTGCAAATATTGCAGTACATTGAAATGCATAAGACTACACTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAg > 2:499067/1‑140 (MQ=255) tGCGTTTAAAAGATGAAACCAGTGTGATTCTTTCTGATCTCTATCTGCAAATATTGCAGTACATTGAAATGCATAAGACTACACTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAg > 2:3257407/1‑140 (MQ=255) cGTTTAAAAGATGAAACCAGTGTGATTCTTTCTGATCTCTATCTGCAAATATTGCAGTACATTGAAATGCATAAGACTACACTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGt > 2:59268/1‑140 (MQ=255) tttAAAAGATGAAACCAGTGTGATTCTTTCTGATCTCTATCTGCAAATATTGCAGTACATTGAAATGCATAAGACTACACTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGttt < 2:4614805/140‑1 (MQ=255) tttAAAAGATGAAACCAGTGTGATTCTTTATGATCTCTATCTGCAAATATTGCAGTACATTGAAATGCATAAGACTACACTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGttt < 2:627433/140‑1 (MQ=255) gATGAAACCAGTGTGATTCTTTCTGATCTCTATCTGCAAATATTGCAGTACATTGAAATGCATAAGACTACACTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATa < 2:398784/140‑1 (MQ=255) gAAACCAGTGTGATTCTTTCTGATCTCTATCTGCAAATATTGCAGTACATTGAAATGCATAAGACTACACTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAAc > 2:1030728/1‑140 (MQ=255) aaaCCAGTGTGATTCTTTCTGATCTCTATCTGCAAATATTGCAGTACATTGAAATGCATAAGACTACACTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGGTTTAGAATAAACa < 1:445751/140‑1 (MQ=255) acaaGTGTGATTCTTTCTGATCTCTATCTGCAAATATTGCAGTACATTGAAATGCATAAGACTACACTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATc < 1:577282/137‑1 (MQ=255) aCCAGTGTGATTCTTTCTGATCTCTATCTGCAAATATTGCAGTACATTGAAATGCATAAGACTACACTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATc > 1:1758062/1‑140 (MQ=255) aCCAGTGTGATTCTTTCTGATCTCTATCTGCAAATATTGCAGTACATTGAAATGCATAAGACTACACTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATc < 1:2851452/140‑1 (MQ=255) cAGTGTGATTCTTTCTGATCTCTATCTGCAAATATTGCAGTACATTGAAATGCATAAGACTACACTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAg < 2:1092715/140‑1 (MQ=255) cAGTGTGATTCTTTCTGATCTCTATCTGCAAATATTGCAGTACATTGAAATGCATAAGACTACACTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAg < 1:1082052/140‑1 (MQ=255) gtgtGATTCTTTCTGATCTCTATCTGCAAATATTGCAGTACATTGAAATGCATAAGACTACACTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCt > 2:3978350/1‑140 (MQ=255) ttctttctGATCTCTATCTGCAAATATTGCAGTACATTGAAATGCATAAGACTACACTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCa > 1:499413/1‑140 (MQ=255) ttctttctGATCTCTATCTGCAAATATTGCAGTACATTGAAATGCATAAGACTACACTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCa < 2:3197880/140‑1 (MQ=255) tttctGATCTCTATCTGCAAATATTGCAGTACATTGAAATGCATAAGACTACACTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCa < 2:3274201/140‑1 (MQ=255) tctGATCTCTATCTGCAAATATTGCAGTACATTGAAATGCATAAGACTACACTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATg < 1:1330271/140‑1 (MQ=255) ctctATCTGCAAATATTGCAGTACATTGAAATGCATAAGACTACACTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATg > 1:4241329/1‑140 (MQ=255) tctATCTGCAAATATTGCAGTACATTGAAATGCATAAGACTACACTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGc > 1:3960898/1‑140 (MQ=255) ctATCTGCAAATATTGCAGTACATTGAAATGCATAAGACTACACTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCa < 1:4978592/140‑1 (MQ=255) tATCTGCAAATATTGCAGTACATTGAAATGCATAAGACTACACTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCaa > 1:3315831/1‑140 (MQ=255) aTCTGCAAATATTGCAGTACATTGAAATGCATAAGACTACACTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCaaa < 2:2227027/140‑1 (MQ=255) cAAATATTGCAGTACATTGAAATGCATAAGACTACACTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAg < 2:1154838/140‑1 (MQ=255) cAAATATTGCAGTACATTGAAATGCATAAGACTACACTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAg < 1:2503663/140‑1 (MQ=255) tatTGCAGTACATTGAAATGCATAAGACTACACTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCAtt > 1:899623/1‑140 (MQ=255) ttGCAGTACATTGAAATGCATAAGACTACACTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTc < 2:2011611/140‑1 (MQ=255) ttGCAGTACATTGAAATGCATAAGACTACACTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTc < 1:3994110/140‑1 (MQ=255) ttGCAGTACATTGAAATGCATAAGACTACACTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTc < 1:3103043/140‑1 (MQ=255) ttGCAGTACATTGAAATGCATAAGACTACACTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTc < 2:4502008/140‑1 (MQ=255) gCAGTACATTGAAATGCATAAGACTACACTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAg > 2:71511/1‑140 (MQ=255) cATTGAAATGCATAAGACTACACTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTa > 1:815964/1‑140 (MQ=255) tGAAATGCATAAGACTACACTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTAttc > 2:2782632/1‑138 (MQ=255) tGAAATGCATAAGACTACACTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGc > 1:1656974/1‑140 (MQ=255) tGAAATGCATAAGACTACACTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGc > 1:3005411/1‑140 (MQ=255) tGAAATGCATAAGACTACACTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCG‑‑TAGAACTTGAGTAAGGTTGTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGc > 1:2232716/1‑140 (MQ=255) gAAATGCATAAGACTACACTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCt < 2:1238984/140‑1 (MQ=255) gAAATGCAGAAGACTACACTAACGGATATCATTATTAAGGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTAAGCATTTAAGGCGTTATGCt < 2:5051640/140‑1 (MQ=255) tGCATAAGACTACACTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCt > 2:355252/1‑140 (MQ=255) cATAAGACTACACTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCtta > 2:1870390/1‑140 (MQ=255) cATAAGACTACACTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCtta > 2:5097166/1‑140 (MQ=255) tAAGACTACACTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCttatt > 1:3432420/1‑140 (MQ=255) tACACTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTcc < 1:3696794/140‑1 (MQ=255) tACACTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTcc < 2:1414563/140‑1 (MQ=255) cacTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGc > 2:2904957/1‑140 (MQ=255) cacTAACGGATATAATTATTAATGACAGGGAATCCGTGCTCACT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGc > 2:978093/1‑140 (MQ=255) acTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCa > 2:3568936/1‑140 (MQ=255) aCGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAGCATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGATTTCTTATTATGGCCGCAatat > 2:90848/1‑140 (MQ=255) aCGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAatat > 2:741162/1‑140 (MQ=255) aCGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAatat > 1:1392430/1‑140 (MQ=255) aCGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAatat > 1:607996/1‑140 (MQ=255) aCGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAatat > 1:4188422/1‑140 (MQ=255) aCGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAatat > 1:4331856/1‑140 (MQ=255) aCGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAatat > 2:2872701/1‑140 (MQ=255) aCGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTACGCAatat > 1:2702293/1‑140 (MQ=255) cGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATc > 2:3617827/1‑140 (MQ=255) cGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATc > 1:1210804/1‑140 (MQ=255) gATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAg < 1:542571/140‑1 (MQ=255) tatCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGgt > 2:3823586/1‑140 (MQ=255) tatCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGgt > 2:3756628/1‑140 (MQ=255) tatCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGgt > 1:1505481/1‑140 (MQ=255) atCATTATTAATGACAGGGAATCCGTGCTCTCTGAG‑‑AACTTGAGTAAGGTTTTAGAATAAACATCGGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGATTTCTTATTATGTCTGCAATATCAtgtg > 2:4148658/1‑140 (MQ=255) atCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGgtg > 1:4564883/1‑140 (MQ=255) tCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCCTGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGgtgt < 2:482993/140‑1 (MQ=255) tCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGgtgt < 1:464363/140‑1 (MQ=255) cATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGGTGTc > 1:1098319/1‑140 (MQ=255) cATTATTAATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGGTGTc < 1:59623/140‑1 (MQ=255) ttattaATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGGTGTCaa > 2:2523555/1‑140 (MQ=255) ttattaATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGGTGTCaa > 1:2013933/1‑140 (MQ=255) taATGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGGTGTCAAGAAt > 1:614341/1‑140 (MQ=255) aaTGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTGAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGACGTTATGCTTTCTTATTATGTCCGCAATATCAGGTGTCAAGAATg > 2:4401200/1‑140 (MQ=255) aaTGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGGTGTCAAGAATg > 2:4717043/1‑140 (MQ=255) aTGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGGTGTCAAGAATgg > 1:2192936/1‑140 (MQ=255) tGACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGGTGTCAAGAATGga < 2:1449597/140‑1 (MQ=255) gACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCTCAATATCAGGTGTCAAGAATGgag > 2:2411357/1‑140 (MQ=255) gACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGGTGTCAAGAATGtag > 2:3484797/1‑140 (MQ=255) gACAGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGGTGTCAAGAATGgag < 1:2312488/140‑1 (MQ=255) aGGGAATCCGTTCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGGTGTCAAGAATGGAGAGt > 2:12712/1‑140 (MQ=255) aGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGGTGTCAAGAATGGAGAGt > 1:2808307/1‑140 (MQ=255) aGGGAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGGTGTCAAGAATGGAGAGt > 2:2486479/1‑140 (MQ=255) ggAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGGTGTCAAGAATGGAGAGTtc > 1:1478726/1‑140 (MQ=255) ggAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGGTGTCAAGAATGGAGAGTtc > 2:4121088/1‑140 (MQ=255) ggAATCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGGTGTCAAGAATGGAGAGCtc > 1:1691692/1‑140 (MQ=255) aTCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGGTGTCAAGAATGGAGAGTTCTCg < 1:3827271/140‑1 (MQ=255) tCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATTCTTTCTTATTATGTCCGCAATATCAGGTGTCAAGAATGGAGAGTTCTCGc > 2:4268679/1‑140 (MQ=255) tCCGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGGTGTCAAGAATGGAGAGTTCTCGc > 1:1745246/1‑140 (MQ=255) ccGTGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGGTGTCAAGAATGGAGAGTTCTCGct < 2:1417826/140‑1 (MQ=255) tGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTCGAATAAACATCAGCTGTCTCATCATGCTGATGCAAAGTGAGCATTTCAGTCGTTATGCTTTCTTATTATGTCCGCAATATCAGGTGTCAAGAATGGAGCGTTCTCGCtctc > 2:2709338/1‑140 (MQ=255) tGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGACTAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGGTGTCAAGAATGGAGAGTTCTCGCtctc > 1:1862699/1‑140 (MQ=255) tGCTCTCT‑‑TAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGGTGTCAAGAATGGAGAGTTCTCGCtctc > 2:1925569/1‑140 (MQ=255) || CAGGCTTTACGCTTGCGTTTAAAAGATGAAACCAGTGTGATTCTTTCTGATCTCTATCTGCAAATATTGCAGTACATTGAAATGCATAAGACTACACTAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCT‑‑T‑‑AACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGGTGTCAAGAATGGAGAGTTCTCGCTCTC > NZ_CP025268/1223956‑1224223 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |